cluster # 1356

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Oryza sativa
cluster # 1356 cluster # 1356 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1356#0 length = 761 sequences # 1

consensus_1356#1 length = 360 sequences # 1

consensusID : consensus_1356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 761
fasta sequence

                              [AAGAAACATCTCGTACCACCACCAAGCACCTTTGTGCTTCTGCACTGCAAAATCTTACAAAAAGAAGCTGCTCAATGCAACATCTTACATCCTGTGAAACTGTCAAATGTGTAAGCTAATGTTGTATCAAAATCGGATGCCACGGAGAACAAATGATGTGTCGGTATCATTCTTTCTTGGGGACAACATGTTCCGCCTGGAACTGTTCCTGTGGTTTGCTTCGCTCCTGAATCAGCATCTTCTGGAGACCTGATGGCTGAGGATGCCAAAATCTCCCACTACCAATCTTTTTTGGTGGCTTCGAGACTCCGAATAGAGTTGTCGCAATTAGAAGTTGGAACTAGAAAAATATGGACAGAATGAGTCCTCCAGCAGCATCTGCATTCTCATTGATCTGGTAAGCTCAGGCCAAGAGCTTCTGCAGCAGTTCTGATATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACCCTTTCCGCAACTTGTAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAATTTTCCTCTGGAGGGAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCCTCTGACCGTTTTCCTTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGAGCAGCAACTGATGCACAAACAAGTGTGGCAGCACGGAATTTATCCAATCCAATATTGCTAGCAAGACCAGCAAGAAAATTCCTTGGATTCTCCCCACTGAT]

[+] EMBL CB644318             [AAGAAACATCTCGTACCACCACCAAGCACCTTTGTGCTTCTGCACTGCAAAATCTTACAAAAAGAAGCTGCTCAATGCAACATCTTACATCCTGTGAAACTGTCAAATGTGTAAGCTAATGTTGTATCAAAATCGGATGCCACGGAGAACAAATGATGTGTCGGTATCATTCTTTCTTGGGGACAACATGTTCCGCCTGGAACTGTTCCTGTGGTTTGCTTCGCTCCTGAATCAGCATCTTCTGGAGACCTGATGGCTGAGGATGCCAAAATCTCCCACTACCAATCTTTTTTGGTGGCTTCGAGACTCCGAATAGAGTTGTCGCAATTAGAAGTTGGAACTAGAAAAATATGGACAGAATGAGTCCTCCAGCAGCATCTGCATTCTCATTGATCTGGTAAGCTCAGGCCAAGAGCTTCTGCAGCAGTTCTGATATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACCCTTTCCGCAACTTGTAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAATTTTCCTCTGGAGGGAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCCTCTGACCGTTTTCCTTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGAGCAGCAACTGATGCACAAACAAGTGTGGCAGCACGGAATTTATCCAATCCAATATTGCTAGCAAGACCAGCAAGAAAATTCCTTGGATTCTCCCCACTGAT]




>consensus_1356#0
AAGAAACATCTCGTACCACCACCAAGCACCTTTGTGCTTCTGCACTGCAAAATCTTACAA
AAAGAAGCTGCTCAATGCAACATCTTACATCCTGTGAAACTGTCAAATGTGTAAGCTAAT
GTTGTATCAAAATCGGATGCCACGGAGAACAAATGATGTGTCGGTATCATTCTTTCTTGG
GGACAACATGTTCCGCCTGGAACTGTTCCTGTGGTTTGCTTCGCTCCTGAATCAGCATCT
TCTGGAGACCTGATGGCTGAGGATGCCAAAATCTCCCACTACCAATCTTTTTTGGTGGCT
TCGAGACTCCGAATAGAGTTGTCGCAATTAGAAGTTGGAACTAGAAAAATATGGACAGAA
TGAGTCCTCCAGCAGCATCTGCATTCTCATTGATCTGGTAAGCTCAGGCCAAGAGCTTCT
GCAGCAGTTCTGATATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACC
CTTTCCGCAACTTGTAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAA
TTTTCCTCTGGAGGGAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCC
TCTGACCGTTTTCCTTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGA
GCAGCAACTGATGCACAAACAAGTGTGGCAGCACGGAATTTATCCAATCCAATATTGCTA
GCAAGACCAGCAAGAAAATTCCTTGGATTCTCCCCACTGAT

consensusID : consensus_1356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [AGATATATATGGATTGATGGCGGGAACTACAAAAATATGAACAGAATGACTCCTCCATCACCATCTGGATTCTCTTTGATCTAGGAAGCTCACGCCAAGAGCTTCTGCATCAGTTCTGATATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACCCTTTCCGCAACTTGTAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAATTTTCCTCTGGAGGGAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCCTCTGACCGTTTTCCTTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGAGCAACAACTGATGC]

[+] EMBL CB644316             [AGATATATATGGATTGATGGCGGGAACTACAAAAATATGAACAGAATGACTCCTCCATCACCATCTGGATTCTCTTTGATCTAGGAAGCTCACGCCAAGAGCTTCTGCATCAGTTCTGATATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACCCTTTCCGCAACTTGTAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAATTTTCCTCTGGAGGGAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCCTCTGACCGTTTTCCTTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGAGCAACAACTGATGC]




>consensus_1356#1
AGATATATATGGATTGATGGCGGGAACTACAAAAATATGAACAGAATGACTCCTCCATCA
CCATCTGGATTCTCTTTGATCTAGGAAGCTCACGCCAAGAGCTTCTGCATCAGTTCTGAT
ATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACCCTTTCCGCAACTTG
TAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAATTTTCCTCTGGAGG
GAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCCTCTGACCGTTTTCC
TTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGAGCAACAACTGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1356#0      AAGAAACATCTCGTACCACCACCAAGCACCTTTGTGCTTCTGCACTGCAAAATCTTACAA 60
consensus_1356#1      ------------------------------------------------------------
                                                                                  

consensus_1356#0      AAAGAAGCTGCTCAATGCAACATCTTACATCCTGTGAAACTGTCAAATGTGTAAGCTAAT 120
consensus_1356#1      ------------------------------------------------------------
                                                                                  

consensus_1356#0      GTTGTATCAAAATCGGATGCCACGGAGAACAAATGATGTGTCGGTATCATTCTTTCTTGG 180
consensus_1356#1      ------------------------------------------------------------
                                                                                  

consensus_1356#0      GGACAACATGTTCCGCCTGGAACTGTTCCTGTGGTTTGCTTCGCTCCTGAATCAGCATCT 240
consensus_1356#1      ------------------------------------------------------------
                                                                                  

consensus_1356#0      TCTGGAGACCTGATGGCTGAGGATGCCAAAATCTCCCACTACCAATCTTTTTTGGTGGCT 300
consensus_1356#1      ------------------------------------------------------------
                                                                                  

consensus_1356#0      TCGAGACTCCGAATAGAGTTGTCGCAATTAGAAGTTGGAACTAGAAAAATATGGACAGAA 360
consensus_1356#1      --------------AGATATATATGGATTGATGGCGGGAACTACAAAAATATGAACAGAA 46
                                    ***  * *    ***    *  ******* ********* ******

consensus_1356#0      TGAGTCCTCCAGCAGCATCTGCATTCTCATTGATCTGGTAAGCTCAGGCCAAGAGCTTCT 420
consensus_1356#1      TGACTCCTCCATCACCATCTGGATTCTCTTTGATCTAGGAAGCTCACGCCAAGAGCTTCT 106
                      *** ******* ** ****** ****** ******* * ******* *************

consensus_1356#0      GCAGCAGTTCTGATATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACC 480
consensus_1356#1      GCATCAGTTCTGATATTACCAGCAGTACAGATGCTCCTATATAGAGATAAGAGATGAACC 166
                      *** ********************************************************

consensus_1356#0      CTTTCCGCAACTTGTAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAA 540
consensus_1356#1      CTTTCCGCAACTTGTAAATTCTTCTTAAGTCCACCAGCAACCATTTCCATTTCCGCAGAA 226
                      ************************************************************

consensus_1356#0      TTTTCCTCTGGAGGGAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCC 600
consensus_1356#1      TTTTCCTCTGGAGGGAACATGTTATGAATTCTACAAATCTTTGAGAGCTCATCTAGAGCC 286
                      ************************************************************

consensus_1356#0      TCTGACCGTTTTCCTTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGA 660
consensus_1356#1      TCTGACCGTTTTCCTTGCATCTCTAGTGCCCAGCATTGCAAGAACAAAGAACGTGTGCGA 346
                      ************************************************************

consensus_1356#0      GCAGCAACTGATGCACAAACAAGTGTGGCAGCACGGAATTTATCCAATCCAATATTGCTA 720
consensus_1356#1      GCAACAACTGATGC---------------------------------------------- 360
                      *** **********                                              

consensus_1356#0      GCAAGACCAGCAAGAAAATTCCTTGGATTCTCCCCACTGAT 761
consensus_1356#1      -----------------------------------------