These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1540 fasta sequence [CTTACCGAAGAAACGCCACGATTTTTTCACCCCGTGCCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT-CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG--TTTTTTTTTTTGGGAGCACACGGC-CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA-A-TATTATAGCAGAAAAACAATGTTTATTACGACTTTAAAAGGAGAAAAAAAAAAA] [+] EMBL AK068717 [CTTACCGAAGAAACGCCACGATTTTTTCACCCCGTGCCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA A TATTATAGCAGAAAAACAATGTTT ] [+] EMBL CB654966 [ TTCACCCCTTGCCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTCCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCAGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAA ] [+] EMBL AK099970 [ CCACGCCACGGCCACGGCCACGGTCGGCCACTCGGTTGGCGCCTCCCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAGT TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAA ] [+] EMBL CB678391 [ GCGCCCCTCCGACGCACGACGACCCGCGGTTCCCTCCCGTCCCCGGCCGCCTCCTGCCTCCACGCGCGGCTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAG ] [+] EMBL CB657481 [ CTCCACCTCCACCTCCCCTCCCCTCCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATC ] [+] EMBL CB647328 [ CCTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGCTCAAGTTCGCAGAAGTGTTGATTGGGTCTACAGTCAGTTCAATAAGATGCAGACAACATCTTGGAGGAATGCAAGTAACAGCTCTAACCGTGGAAGTTTCAGTGAGGATGCTAGGAGAAGATATTACCAACGTATGCAACAGGAATATGAGGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGTCCCCAC GGACGACTGGTACTGGCAGACAGATA ] [+] EMBL CK085052 [ CTCGCCGCGCCGCGCCGCCCAGCAATCCAACTCCGAATCATCCTCCTCACCCCGCGCGGCGCCGCTCCGACCGACCAACCAACCAACCGCAGCGGACGCCACGCGAGGGGAATCGAAGCGGAGACGTAGGGGCGGGGGGAATTCGGCCGAGGGGAAGCATGAGCTTGGCCTCCCACGCGCCTAGCCGTCGAGCTCGAATCGCGTGAGATAAGGGGCCGCGAGCACCGTGGTGGGAGAGGGAGATGGCCTCGCGGGAGGACGACCGCGCCGGCCGCGGTGGCGGCGGAGGGCGGACGGAGCAGGAGCGGCGGCCGTCCAAGGCGTGGGGGATCCTCATCTTCGGCCTCATCGGCGCCACCACCGCCACCTTCGCGGTTGC ] [-] EMBL CB657482 [ GGAGGAACAAGAGAGAGTTCAAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAG ] [-] EMBL CB654967 [ AAAGAATAAGACACATGCAAAGTGTTTTCAACAGAGAGAGGAACAAGTTTAGGAGAAGTTATGAAGCTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGACTGGTACTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAAATAAG GGGAAAATAATAAGTAGCCCATA A TATTATAGCATTAAAAgga ] [-] EMBL CB678392 [ CAAGTTTAGGAGAAGTTATGAAGTTTGGAGGGAGAATGGCCCTCCAGGTGGATATAATTATGT CCCACGGGACGATTGGTATTGGCAGACAGATACATCTCACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACATAGGGTGTATTGTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGTTTTTAGATCAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCTTTGGGAAGATTGAAAGGATCAATCAAGACAGTATCAGCAGGCCTTTCAATCAAGTGGATGATGTGTTAGGTTCGTCTGTATTTGTTGATAGCCTGTAAGCACAAGTTTTTATTTTCGAG TTTTTTTTTGGGAGCACACGCCTCCTGATGTAGA ] [-] EMBL CB647329 [ TATAATTATGT CCCCCGGGACGACTGGTATTGGCAGACAGATACATCACACTCGGAACATAAAAATAGGCGGACATATACTCCTGCAGGACCTAGGGTGTATTCTATGTCACATCACTATACAGTCCTTGGTCTCAATAGGTCACGGACAACACCATACACCGACGCAGAAGTCAAGAATGCTTTTAGAACAAAAGCAATGGAGGTTCACCCTGATCAAAATCAAGATAATAGAGAGGCTGCAGAAGAGAGGTTTAAGGAGGTTGTCAAATCATACGAAGCAATAAAACTGGAGAGAAAAAATGATGCAAGTTGAATGTGAATATGTAGCTTCACTGGAGCTCATTGGGAAGATTGAAAGGATCAATGAAGACAGTATCAGCAGGCCTTGCAATCAAGTGGATGATCTGTTAGGTTCGGCTGTATCTGTTGATAGCCTGTAAGCACAAGTTTTTATTTGCGAG TTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATAGAGTATTATAGCAGAAAAACAATGTTTATTACGACTTTAAAAGGAGAAA ] [+] EMBL AU162392 [ TGATNGCCTGTAAGCACAAGTTTTTNTTTGCGAGTTTTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA A TATTATAGCAGAAAAACAATGTTTATTACGACTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSR10131B [ TGATAGCCTGTAAGCACAAGTTTTTATTTGCGAGTTTTTTTTTTTTTGGGAGCACACGGC CCTGATGTAGACTAGGATATTGTCGACAAAGGTGCAAAAGGAAATTGCTCATTTGTGCTTAGCCACTAATTTGGGGTGCAAAATCTGGACTGCGGGTGAGCATTTTTGTTGTGTACACCTGCTGGTTTATTTTTTATTAGTAGAAAGTAGAGTGAAGATCTGATAGAAAATAATAAGTAGCCCATA A TATTATAGCA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||