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Oryza sativa
cluster # 13572 cluster # 13572       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13572#0 length = 1141 sequences # 10  
consensus_13572#1 length = 724 sequences # 2  
consensus_13572#2 length = 300 sequences # 1  

consensusID : consensus_13572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1141
fasta sequence
                              [CCGTCGCAGGGACTGTCCCGCCGCAGCAGGGCCGGCCCCGGGGAGCGGCAGCAGCCGGGGGAGGCGGCCAGCCTCGCCGTGGCCCTCGCGCGGGAGCGGATCAGGCGCAGCGGCGAGGCGGAGGGGGAGGAGGAGGGGCCCGTGCCGTTCTGGCAGAGGACTTGGTTCCTCGCGCTGCTGCTGGCGATGGCCGCCGCGTCGTTCGCGATCGCGCTGCTGCTCTACCTCGGCCTCGACCTCCCCGAGGCGTCGCCGGCGCAGTCCTACGCCGCCGACCCGGACAACGTCGTCGAGATTACCTACGGATCGGCGATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACA-CATGGGACAGTT-GTAAGGCTCC--AACATATGAGGACTCGAAAGTGGCT-ACAC-AGCCACATGCATGCTTCTCCCA-TTACGGGAAATTTAGAGG-TTAGTTGCTTTGGCGGTG-A-AAATGAATCAGA-CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCA-G-TGGGAAGTCTTGGCGGCAAAACC-AGAAAATCCGGTTGC-GCCATG-TTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA-CCCGCA-TTGCTGGTGGACAGCAAGAGGTAT-GTGGTGTTGGCGACA-AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA-GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGT-AACCA-TTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTG-TACAAAGAAGGATTATCTCTCTGGTTCGCTCTTATTGTTTTCGGAATTCTGATTGGATGAATAGTGTATAAAACACCCTGGGACATGTCTAAAAGTTTGGCCTAAAAAAA]

[+] EMBL AK100085             [CCGTCGCAGGGACTGTCCCGCCGCAGCAGGGCCGGCCCCGGGGAGCGGCAGCAGCCGGGGGAGGCGGCCAGCCTCGCCGTGGCCCTCGCGCGGGAGCGGATCAGGCGCAGCGGCGAGGCGGAGGGGGAGGAGGAGGGGCCCGTGCCGTTCTGGCAGAGGACTTGGTTCCTCGCGCTGCTGCTGGCGATGGCCGCCGCGTCGTTCGCGATCGCGCTGCTGCTCTACCTCGGCCTCGACCTCCCCGAGGCGTCGCCGGCGCAGTCCTACGCCGCCGACCCGGACAACGTCGTCGAGATTACCTACGGATCGGCGATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACA CATGGGACAGTT GTAAGGCTCC  AACATATGAGGACTCGAAAGTGGCT ACAC AGCCACATGCATGCTTCTCCCA TTACGGGAAATTTAGAGG TTAGTTGCTTTGGCGGTG A AAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCA G TGGGAAGTCTTGGCGGCAAAACC AGAAAATCCGGTTGC GCCATG TTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA CCCGCA TTGCTGGTGGACAGCAAGAGGTAT GTGGTGTTGGCGACA AACGTCCTGGCAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGT AACCA TTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTG TACAAAGAAGGATTAT                                                                                              ]
[+] EMBL CB657072             [CCGTCGCAGGGACTGTCCCGCCGCAGCAGGGCCGGCCCCGGGGAGCGGCAGCAGCCGGGGGAGGCGGCCAGCCTCGCCGTGGCCCTCGCGCGGGAGCGGATCAGGCGCAGCGGCGAGGCGGAGGGGGAGGAGGAGGGGCCCGTGCCGTTCTGGCAGAGGACTTGGTTCCTCGCGCTGCTGCTGGCGATGGCCGCCGCGTCGTTCGCGATCGCGCTGCTGCTCTACCTCGGCCTCGACCTCCCCGAGGCGTCGCCGGCGCAGTCCTACGCCGCCGACCCGGACAACGTCGTCGAGATTACCTACGGATCGGCGATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACA CATGGGACAGTT GTAAGGCTCC  AACATATGAGGACTCGAAAGTGGCT ACAC AGCCACATGCATGCTTCTCCCA TTACGGGAAATTTAGAGG TTAGTTGCTTTGGCGGTG A AAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCA G TGGGAAGTCTTGGCGGCAAAACC AGAAAATCCGGTTGC GCCATG TTGATACTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C73075               [                                                                                                                                                                                                                                                  CGAGGCGTCGCCGNCGCAGTCCTACGCCGCCGACCCGGACAACGTCGTCGAGATTACCTACGGATCGGCGATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACA CATGGGACAGTT GTAAGGCTCC  AACATATGAGGACTCGAAAGTGGCT ACAC AGCCACATGCATGCTTCTNCCA TTACGGGNATTTTAGAGG T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB666028             [                                                                                                                                                                                                                                                                                       GACAACCCCGTCGAGATTACCTACGGATCGGCGATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACA CATGGGACAGTT GTAAGGCTCC  AACATATGAGGACTCGAAAGTGGCT ACAC AGCCACATGCATGCTTCTCCCA TTACGGGAAATTTAGAGG TTAGTTGCTTTGGCGGTG A AAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCA G TGGGAAGTCTTGGCGGCAAAACC AGAAAATCCGGTTGC GCCATG TTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA CCCGCA TTGCTGGTGGACAGCAAGAGGTAT GTGGTGTTGGCGACA AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGT AACCA TTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTG TACAAAGAAGGga                                                                                                 ]
[-] EMBL CB666029             [                                                                                                                                                                                                                                                                                                                       GATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACA CATGGGACAGTT GTAAGGCTCC  AACATATGAGGACTCGAAAGTGGCT ACAC AGCCACATGCATGCTTCTCCCA TTACGGGAAATTTAGAGG TTAGTTGCTTTGGCGGTG A AAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCA G TGGGAAGTCTTGGCGGCAAAACC AGAAAATCCGGTTGC GCCATG TTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA CCCGCA TTGCTGGTGGACAGCAAGAGGTAT GTGGTGTTGGCGACA AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGT AACCA TTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCAGTTATTCCCGGTCTCCCGGTG TACAAAGAAGGATTAaaaagga                                                                                        ]
[-] EMBL CB657073             [                                                                                                                                                                                                                                                                                                                                 ATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACA CATGGGACAGTT GTAAGGCTCC  AACATATGAGGACTCGAAAGTGGCT ACAC AGCCACATGCATGCTTCTCCCA TTACGGGAAATTTAGAGG TTAGTTGCTTTGGCGGTG A AAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCA G TGGGAAGTCTTGGCGGCAAAACC AGAAAATCCGGTTGC GCCATG TTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA CCCGCA TTGCTGGTGGACAGCAAGAGGTAT GTGGTGTTGGCGACA AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGT AACCA TTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGCGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTG TACAAAGAAGGATTATCTCTCTGGCTCGCTCTTATTGTTTTCGGAATTCTGATTGGATGAATAGTGTATAAAACACCCTGG                             ]
[+] EMBL BI797406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATAACACCATGGGACAGTTGGTAAGGCTCCCAAACATATGAGGACTCGAAAGTGGCTAACACAAGCCACATGCATGCTTCTCCCAGTTACGGGAAATTTAGAGG TTAGTTGCTTTGGCGGTG A AAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCA G TGGGAAGTCTTGGC GCAAAACCAAGAAAATCCGGTTGC GCCATG TTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA CCCGCA TTGCTGGTGGACAGCAAGAGGTAT GTGGTGTTGGCGACA AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGC AAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAAC TTGT AACCA TTAGAATACCA TTCA TTCATTTTGA CTATTAGA CAACTTTT TT T TAAGAAT GTTTA CTGAAGATT CCAC TATTCCC GTCTCCC GTG TA                                                                                                            ]
[+] EMBL BI809938             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGGACTCGAAAGTGGCT ACAC A CCACATGCATGCTTCTCCCA TTACGGGAAATTTAGAGGCTTACTTGCTTT GCGGTG ACAAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGAGGGCACGCTGGGAAGTCTTGGCGGC AAACC AGAAAATCCGGTTGCGGCCATGCTTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACACCCCGCACTTGCTGGTGGACAGCAAGAGGTATCGTGGTGTTGGCGACACAACGTCCTGAC ATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCCGTATTGCAGGGCAGCAGGGATGAGACGGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAACAGTATTAAAACGTTGTCAACCACTTAGAATACC GTTCAGTTCATTTTGAGCTATTAGAGC ACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTGCTAC AAGAAGGATTATCTCTCTGGTTCGCTCTaaaaa                                                                         ]
[+] EMBL AU085930             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTTGNCGGTGAA AAATGAATCAGACCACTGGAGACTACTGGAGGCTCGAAATTGAGGGCA N TGGGAAGTCTTGGCGGCAAAACC AGAAAATCCGGTTGC GCCATG TTGATACTGGTGGTTA CTGCATAGCCATGATAGGAAGTACA CCCGCA TTGCTGGTGGACAGCAAGAGGTAT GTGGTGTTGGCGACA AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGT AACCA TTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTG TACAAAGAAGGATTATCTCTCaaaaa                                                                                    ]
[+] EMBL BM420929             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            A AAATGAATCAGA CACTGGAGACTACTGGAGGCTCGAGATTGA GGCA G TGGGAAGTCTTGGCGGCTAAACC AGAAAATCCGGTTGC GCCATG TTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA CCCGCA TTGCTGGTGGACAGCAAGAGGTAT GTGGTGTTGGCGACA AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGA GGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGT AACCA TTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGC ACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTG TACAAAGAAGGATTATCTCTCTGGTTCGCTCTTATTGTTTTCGGAATTCTGATTGGTTTAATAGTGTATAAAACAACCTGGGACATGTCTAAAAGTTTGGCCTAAAAAAA]


>consensus_13572#0 CCGTCGCAGGGACTGTCCCGCCGCAGCAGGGCCGGCCCCGGGGAGCGGCAGCAGCCGGGG GAGGCGGCCAGCCTCGCCGTGGCCCTCGCGCGGGAGCGGATCAGGCGCAGCGGCGAGGCG GAGGGGGAGGAGGAGGGGCCCGTGCCGTTCTGGCAGAGGACTTGGTTCCTCGCGCTGCTG CTGGCGATGGCCGCCGCGTCGTTCGCGATCGCGCTGCTGCTCTACCTCGGCCTCGACCTC CCCGAGGCGTCGCCGGCGCAGTCCTACGCCGCCGACCCGGACAACGTCGTCGAGATTACC TACGGATCGGCGATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGAT GTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGAC TCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCC ATAACACATGGGACAGTTGTAAGGCTCCAACATATGAGGACTCGAAAGTGGCTACACAGC CACATGCATGCTTCTCCCATTACGGGAAATTTAGAGGTTAGTTGCTTTGGCGGTGAAAAT GAATCAGACACTGGAGACTACTGGAGGCTCGAGATTGAGGGCAGTGGGAAGTCTTGGCGG CAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTATCTGCATAGCCATGAT AGGAAGTACACCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACAAACGT CCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAG CTGTATTGCAGGGCAGCAGGGATGAGAGGTGACATGATGAACCCATTAGTATGGTGCTTG TACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGTTCAGTTCATTTTGAG CTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCG GTCTCCCGGTGTACAAAGAAGGATTATCTCTCTGGTTCGCTCTTATTGTTTTCGGAATTC TGATTGGATGAATAGTGTATAAAACACCCTGGGACATGTCTAAAAGTTTGGCCTAAAAAA A



consensusID : consensus_13572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 724
fasta sequence
                              [ACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTAATCCCATAACACATGGGACAGTTGTAAGGCTCCAACATATGAGGACTCGAAAGTGGCTACACAGCCACATGCATGCTTCTCCCATTACGGGAAATTTAGAGGTTAGTTGCTTTGGCGGTGAAAATGAATCAGACACTGGAGACTACTGGAGGCTCGAGATTGAGGGCAGTGGGAAGTCTTGGCGGCAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACACCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACAAACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGAGGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTC---------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATAAAAAAA]

[-] EMBL CA762576             [ACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTAATCCCATAACACATGGGACAGTTGTAAGGCTCCAACATATGAGGACTCGAAAGTGGCTACACAGCCACATGCATGCTTCTCCCATTACGGGAAATTTAGAGGTTAGTTGCTTTGGCGGTGAAAATGAATCAGACACTGGAGACTACTGGAGGCTCGAGATTGAGGGCAGTGGGAAGTCTTGGCGGCAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACACCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACAAACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGAGGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTC         AAAAAAAAAAAAA                                           ]
[+] EMBL CF337965             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGAGAGGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGTTCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTCCCGGTGTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATAAAAAAA]


>consensus_13572#1 ACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGG ACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTA ATCCCATAACACATGGGACAGTTGTAAGGCTCCAACATATGAGGACTCGAAAGTGGCTAC ACAGCCACATGCATGCTTCTCCCATTACGGGAAATTTAGAGGTTAGTTGCTTTGGCGGTG AAAATGAATCAGACACTGGAGACTACTGGAGGCTCGAGATTGAGGGCAGTGGGAAGTCTT GGCGGCAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTATCTGCATAGCC ATGATAGGAAGTACACCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACA AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAA AATAGCTGTATTGCAGGGCAGCAGGGATGAGAGGTGACATGATGAACCCATTAGTATGGT GCTTGTACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGTTCAGTTCATT TTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTAT TCCCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATAAA AAAA



consensusID : consensus_13572#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence
                              [TCGAGGCGAACCTTCTAGAAGTTTCCNGGCGGGCNCGATGCCCTCCAACGAGGCCGCCGCGGTNGGCCNCCCGGACGCAGCCGTCGAGGGGACTGTCCCNCCGCAGCAGGNCCGGCCCCGGGGAGCTGCANAGCCGGGTGAGGCGGCCAGCTCGNCGTGGCCCTCGCGCGGGANGATTCAGGCGCAGGCGAGGCNGAGGGGGAGGAGGANGGGNCCGTGCCGTTCTGGAGAGGACTTGGTTCCTCGCGCTGCTGCTGGCGATGGCGNCGCGTCGTTCGGATCGGCTGCTGCTCTACCTCG]

[+] EMBL OSC299               [TCGAGGCGAACCTTCTAGAAGTTTCCNGGCGGGCNCGATGCCCTCCAACGAGGCCGCCGCGGTNGGCCNCCCGGACGCAGCCGTCGAGGGGACTGTCCCNCCGCAGCAGGNCCGGCCCCGGGGAGCTGCANAGCCGGGTGAGGCGGCCAGCTCGNCGTGGCCCTCGCGCGGGANGATTCAGGCGCAGGCGAGGCNGAGGGGGAGGAGGANGGGNCCGTGCCGTTCTGGAGAGGACTTGGTTCCTCGCGCTGCTGCTGGCGATGGCGNCGCGTCGTTCGGATCGGCTGCTGCTCTACCTCG]


>consensus_13572#2 TCGAGGCGAACCTTCTAGAAGTTTCCNGGCGGGCNCGATGCCCTCCAACGAGGCCGCCGC GGTNGGCCNCCCGGACGCAGCCGTCGAGGGGACTGTCCCNCCGCAGCAGGNCCGGCCCCG GGGAGCTGCANAGCCGGGTGAGGCGGCCAGCTCGNCGTGGCCCTCGCGCGGGANGATTCA GGCGCAGGCGAGGCNGAGGGGGAGGAGGANGGGNCCGTGCCGTTCTGGAGAGGACTTGGT TCCTCGCGCTGCTGCTGGCGATGGCGNCGCGTCGTTCGGATCGGCTGCTGCTCTACCTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13572#0      CCGTCGCAGGGACTGTCCCGCCGCAGCAGGGCCGGCCCCGGGGAGCGGCAGCAGCCGGGG 60
consensus_13572#1      ------------------------------------------------------------
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      GAGGCGGCCAGCCTCGCCGTGGCCCTCGCGCGGGAGCGGATCAGGCGCAGCGGCGAGGCG 120
consensus_13572#1      ------------------------------------------------------------
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      GAGGGGGAGGAGGAGGGGCCCGTGCCGTTCTGGCAGAGGACTTGGTTCCTCGCGCTGCTG 180
consensus_13572#1      ------------------------------------------------------------
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      CTGGCGATGGCCGCCGCGTCGTTCGCGATCGCGCTGCTGCTCTACCTCGGCCTCGACCTC 240
consensus_13572#1      ------------------------------------------------------------
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      CCCGAGGCGTCGCCGGCGCAGTCCTACGCCGCCGACCCGGACAACGTCGTCGAGATTACC 300
consensus_13572#1      ------------------------------------------------------------
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      TACGGATCGGCGATCAAATTGATGCATGAGAGGACCAAATTTCGGTTGCATTCCCACGAT 360
consensus_13572#1      -------------------------------------------------------ACGAT 5
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      GTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGAC 420
consensus_13572#1      GTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACGTGGACGAC 65
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      TCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCC 480
consensus_13572#1      TCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTAATCCC 125
consensus_13572#2      ------------TCGA-GGCGAACCTTCTAGAAGTT--TCCNGGCGGGCNCGATGCCCTC 45
                                   * **  * **  *  * *  ** *  * * *     *  * *   * *

consensus_13572#0      ATAACACATGGGACAGTTGTAAGGCTCCAACATATGAGGACTCGAAAGTGGCTACACAGC 540
consensus_13572#1      ATAACACATGGGACAGTTGTAAGGCTCCAACATATGAGGACTCGAAAGTGGCTACACAGC 185
consensus_13572#2      -CAACG-AGGCCGCCGCGGTNGGCCNCC--CGGACGCAGCCGTCGAGGGGACTGTCCCNC 101
                         ***  * *   * *  **  * * **  *  * *  * *    * * * **   *  *

consensus_13572#0      CACATGCATGCTTCTCCCATTACGGGAAATTTAGAGGTTAGTTGCTTTGGC--GGTGAAA 598
consensus_13572#1      CACATGCATGCTTCTCCCATTACGGGAAATTTAGAGGTTAGTTGCTTTGGC--GGTGAAA 243
consensus_13572#2      CGCA-GCAGGNCCGGCCC----CGGGGAGCTGCANAGCCGGGTGAGGCGGCCAGCTCGNC 156
                       * ** *** *     ***    **** *  *     *   * **    ***  * *    

consensus_13572#0      ATGAATCAGACACTGGAGACTACTGGAG-GCTCGAGATTGAGGGC-AGTGGGAAGTCTTG 656
consensus_13572#1      ATGAATCAGACACTGGAGACTACTGGAG-GCTCGAGATTGAGGGC-AGTGGGAAGTCTTG 301
consensus_13572#2      GTGGCCCTCGCGCGGGANGATTCAGGCGCAGGCGAGGCNGAGGGGGAGGAGGANGGGNCC 216
                        **   *   * * ***   * * ** *    ****   *****  **  *** *     

consensus_13572#0      GCGGCAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTAT-CTGCATAGCC 715
consensus_13572#1      GCGGCAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTAT-CTGCATAGCC 360
consensus_13572#2      GTGCCGTTCTGGAGAGGACTTGGTTCCTCGCGCTGCTGCTGGCGATGGCGNCGCGTCGTT 276
                       * * *         *   *  * * *  *  * ** * **** * *      ** * *  

consensus_13572#0      ATGATAGGAAGTACACCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACA 775
consensus_13572#1      ATGATAGGAAGTACACCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACA 420
consensus_13572#2      CGGATCGGCTGCTGCTCTACCTCG------------------------------------ 300
                         *** **  *     *  * * *                                    

consensus_13572#0      AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAA 835
consensus_13572#1      AACGTCCTGACAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAA 480
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      AATAGCTGTATTGCAGGGCAGCAGGGATGAGAGGTGACATGATGAACCCATTAGTATGGT 895
consensus_13572#1      AATAGCTGTATTGCAGGGCAGCAGGGATGAGAGGTGACATGATGAACCCATTAGTATGGT 540
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      GCTTGTACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGTTCAGTTCATT 955
consensus_13572#1      GCTTGTACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGTTCAGTTCATT 600
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      TTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTAT 1015
consensus_13572#1      TTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTAT 660
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      TCCCGGTCTCCCGGTGTACAAAGAAGGATTATCTCTCTGGTTCGCTCTTATTGTTTTCGG 1075
consensus_13572#1      TCCCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATAAA 720
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      AATTCTGATTGGATGAATAGTGTATAAAACACCCTGGGACATGTCTAAAAGTTTGGCCTA 1135
consensus_13572#1      AAAA-------------------------------------------------------- 724
consensus_13572#2      ------------------------------------------------------------
                                                                                   

consensus_13572#0      AAAAAA 1141
consensus_13572#1      ------
consensus_13572#2      ------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)