Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13573 cluster # 13573       Sequences # 13       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13573#0 length = 2548 sequences # 12  
 consensus_13573#1 length = 298 sequences # 1  
consensusID : consensus_13573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 2548
fasta sequence 
                              [TCCCCCACCTGTTTCCCCCCACGCCACCGCGATGGACACGCCGCCTCCACCTCCTCCGCCGCCGCCGCCGACGCCGACGCAGTCGTCGCCGCCGGTGAACTGGGACGCGCTCGACGCCCTCGTGCTCGACTTCGCCAGATCCGACCGCCTCCTCCTCCCGCCGGCCTCCCCGTCGCCGCCCTCCTCCCCGTCCTCGTCCTCCACCACCACCGCCACCTCCTCCTCCTCCTCGGCGCCCTCGCCGTCCTCCTCCTACCGCTCGCGCCTCCTCATCCGCCGCGCCCGCACCGCGCTCGAGGAGGGGGACGTCGACGCCGCGCTCGCGCTCCTCCGGGCCCACGCCCCCGCCGCGCTCCTCGACCACCGCCTCCTCTTCCACCTCCACAAGCAGAGATTCGTGGAGCTTGTGAGGAGGGGCACGGAGGCGGACAGGGAGGCGGCGCTGGACTGCCTCCGCACGGCACTGGCGCCCTGTGCGCTGGATGCCTACCCGGAAGCTTATGAGGAGTTCAAGCATATACTGCTAGTATTGATATATGACAAAG-ATGATCAATCATCCCCTGTAGCAAATGAGTGGTCTATAAAGAAGCGATTTGAGCTTGCTGGATTGCTATCATCCATATTGAGAACTCATTTACAAGCTTATGATCCTATTCTATCAATGACATTACGGTACTTGATAAGCATCCACAAACTACTTTGCTCGCGCCAAGGAATTTCTTCGCCTATATCTAATCTGACTGAAAGGCTGCTGTTTGATGACCGTGATCCACCTGCAGTTCCTCAGGAATGCTCGCTAGAAGCGCCACCATTTGATGAGGTAGATGTGCAAGCCCTAGCACATGCTGTGGAGTTGACAAGACAAGGGGCTGTTGACAGTTTGAAGTTTGCGAAAGGAGATTTATTTCAAGCGTTTCAGAATGAATTGTGCCGAATGAAGCTGGATCTGCCACTTCTGGATAAACTTATACACGAGTACTGTATATACAGGGGAATAGTTGAAGGTGGTTCCCATGTCCTTCCTGGATTGCAAAGCAATAACCAAAGTAATGATGTCAATTTCGTAGATAAACAGGAAGACAGTACTGAAACACGGATTGATTTTGAAATGACTAACAATCAGAATGGAAATTGTAGCACCAGTGATACTTCCCATCATGATTCCTGGTCCAGGAGATTACGTAGGGTTAGAAGTAGTGCATCGGGGCAACGAAGGCGGAAGAGATGGAGAGGACGGGTAGATGATCTGGATTATGGTTGTGAGACCCCATTGGATGCAAATAAACATGCTATTTTATGTTCTGCTCTTGACATGGATGAAGATGATATGATAGTTAAACCAGACTTGATGGCAGATACTGGTTTGCCTGATTCTAGATGTAATCAAGATCAGAAATATGAAGTTATTTTAGAGATGAGGGATCTCACACGCAAAGGAATGGCTTCAAAAGTTGTTGAAGAGATAAACAACATGGATCCTGATTTCTTCTTGAAAAACCCTATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTAGTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGCTTTACTGAAACCTTTGAAGGAAACTTTAGTAACACTAATTCAACCCTGTGAAGATGTACTCACAAAGTCAGTTTCATTACCCGTTCTTGCAAGTTCTCTCCAGATTGCAATGAGCAGGAGGCTTGGTATTGAAGAACCTCAGTTAATGAAGATAATTAGAACAACACTTCACACGCACAGCGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATTCTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCA-AGGGCTGACGCGATCCAACTGCTTATGCAATATGGTGGGAATGCCGAGGAAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAACAAAGATGAAAAAATAATCCGGTTCACACTTCTCATCCAAGGCATGAAAGGATTGCGTCGCAGCAGTAAATCATGATCGTTGCAATGAGGATCACCAAAGCTTTGCCTTCATGTTTTGTGCATCAGCAATTAGGCTATGAGAATACCTCATGTATATTGCCTGTGTTGCATACTTGCATCTTGTAAAATCTGTAACAATATGATTATTAGCACTATGGCAGTAATATGATG-TTTACTGGAACTGGATTTTCCTGTTAAAAAAAAAAAA]

[+] EMBL AK069060             [TCCCCCACCTGTTTCCCCCCACGCCACCGCGATGGACACGCCGCCTCCACCTCCTCCGCCGCCGCCGCCGACGCCGACGCAGTCGTCGCCGCCGGTGAACTGGGACGCGCTCGACGCCCTCGTGCTCGACTTCGCCAGATCCGACCGCCTCCTCCTCCCGCCGGCCTCCCCGTCGCCGCCCTCCTCCCCGTCCTCGTCCTCCACCACCACCGCCACCTCCTCCTCCTCCTCGGCGCCCTCGCCGTCCTCCTCCTACCGCTCGCGCCTCCTCATCCGCCGCGCCCGCACCGCGCTCGAGGAGGGGGACGTCGACGCCGCGCTCGCGCTCCTCCGGGCCCACGCCCCCGCCGCGCTCCTCGACCACCGCCTCCTCTTCCACCTCCACAAGCAGAGATTCGTGGAGCTTGTGAGGAGGGGCACGGAGGCGGACAGGGAGGCGGCGCTGGACTGCCTCCGCACGGCACTGGCGCCCTGTGCGCTGGATGCCTACCCGGAAGCTTATGAGGAGTTCAAGCATATACTGCTAGTATTGATATATGACAAAG ATGATCAATCATCCCCTGTAGCAAATGAGTGGTCTATAAAGAAGCGATTTGAGCTTGCTGGATTGCTATCATCCATATTGAGAACTCATTTACAAGCTTATGATCCTATTCTATCAATGACATTACGGTACTTGATAAGCATCCACAAACTACTTTGCTCGCGCCAAGGAATTTCTTCGCCTATATCTAATCTGACTGAAAGGCTGCTGTTTGATGACCGTGATCCACCTGCAGTTCCTCAGGAATGCTCGCTAGAAGCGCCACCATTTGATGAGGTAGATGTGCAAGCCCTAGCACATGCTGTGGAGTTGACAAGACAAGGGGCTGTTGACAGTTTGAAGTTTGCGAAAGGAGATTTATTTCAAGCGTTTCAGAATGAATTGTGCCGAATGAAGCTGGATCTGCCACTTCTGGATAAACTTATACACGAGTACTGTATATACAGGGGAATAGTTGAAGGTGGTTCCCATGTCCTTCCTGGATTGCAAAGCAATAACCAAAGTAATGATGTCAATTTCGTAGATAAACAGGAAGACAGTACTGAAACACGGATTGATTTTGAAATGACTAACAATCAGAATGGAAATTGTAGCACCAGTGATACTTCCCATCATGATTCCTGGTCCAGGAGATTACGTAGGGTTAGAAGTAGTGCATCGGGGCAACGAAGGCGGAAGAGATGGAGAGGACGGGTAGATGATCTGGATTATGGTTGTGAGACCCCATTGGATGCAAATAAACATGCTATTTTATGTTCTGCTCTTGACATGGATGAAGATGATATGATAGTTAAACCAGACTTGATGGCAGATACTGGTTTGCCTGATTCTAGATGTAATCAAGATCAGAAATATGAAGTTATTTTAGAGATGAGGGATCTCACACGCAAAGGAATGGCTTCAAAAGTTGTTGAAGAGATAAACAACATGGATCCTGATTTCTTCTTGAAAAACCCTATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTAGTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGCTTTACTGAAACCTTTGAAGGAAACTTTAGTAACACTAATTCAACCCTGTGAAGATGTACTCACAAAGTCAGTTTCATTACCCGTTCTTGCAAGTTCTCTCCAGATTGCAATGAGCAGGAGGCTTGGTATTGAAGAACCTCAGTTAATGAAGATAATTAGAACAACACTTCACACGCACAGCGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATTCTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCA AGGGCTGACGCGATCCAACTGCTTATGCAATATGGTGGGAATGCCGAGGAAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAACAAAGATGAAAAAATAATCCGGTT                                                                                                                                                                                                                                                     ]
[+] EMBL AK104976             [                             CGATGGACACGCCGCCTCCACCTCCTCCGCCGCCGCCGCCGACGCCGACGCAGTCGTCGCCGCCGGTGAACTGGGACGCGCTCGACGCCCTCGTGCTCGACTTCGCCAGATCCGACCGCCTCCTCCTCCCGCCGGCCTCCCCGTCGCCGCCCTCCTCCCCGTCCTCGTCCTCCACCACCACCGCCACCTCCTCCTCCTCCTCGGCGCCCTCGCCGTCCTCCTCCTACCGCTCGCGCCTCCTCATCCGCCGCGCCCGCACCGCGCTCGAGGAGGGGGACGTCGACGCCGCGCTCGCGCTCCTCCGGGCCCACGCCCCCGCCGCGCTCCTCGACCACCGCCTCCTCTTCCACCTCCACAAGCAGAGATTCGTGGAGCTTGTGAGGAGGGGCACGGAGGCGGACAGGGAGGCGGCGCTGGACTGCCTCCGCACGGCACTGGCGCCCTGTGCGCTGGATGCCTACCCGGAAGCTTATGAGGAGTTCAAGCATATACTGCTAGTATTGATATATGACAAAG ATGATCAATCATCCCCTGTAGCAAATGAGTGGTCTATAAAGAAGCGATTTGAGCTTGCTGGATTGCTATCATCCATATTGAGAACTCATTTACAAGCTTATGATCCTATTCTATCAATGACATTACGGTACTTGATAAGCATCCACAAACTACTTTGCTCGCGCCAAGGAATTTCTTCGCCTATATCTAATCTGACTGAAAGGCTGCTGTTTGATGACCGTGATCCACCTGCAGTTCCTCAGGAATGCTCGCTAGAAGCGCCACCATTTGATGAGGTAGATGTGCAAGCCCTAGCACATGCTGTGGAGTTGACAAGACAAGGGGCTGTTGACAGTTTGAAGTTTGCGAAAGGAGATTTATTTCAAGCGTTTCAGAATGAATTGTGCCGAATGAAGCTGGATCTGCCACTTCTGGATAAACTTATACACGAGTACTGTATATACAGGGGAATAGTTGAAGGTGGTTCCCATGTCCTTCCTGGATTGCAAAGCAATAACCAAAGTAATGATGTCAATTTCGTAGATAAACAGGAAGACAGTACTGAAACACGGATTGATTTTGAAATGACTAACAATCAGAATGGAAATTGTAGCACCAGTGATACTTCCCATCATGATTCCTGGTCCAGGAGATTACGTAGGGTTAGAAGTAGTGCATCGGGGCAACGAAGGCGGAAGAGATGGAGAGGACGGGTAGATGATCTGGATTATGGTTGTGAGACCCCATTGGATGCAAATAAACATGCTATTTTATGTTCTGCTCTTGACATGGATGAAGATGATATGATAGTTAAACCAGACTTGATGGCAGATACTGGTTTGCCTGATTCTAGATGTAATCAAGATCAGAAATATGAAGTTATTTTAGAGATGAGGGATCTCACACGCAAAGGAATGGCTTCAAAAGTTGTTGAAGAGATAAACAACATGGATCCTGATTTCTTCTTGAAAAACCCTATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTAGTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGCTTTACTGAAACCTTTGAAGGAAACTTTAGTAACACTAATTCAACCCTGTGAAGATGTACTCACAAAGTCAGTTTCATTACCCGTTCTTGCAAGTTCTCTCCAGATTGCAATGAGCAGGAGGCTTGGTATTGAAGAACCTCAGTTAATGAAGATAATTAGAACAACACTTCACACGCACAGCGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATTCTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCA AGGGCTGACGCGATCCAACTGCTTATGCAATATGGTGGGAATGCCGAGGAAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAACAAAGATGAAAAAATAATCCGGT                                                                                                                                                                                                                                                      ]
[+] EMBL CA753834             [                             CGATGGACACGCCGCCTCCACCTCCTCCGCCGCCGCCGCCGACGCCGACGCAGTCGTCGCCGCCGGTGAACTGGGACGCGCTCGACGCCCTCGTGCTCGACTTCGCCAGATCCGACCGCCTCCTCCTCCCGCCGGCCTCCCCGTCGCCGCCCTCCTCCCCGTCCTCGTCCTCCACCACCACCGCCACCTCCTCCTCCTCCTCGGCGCCCTCGCCGTCCTCCTCCTACCGCTCGCGCCTCCTCATCCGCCGCGCCCGCACCGCGCTCGAGGAGGGGGACGTCGACGCCGCGCTCGCGCTCCTCCGGGCCCACGCCCCCGCCGCGCTCCTCGACCACCGCCTCCTCTTCCACCTCCACAAGCAGAGATTCGTGGAGCTTGTGAGGAGGGGCACGGAGGCGGACAGGGAGGCGGCGCTGGACTGCCTCCGCACGGCACTGGCGCCCTGTGCGCTGGATGCCTACCCGGAAGCTTATGAGGAGTTCAAGCATATACTGCTAGTATTGATATATGACAAAGAATGATC ATCATCCCCTGTAGCANATGAGTGGTCTATNAAGAAGCGATTTGAGCTTGCTGGATTGCTATCATCCATATTGAGAACTCATTTACNAGCTTATGATCCTATNCTATCAATGACATTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB639753             [                                                                                                                                                                                                    TCCTCCACCACCACCGCCACCTCCTCCTCCTCCTCGGCGCCCTCGCCGTCCTCCTCCTACCGCTCGCGCCTCCTCATCCGCCGCGCCCGCACCGCGCTCGAGGAGGGGGACGTCGACGCCGCGCTCGCGCTCCTCCGGGCCCACGCCCCCGCCGCGCTCCTCGACCACCGCCTCCTCTTCCACCTCCACAAGCAGAGATTCGTGGAGCTTGTGAGGAGGGGCACGGAGGCGGACAGGGAGGCGGCGCTGGACTGCCTCCGCACGGCACTGGCGCCCTGTGCGCTGGATGCCTACCCGGAAGCTTATGAGGAGTTCAAGCATATACTGCTAGTATTGATATATGACAAAG ATGATCAATCATCCCCTGTAGCAAATGAGTGGTCTATAAAGAAGCGATTTGAGCTTGCTGGATTGCTATCATCCATATTGAGAACTCATTTACAAGCTTATGATCCTATTCTATCAATGACATTACGGTACTTGATAAGCATCCACAAACTACTTTGCTCGCGCCAAGGAATNTCTTCGCCTATATCTAATCTGACTGAAAGGCTGCTGTTTGATGACCGTGATCCACCTGCAGTTCCTCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF309755             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAAACTTATACACGAGTACTGTATATACAGGGGAATAGTTGAAGGTGGTTCCCATGTCCTTCCTGGATTGCAAAGCAATAACCAAAGTAATGATGTCAATTTCGTAGATAAACAGGAAGACAGTACTGAAACACGGATTGATTTTGAAATGACTAACAATCAGAATGGAAATTGTAGCACCAGTGATACTTCCCATCATGATTCCTGGTCCAGGAGATTACGTAGGGTTAGAAGTAGTGCATCGGGGCAACGAAGGCGGAAGAGATGGAGAGGACGGGTAGATGATCTGGATTATGGTTGTGAGACCCCATTGGATGCAAATAAACATGCTATTTTATGTTCTGCTCTTGACATGGATGAAGATGATATGATAGTTAAACCAGACTTGATGGCAGATACTGGTTTGCCTGATTCTAGATGTAATCAAGATCAGAAATATGAAGTTATTTTAGAGATGAAGGATCTCACACGCAAAGGAATGGCTTCAAAAGTTGTTGAAGAGATAAACAACATGGATCCTGATTTCTTCTTGAAAAACCCTATTCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF309152             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCTGATTTCTTCTTGAAAAACCCTATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTAGTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGCTTTACTGAAACCTTTGAAGGAAACTTTAGTAACACTAATTCAACCCTGTGAAGATGTACTCACAAAGTCAGTTTCATTACCCGTTCTTGCAAGTTCTCTCCAGACTGCAATGAGCAGGAGGCTTGGTATTGAAGAACCTCAGTTAATGAAGATAATTAGAACAACACTTCACACGCACAGCGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATTCTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGGTAGTAGCCCTCAGGAGTANTCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CF309153             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGATAATTAGAACAACACTTCACACGCACAGCGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATTCTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCA AGGGCTGACGCGATCCAACTGCTTATGCAATATGGTGGGAATGCCGAGGAAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAACAAAGATGAAAAAATAATCCGGTTCACACTTCTCATCCAAaaa                                                                                                                                                                                                                                  ]
[-] EMBL CF309756             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATTCTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCA AGGGCTGACGCGATCCAACTGCTTATGCAATATGGTGGGAATGCCGAGGAAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAACAAAGATGAAAAA                                                                                                                                                                                                                                                                ]
[-] EMBL CA759322             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                atTTCTCTAAAAGAGGTTGATCCATCTGCCGGGAGTCCCAATATGTCCAAGGTTCTTACAGATGAATGTGCTAATGGATCTTCTCGAATCACAACATGCTCTAGTGGCAAGGTGCTAGATAAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCA AGGGCTGACGCGATCCAACTGCTTATGCAATATGGTGGGAATGCCGAGGCAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAACAAAGATGAAAAAATAATCCGGTTCACACTTCTCATCCAAGGCATGAAAGGATTGCGTCGCAGCAGTAAATCATGATCGTTGCAATGAGGATCACCAAAGCTTTGCCTTCATGTTTTGTGCATCAGCAATTAGGCTATGAGAATACCTCATGTATATTGCCTGTGTTGCATACTTGCATCTTGTAAAATCTGTAACAATATGATTATTAGCACTATGGCAGTAATATGATG TTTACTGGAACTGGATTTTCCTGTTAAAAAAAAAAAA]
[+] EMBL BI805286             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCATGGAATTTCTTGCTTTGCCACAGGGCTGACGCGATCCAACTGCTTATGC ATATGGTGGGAATGCCGAGGAAGTCATCC ACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTTTCATTTGTTTTAGAAATC ATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAAC AAGATGAAAAAATAATCCGGTTCACACTTCTCATCCAAGGCATGAAAGGATTGCGTCGCAGCAGTAAATCATGATCGTTGCAATGAGGATCACC AAGCTTTGCCTTTATGTTTTGTGCATCAGCAATTAGGCTATGAGAATA   CATGTGTATTGCCTGTGTTGCATACTTGCATCTTGTAAAATCTGTAAC ATATGATTATTAGCACTATGGCAGTAATATGATGTTTTACTGGAAaaa                        ]
[-] EMBL CF335802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAAAAA                                                                                                                                                                                                                                                                          ]
[+] EMBL CF335803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAAaa                                                                                                                                                                                                                                                                           ]




>consensus_13573#0
TCCCCCACCTGTTTCCCCCCACGCCACCGCGATGGACACGCCGCCTCCACCTCCTCCGCC
GCCGCCGCCGACGCCGACGCAGTCGTCGCCGCCGGTGAACTGGGACGCGCTCGACGCCCT
CGTGCTCGACTTCGCCAGATCCGACCGCCTCCTCCTCCCGCCGGCCTCCCCGTCGCCGCC
CTCCTCCCCGTCCTCGTCCTCCACCACCACCGCCACCTCCTCCTCCTCCTCGGCGCCCTC
GCCGTCCTCCTCCTACCGCTCGCGCCTCCTCATCCGCCGCGCCCGCACCGCGCTCGAGGA
GGGGGACGTCGACGCCGCGCTCGCGCTCCTCCGGGCCCACGCCCCCGCCGCGCTCCTCGA
CCACCGCCTCCTCTTCCACCTCCACAAGCAGAGATTCGTGGAGCTTGTGAGGAGGGGCAC
GGAGGCGGACAGGGAGGCGGCGCTGGACTGCCTCCGCACGGCACTGGCGCCCTGTGCGCT
GGATGCCTACCCGGAAGCTTATGAGGAGTTCAAGCATATACTGCTAGTATTGATATATGA
CAAAGATGATCAATCATCCCCTGTAGCAAATGAGTGGTCTATAAAGAAGCGATTTGAGCT
TGCTGGATTGCTATCATCCATATTGAGAACTCATTTACAAGCTTATGATCCTATTCTATC
AATGACATTACGGTACTTGATAAGCATCCACAAACTACTTTGCTCGCGCCAAGGAATTTC
TTCGCCTATATCTAATCTGACTGAAAGGCTGCTGTTTGATGACCGTGATCCACCTGCAGT
TCCTCAGGAATGCTCGCTAGAAGCGCCACCATTTGATGAGGTAGATGTGCAAGCCCTAGC
ACATGCTGTGGAGTTGACAAGACAAGGGGCTGTTGACAGTTTGAAGTTTGCGAAAGGAGA
TTTATTTCAAGCGTTTCAGAATGAATTGTGCCGAATGAAGCTGGATCTGCCACTTCTGGA
TAAACTTATACACGAGTACTGTATATACAGGGGAATAGTTGAAGGTGGTTCCCATGTCCT
TCCTGGATTGCAAAGCAATAACCAAAGTAATGATGTCAATTTCGTAGATAAACAGGAAGA
CAGTACTGAAACACGGATTGATTTTGAAATGACTAACAATCAGAATGGAAATTGTAGCAC
CAGTGATACTTCCCATCATGATTCCTGGTCCAGGAGATTACGTAGGGTTAGAAGTAGTGC
ATCGGGGCAACGAAGGCGGAAGAGATGGAGAGGACGGGTAGATGATCTGGATTATGGTTG
TGAGACCCCATTGGATGCAAATAAACATGCTATTTTATGTTCTGCTCTTGACATGGATGA
AGATGATATGATAGTTAAACCAGACTTGATGGCAGATACTGGTTTGCCTGATTCTAGATG
TAATCAAGATCAGAAATATGAAGTTATTTTAGAGATGAGGGATCTCACACGCAAAGGAAT
GGCTTCAAAAGTTGTTGAAGAGATAAACAACATGGATCCTGATTTCTTCTTGAAAAACCC
TATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTAGTAGCTTCTGGTGATCA
CGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGC
TTTACTGAAACCTTTGAAGGAAACTTTAGTAACACTAATTCAACCCTGTGAAGATGTACT
CACAAAGTCAGTTTCATTACCCGTTCTTGCAAGTTCTCTCCAGATTGCAATGAGCAGGAG
GCTTGGTATTGAAGAACCTCAGTTAATGAAGATAATTAGAACAACACTTCACACGCACAG
CGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGATTGATTC
TCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTACAGATGA
ATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGATGAAGG
TAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAAGGTCAT
GGAATTTCTTGCTTTGCCAAGGGCTGACGCGATCCAACTGCTTATGCAATATGGTGGGAA
TGCCGAGGAAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGATACGTT
TCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTCTATTGG
AACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATACAGAAA
CAAAGATGAAAAAATAATCCGGTTCACACTTCTCATCCAAGGCATGAAAGGATTGCGTCG
CAGCAGTAAATCATGATCGTTGCAATGAGGATCACCAAAGCTTTGCCTTCATGTTTTGTG
CATCAGCAATTAGGCTATGAGAATACCTCATGTATATTGCCTGTGTTGCATACTTGCATC
TTGTAAAATCTGTAACAATATGATTATTAGCACTATGGCAGTAATATGATGTTTACTGGA
ACTGGATTTTCCTGTTAAAAAAAAAAAA

consensusID : consensus_13573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence 
                              [TGATTTCTTCTTGAAAAACCCTATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTACTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGCTTTACTGAAACCTTTGAAGAAACTTTACTAACACTAATTCAACCCTGTGAAGATGTACTCACAAATCATTTTCATTACCCGTCCTTGCAATTTTCTCCCAAAATTCCAATAACCAAGGAGGGTTTTTTTTTTTAAAAAAACCCCCCCTTTTATAAAA]

[+] EMBL AA754086             [TGATTTCTTCTTGAAAAACCCTATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTACTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGCTTTACTGAAACCTTTGAAGAAACTTTACTAACACTAATTCAACCCTGTGAAGATGTACTCACAAATCATTTTCATTACCCGTCCTTGCAATTTTCTCCCAAAATTCCAATAACCAAGGAGGGTTTTTTTTTTTAAAAAAACCCCCCCTTTTATAAAA]




>consensus_13573#1
TGATTTCTTCTTGAAAAACCCTATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAA
GCTACTAGCTTCTGGTGATCACGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCC
TCTTGCTGCCAGTAACCAAGCTTTACTGAAACCTTTGAAGAAACTTTACTAACACTAATT
CAACCCTGTGAAGATGTACTCACAAATCATTTTCATTACCCGTCCTTGCAATTTTCTCCC
AAAATTCCAATAACCAAGGAGGGTTTTTTTTTTTAAAAAAACCCCCCCTTTTATAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13573#0      TCCCCCACCTGTTTCCCCCCACGCCACCGCGATGGACACGCCGCCTCCACCTCCTCCGCC 60
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GCCGCCGCCGACGCCGACGCAGTCGTCGCCGCCGGTGAACTGGGACGCGCTCGACGCCCT 120
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      CGTGCTCGACTTCGCCAGATCCGACCGCCTCCTCCTCCCGCCGGCCTCCCCGTCGCCGCC 180
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      CTCCTCCCCGTCCTCGTCCTCCACCACCACCGCCACCTCCTCCTCCTCCTCGGCGCCCTC 240
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GCCGTCCTCCTCCTACCGCTCGCGCCTCCTCATCCGCCGCGCCCGCACCGCGCTCGAGGA 300
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GGGGGACGTCGACGCCGCGCTCGCGCTCCTCCGGGCCCACGCCCCCGCCGCGCTCCTCGA 360
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      CCACCGCCTCCTCTTCCACCTCCACAAGCAGAGATTCGTGGAGCTTGTGAGGAGGGGCAC 420
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GGAGGCGGACAGGGAGGCGGCGCTGGACTGCCTCCGCACGGCACTGGCGCCCTGTGCGCT 480
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GGATGCCTACCCGGAAGCTTATGAGGAGTTCAAGCATATACTGCTAGTATTGATATATGA 540
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      CAAAGATGATCAATCATCCCCTGTAGCAAATGAGTGGTCTATAAAGAAGCGATTTGAGCT 600
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TGCTGGATTGCTATCATCCATATTGAGAACTCATTTACAAGCTTATGATCCTATTCTATC 660
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      AATGACATTACGGTACTTGATAAGCATCCACAAACTACTTTGCTCGCGCCAAGGAATTTC 720
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TTCGCCTATATCTAATCTGACTGAAAGGCTGCTGTTTGATGACCGTGATCCACCTGCAGT 780
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TCCTCAGGAATGCTCGCTAGAAGCGCCACCATTTGATGAGGTAGATGTGCAAGCCCTAGC 840
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      ACATGCTGTGGAGTTGACAAGACAAGGGGCTGTTGACAGTTTGAAGTTTGCGAAAGGAGA 900
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TTTATTTCAAGCGTTTCAGAATGAATTGTGCCGAATGAAGCTGGATCTGCCACTTCTGGA 960
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TAAACTTATACACGAGTACTGTATATACAGGGGAATAGTTGAAGGTGGTTCCCATGTCCT 1020
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TCCTGGATTGCAAAGCAATAACCAAAGTAATGATGTCAATTTCGTAGATAAACAGGAAGA 1080
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      CAGTACTGAAACACGGATTGATTTTGAAATGACTAACAATCAGAATGGAAATTGTAGCAC 1140
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      CAGTGATACTTCCCATCATGATTCCTGGTCCAGGAGATTACGTAGGGTTAGAAGTAGTGC 1200
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      ATCGGGGCAACGAAGGCGGAAGAGATGGAGAGGACGGGTAGATGATCTGGATTATGGTTG 1260
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TGAGACCCCATTGGATGCAAATAAACATGCTATTTTATGTTCTGCTCTTGACATGGATGA 1320
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      AGATGATATGATAGTTAAACCAGACTTGATGGCAGATACTGGTTTGCCTGATTCTAGATG 1380
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TAATCAAGATCAGAAATATGAAGTTATTTTAGAGATGAGGGATCTCACACGCAAAGGAAT 1440
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GGCTTCAAAAGTTGTTGAAGAGATAAACAACATGGATCCTGATTTCTTCTTGAAAAACCC 1500
consensus_13573#1      ---------------------------------------TGATTTCTTCTTGAAAAACCC 21
                                                              *********************

consensus_13573#0      TATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTAGTAGCTTCTGGTGATCA 1560
consensus_13573#1      TATTCTTCTATTTCAGCTGAAACAGGTTGAATTTCTTAAGCTACTAGCTTCTGGTGATCA 81
                       ******************************************* ****************

consensus_13573#0      CGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGC 1620
consensus_13573#1      CGGAGCTGCTCTCAAGGTTGCATCCACTCATCTGGGGCCTCTTGCTGCCAGTAACCAAGC 141
                       ************************************************************

consensus_13573#0      TTTACTGAAACCTTTGAAGGAAACTTTAGTAACACTAATTCAACCCTGTGAAGATGTACT 1680
consensus_13573#1      TTTACTGAAACCTTTGAAG-AAACTTTACTAACACTAATTCAACCCTGTGAAGATGTACT 200
                       ******************* ******** *******************************

consensus_13573#0      CACAAAGTCAGTTTCATTACCCGTTCTTGCAAGTT-CTCTCCAGATTGCAATGAGCA-GG 1738
consensus_13573#1      CACAAA-TCATTTTCATTACCCGTCCTTGCAATTTTCTCCCAAAATTCCAATAACCAAGG 259
                       ****** *** ************* ******* ** *** * * *** **** * ** **

consensus_13573#0      AGGCTTGGTATT----GAAGAACCTCAGTTAATGAAGATAATTAGAACAACACTTCACAC 1794
consensus_13573#1      AGGGTTTTTTTTTTTAAAAAAACCCCCCCTTTTATAAAA--------------------- 298
                       *** **  * **     ** **** *   *  *  * *                      

consensus_13573#0      GCACAGCGAATGGTTTAAGCTTCAGATGTGCAAGGACCGTTTTGAGCACTTTTTGAAGAT 1854
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TGATTCTCTAAAAGAGGTTGATCCATCTGCGGGGAGTCACAATATGTCCAAGGTTCTTAC 1914
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      AGATGAATGTGCTAATGGATCTTCTCAAATCACAACATGCTCTAGTGGCAAGGTGCTAGA 1974
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TGAAGGTAGTAGCCCTCAGGAGTCATCAGAAGTTACCTGTGATGAAAACGCCATACTCAA 2034
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GGTCATGGAATTTCTTGCTTTGCCAAGGGCTGACGCGATCCAACTGCTTATGCAATATGG 2094
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TGGGAATGCCGAGGAAGTCATCCAACAGATCTTTTCGTAGTGCTTTGTGTAAATATCAGA 2154
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TACGTTTCATTTGTTTTAGAAATCAATTATTTGTTCATACTTTTCTTGTATATGAAGTTC 2214
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TATTGGAACTAGGTTTCTGGTCCCAGTACCTTTGTCCACTACGTTTTCTTCCATGTAATA 2274
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      CAGAAACAAAGATGAAAAAATAATCCGGTTCACACTTCTCATCCAAGGCATGAAAGGATT 2334
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      GCGTCGCAGCAGTAAATCATGATCGTTGCAATGAGGATCACCAAAGCTTTGCCTTCATGT 2394
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TTTGTGCATCAGCAATTAGGCTATGAGAATACCTCATGTATATTGCCTGTGTTGCATACT 2454
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      TGCATCTTGTAAAATCTGTAACAATATGATTATTAGCACTATGGCAGTAATATGATGTTT 2514
consensus_13573#1      ------------------------------------------------------------
                                                                                   

consensus_13573#0      ACTGGAACTGGATTTTCCTGTTAAAAAAAAAAAA 2548
consensus_13573#1      ----------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)