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Oryza sativa
cluster # 13569 cluster # 13569       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13569#0 length = 991 sequences # 2  
consensus_13569#1 length = 596 sequences # 8  
consensus_13569#2 length = 429 sequences # 1  
consensus_13569#3 length = 175 sequences # 2  

consensusID : consensus_13569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 991
fasta sequence
                              [CGCCGCCGTCGTTCACGAGACCCATTTCGCCACCCACCCGTGCTCTCCCTCCTCTCCTCGTGCTCGTGGTGGGTAGGGGGACTAGGATACTGCTAGGGTTTTGCGAGCCATGGCGTGGACCGCCGCCGCAGCCACCGTCACCAGGGCCGCCGCAACGCCGGCCGCGGAGCTCCGCCTGCCGCTCGCCGCCGGCCTCGGCCGCGCCTCCTTCGCCGTCACCGGCCGTCTCCGCCGCGCTGTCTCCGCGTCCCTCTCCACCGCCGCGGCCGCCGTTAAAAAGGAGGCTGTTCAGACAGAGAAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAGAAGTCCCATCTGTTGTCCAAGAGTTCCCTTTAATCTCCATCATGAATTGATCATCCCAATGGCTCACAGTGCTATGTTGCAGAGGTCTCCTGCTGCAATATCTGCAAGAATTGGTCTTGCCAAGCGTCATGAGTCTAATAAATCATTAAAAGGTTTATCAACATGATGTATCTCCA]

[+] EMBL AK061373             [CGCCGCCGTCGTTCACGAGACCCATTTCGCCACCCACCCGTGCTCTCCCTCCTCTCCTCGTGCTCGTGGTGGGTAGGGGGACTAGGATACTGCTAGGGTTTTGCGAGCCATGGCGTGGACCGCCGCCGCAGCCACCGTCACCAGGGCCGCCGCAACGCCGGCCGCGGAGCTCCGCCTGCCGCTCGCCGCCGGCCTCGGCCGCGCCTCCTTCGCCGTCACCGGCCGTCTCCGCCGCGCTGTCTCCGCGTCCCTCTCCACCGCCGCGGCCGCCGTTAAAAAGGAGGCTGTTCAGACAGAGAAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAGAAGTCCCATCTGTTGTCCAAGAGTTCCCTTTAATCTCCATCATGAATTGATCATCCCAATGGCTCACAGTGCTATGTTGCAGAGGTCTCCTGCTGCAATATCTGCAAGAATTGGTCTTGCCAAGCGTCATGAGTCTAATAAATCATTAAAAGGTTTATCAACATGATGTATCTCCA]
[+] EMBL AA753205             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 naggAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAATTGGTCACTATCCTGGAANAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAGAA TCCCATCTGTTGTCC                                                                                                                                                              ]


>consensus_13569#0 CGCCGCCGTCGTTCACGAGACCCATTTCGCCACCCACCCGTGCTCTCCCTCCTCTCCTCG TGCTCGTGGTGGGTAGGGGGACTAGGATACTGCTAGGGTTTTGCGAGCCATGGCGTGGAC CGCCGCCGCAGCCACCGTCACCAGGGCCGCCGCAACGCCGGCCGCGGAGCTCCGCCTGCC GCTCGCCGCCGGCCTCGGCCGCGCCTCCTTCGCCGTCACCGGCCGTCTCCGCCGCGCTGT CTCCGCGTCCCTCTCCACCGCCGCGGCCGCCGTTAAAAAGGAGGCTGTTCAGACAGAGAA GGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGT CTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGA GCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTA CTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAA TGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGC AGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGC TACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTA TCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAA CTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAGAAGTCCCATCTGTTGTCCAAGAGTT CCCTTTAATCTCCATCATGAATTGATCATCCCAATGGCTCACAGTGCTATGTTGCAGAGG TCTCCTGCTGCAATATCTGCAAGAATTGGTCTTGCCAAGCGTCATGAGTCTAATAAATCA TTAAAAGGTTTATCAACATGATGTATCTCCA



consensusID : consensus_13569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 596
fasta sequence
                              [TTAACCCTCCTAAGGGAATAGC-TGCGG-CG-CGTTAAAAGGAGGCTGTTCAGACAGAGAAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTG-AACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAAAAAAAAAAAAACAGAGCGGCCGC]

[+] EMBL BI306148             [TTAACCCTCCTAAAGGAATAGCTTGCGGCCGCCGTTAAAAAGAGGCTGTTCAGACAGAGAAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTG AACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAAAAAAAAAAAAACAGAGCGGCCGC]
[+] EMBL BU673150             [     CCTCCTAAGGGAATAGC TTCGG  T CGTTAAAAGGAGGCTGTTCAGACAGA AAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCACGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAAACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAAAAAAAAAAAAACA          ]
[+] EMBL CB967410             [            AGGGAATAGC TGCGG CG CGTTAAAAGGAGGC G TCAGACAGAGAAGG CCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAA NCAACAATATGGTC TTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTNGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATGGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTG AACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAAAAAAAAAAAAACA          ]
[+] EMBL CB965280             [                                         GAGGCTGTTCAGACAGAGAAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTC TTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTNGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTG AACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAAAAAAAAAAAAACA          ]
[+] EMBL BI796471             [                                                                                              CATCAAAGCCAACAATATGGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGC AACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCC ATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACC ATTAAGATCTTG AACTGCCTGCAATAAACGTTGATGCCCAGGAAAAAA                        ]
[-] EMBL BU673676             [                                                                                                                GGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTG AACTGCCTGCAATAAACGTTG                                       ]
[-] EMBL CB964726             [                                                                                                                GGTCTTTGTCTGTGGAGGTGGTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCCATTAAGATCTTG AACTGCCTGCAATAAACGTT                                        ]
[+] EMBL CF309792             [                                                                                                                                                                                                                                              CTACTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAGCTCTGCCGCCGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTG AACTGCCTGCAATAAACG                                          ]


>consensus_13569#1 TTAACCCTCCTAAGGGAATAGCTGCGGCGCGTTAAAAGGAGGCTGTTCAGACAGAGAAGG CCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCT CTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGAGC AAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTACT CTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAATG AGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGCAG CTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGCTA CTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTATC CTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAACT GCCTGCAATAAACGTTGATGCCCAGGAAAAAAAAAAAAAAAAAACAGAGCGGCCGC



consensusID : consensus_13569#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence
                              [ATGGATTGAAGGAGTAAAAAGGTGCTAGCTATTTTTCAGTTGTCAAGACAACAATCATGTTGGTTGTTTTACAAGATTTCAAGAAAGTGAATGAGATTTATGCCAAATATTTTCCAGTTCTTGCACCAGCAGGTTCAATTTACCAAGTAGCAGTTTTGCCGCCGAACGCCAAAATCGAGATCGAGGGCATTGCTGCTTTTTAGTTACCGGGTACTGTTTATCAATCAAATTGCCAATAAGCATTTTGGGGGGCCGTTTTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTTTGAACCTGTTTTTGTAGTACCAATTAAGATTTTGAACTGCCTGCAATAAACGTTAATGCCCAGGAAAAAAAAAGTCCCATTTGTTGTCCAAGGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF309793             [ATGGATTGAAGGAGTAAAAAGGTGCTAGCTATTTTTCAGTTGTCAAGACAACAATCATGTTGGTTGTTTTACAAGATTTCAAGAAAGTGAATGAGATTTATGCCAAATATTTTCCAGTTCTTGCACCAGCAGGTTCAATTTACCAAGTAGCAGTTTTGCCGCCGAACGCCAAAATCGAGATCGAGGGCATTGCTGCTTTTTAGTTACCGGGTACTGTTTATCAATCAAATTGCCAATAAGCATTTTGGGGGGCCGTTTTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTTTGAACCTGTTTTTGTAGTACCAATTAAGATTTTGAACTGCCTGCAATAAACGTTAATGCCCAGGAAAAAAAAAGTCCCATTTGTTGTCCAAGGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13569#2 ATGGATTGAAGGAGTAAAAAGGTGCTAGCTATTTTTCAGTTGTCAAGACAACAATCATGT TGGTTGTTTTACAAGATTTCAAGAAAGTGAATGAGATTTATGCCAAATATTTTCCAGTTC TTGCACCAGCAGGTTCAATTTACCAAGTAGCAGTTTTGCCGCCGAACGCCAAAATCGAGA TCGAGGGCATTGCTGCTTTTTAGTTACCGGGTACTGTTTATCAATCAAATTGCCAATAAG CATTTTGGGGGGCCGTTTTAGTTGGTCACTATCCTGGAAGAATGCACTGCCATTTTGAAC CTGTTTTTGTAGTACCAATTAAGATTTTGAACTGCCTGCAATAAACGTTAATGCCCAGGA AAAAAAAAGTCCCATTTGTTGTCCAAGGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAA



consensusID : consensus_13569#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 175
fasta sequence
                              [AGAGGACGAGACAAGGGGCAATCAAATTGCCAATAAGCATTTTGTGGGGCCGTTCTAGTTGGTCCCTATCCTGGAAGAATGCCCTGCCCTTTTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAACTGCCTGCAATAAACGTTGATGCCCCGGAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761412             [AGAGGACGAGACAAGGGGCAATCAAATTGCCAATAAGCATTTTGTGGGGCCGTTCTAGTTGGTCCCTATCCTGGAAGAATGCCCTGCCCTTTTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAACTGCCTGCAATAAACGTTGATGCCCCGGAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761453             [AGAGGACGAGACAAGGGGCAATCAAATTGCCAATAAGCATTTTGTGGGGCCGTTCTAGTTGGTCCCTATCCTGGAAGAATGCCCTGCCCTTTTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAACTGCCTGCAATAAACGTTGATGCCCCGGAAAAAAAAAAAAAAAAAAA]


>consensus_13569#3 AGAGGACGAGACAAGGGGCAATCAAATTGCCAATAAGCATTTTGTGGGGCCGTTCTAGTT GGTCCCTATCCTGGAAGAATGCCCTGCCCTTTTGAACCTGATCTTGTAGTACCAATTAAG ATCTTGAACTGCCTGCAATAAACGTTGATGCCCCGGAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13569#0      CGCCGCCGTCGTTCACGAGACCCATTTCGCCACCCACCCGTGCTCTCCCTCCTCTCCTCG 60
consensus_13569#1      ------------------------------------------------------------
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      TGCTCGTGGTGGGTAGGGGGACTAGGATACTGCTAGGGTTTTGCGAGCCATGGCGTGGAC 120
consensus_13569#1      ------------------------------------------------------------
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      CGCCGCCGCAGCCACCGTCACCAGGGCCGCCGCAACGCCGGCCGCGGAGCTCCGCCTGCC 180
consensus_13569#1      ------------------------------------------------------------
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      GCTCGCCGCCGGCCTCGGCCGCGCCTCCTTCGCCGTCACCGGCCGTCTCCGCCGCGCTGT 240
consensus_13569#1      -----------------------------------------------------------T 1
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      CTCCGCGTCCCTCTCCACCGCCGCGGCCGCCGTTAAAAAGGAGGCTGTTCAGACAGAGAA 300
consensus_13569#1      TAACCCTCCTAAGGGAATAGCTGCGGCG--CGTTAAAA-GGAGGCTGTTCAGACAGAGAA 58
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      GGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGT 360
consensus_13569#1      GGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGT 118
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      CTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGA 420
consensus_13569#1      CTCTGGAGTTCTTGGCCTAAACCCTGAGACTGGAAAGTTTGTATCTGAAAGCGTGGAGGA 178
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      GCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTA 480
consensus_13569#1      GCAAACTGAACAGGTTATGAAGAATATGGGTGAAATATTGAAAGCAAGTGGTGCTAGCTA 238
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      -----------------------------ATGGATTGAAGGAGTAAAAAGGTGCTAGCTA 31
                                                                                   

consensus_13569#0      CTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAA 540
consensus_13569#1      CTCTTCAGTTGTCAAGACAACAATCATGTTGGCTGATCTACAAGATTTCAAGAAAGTGAA 298
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      TTTTTCAGTTGTCAAGACAACAATCATGTTGGTTGTTTTACAAGATTTCAAGAAAGTGAA 91
                                                                                   

consensus_13569#0      TGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGC 600
consensus_13569#1      TGAGATCTATGCCAAATATTTTCCAGCTCCTGCACCAGCACGCTCAACTTACCAAGTAGC 358
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      TGAGATTTATGCCAAATATTTTCCAGTTCTTGCACCAGCAGGTTCAATTTACCAAGTAGC 151
                                                                                   

consensus_13569#0      AGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGC 660
consensus_13569#1      AGCTCTGCCGCTGAACGCCAGAATCGAGATCGAGTGCATTGCTGCTCTCTAGTTACCTGC 418
consensus_13569#3      -------------------------------------------------AGAGGACGAGA 11
consensus_13569#2      AGTTTTGCCGCCGAACGCCAAAATCGAGATCGAGGGCATTGCTGCTTTTTAGTTACCGGG 211
                                                                             **  * 

consensus_13569#0      TACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTA 720
consensus_13569#1      TACTGTCTATCAATCAAATTGCCAATAAGCATTCTGTGGTGCCGTTCTAGTTGGTCACTA 478
consensus_13569#3      CAAGG---GGCAATCAAATTGCCAATAAGCATTTTGTGGGGCCGTTCTAGTTGGTCCCTA 68
consensus_13569#2      TACTGTTTATCAATCAAATTGCCAATAAGCATTTTGGGGGGCCGTTTTAGTTGGTCACTA 271
                        *  *     *********************** ** ** ****** ********* ***

consensus_13569#0      TCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAA 780
consensus_13569#1      TCCTGGAAGAATGCACTGCCATTCTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAA 538
consensus_13569#3      TCCTGGAAGAATGCCCTGCCCTTTTGAACCTGATCTTGTAGTACCAATTAAGATCTTGAA 128
consensus_13569#2      TCCTGGAAGAATGCACTGCCATTTTGAACCTGTTTTTGTAGTACCAATTAAGATTTTGAA 331
                       ************** ***** ** ******** * ******************* *****

consensus_13569#0      CTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAGAAGTCCCATCTGTTGTCCAAGAGTT 840
consensus_13569#1      CTGCCTGCAATAAACGTTGATGCCCAGGAAAAAAAAAAAAAAA-----AAACAGAGCGGC 593
consensus_13569#3      CTGCCTGCAATAAACGTTGATGCCCCGGAAAAAAAAAAAAAAAAAAA------------- 175
consensus_13569#2      CTGCCTGCAATAAACGTTAATGCCCAGGAAAAAAAAAGTCCCATTTGTTGTCCAAGGGTT 391
                       ****************** ****** ******** **     *                 

consensus_13569#0      CCCTTTAATCTCCATCATGAATTGATCATCCCAATGGCTCACAGTGCTATGTTGCAGAGG 900
consensus_13569#1      CGC--------------------------------------------------------- 596
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 429
                                                                                   

consensus_13569#0      TCTCCTGCTGCAATATCTGCAAGAATTGGTCTTGCCAAGCGTCATGAGTCTAATAAATCA 960
consensus_13569#1      ------------------------------------------------------------
consensus_13569#3      ------------------------------------------------------------
consensus_13569#2      ------------------------------------------------------------
                                                                                   

consensus_13569#0      TTAAAAGGTTTATCAACATGATGTATCTCCA 991
consensus_13569#1      -------------------------------
consensus_13569#3      -------------------------------
consensus_13569#2      -------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)