These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 791 fasta sequence [TACGCCACGCCGCAGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATGTAA] [+] EMBL CF335436 [TACGCCACGCCGCAGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTA ] [+] EMBL AK067481 [ AGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATGTA ] [+] EMBL AU068751 [ CTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTNGGCTTCGCCACCTCGCAACTNGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTNAAACCACAAGACGAAGAAGCAGCAGTTTGTGAA CTGCAGTACAAGAAGNTGTTGTGGGA ] [-] EMBL CB635303 [ TGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTGTCGGATTCGCCACCTCGCAACTCGCCGGCGTCAGCCTCGGCCTATCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATCAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATTGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGACGGTAATTAATACTGTAT ] [+] EMBL CB635302 [ GCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCAGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATCAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATTGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTG ] [-] EMBL CF279406 [ CCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCGTTTCGGTCGAGTTCCTAATTAAaaa ] [+] EMBL AK059567 [ AAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATGTAA] [-] EMBL CB000866 [ GCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATG ] [+] EMBL CA999736 [ AAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAAaaaaaaaa ] [-] EMBL AU225879 [ ccgcTCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTagcggc ] [-] EMBL CA998963 [ CAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGATGGATGGATG ] consensusID : consensus_13577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [TGAAGGAGTAGAAAAGCCGCACAATTCTTGATCCTCTTCTTCTTCTAATTCTCCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCTTTCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCTGTTCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCANATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGT] [+] EMBL CF279407 [TGAAGGAGTAGAAAAGCCGCACAATTCTTGATCCTCTTCTTCTTCTAATTCTCCCTCCAGGCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTCCTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTCTTTCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCTGTTCCAAGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCANATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAGTACTACAGT] consensusID : consensus_13577#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [AGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCANTTTAAAAAAAAAAAAAAAAA] [+] EMBL AU174942 [AGCTCCACCCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCANTTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13577#0 -TACGCCACGCCGCAGCCGCACAAGACTTGATCCTCTTCTTCTTCTTCTTCTTCCTCCAG 59 consensus_13577#1 TGAAGGAGTAGAAAAGCCGCACAATTCTTGATCCTCTTCTTCTTCTAATTCTCCCTCCAG 60 consensus_13577#2 ------------------------------------------------------------ consensus_13577#0 GCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTC 119 consensus_13577#1 GCTCCAGTGGCGATGGCGACCATGCTCTGCTCCTTCACGCCCGCCACCAGGGCTCCGCTC 120 consensus_13577#2 ------------------------------------------------------------ consensus_13577#0 CTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTC 179 consensus_13577#1 CTTCGCACTTCCTCCTCCTCTTCCTCTCTCGGCTTCGCCACCTCGCAACTCGCCGGCCTC 180 consensus_13577#2 ------------------------------------------------------------ consensus_13577#0 AGCCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCGGTCCCAAGCTCCAC 239 consensus_13577#1 TTTCTCGGCCTCTCCGCCGCAGCCACCACCGCGCCCTCCGCCGCCTGTTCCAAGCTCCAC 240 consensus_13577#2 ----------------------------------------------------AGCTCCAC 8 ******** consensus_13577#0 CCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAG 299 consensus_13577#1 CCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAG 300 consensus_13577#2 CCCATCCTCGCGCGCCGGATATGCCCCTTCACGGACAAGAAGACCAACAGGGCGAACAAG 68 ************************************************************ consensus_13577#0 GTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAG 359 consensus_13577#1 GTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAG 360 consensus_13577#2 GTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAG 128 ************************************************************ consensus_13577#0 CTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAG 419 consensus_13577#1 CTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAG 420 consensus_13577#2 CTGTGGTGGGAGGAAGGCAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAG 188 ************************************************************ consensus_13577#0 ACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAG 479 consensus_13577#1 ACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAG 480 consensus_13577#2 ACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAAAGGCCGGCATCGACCTCAACAAG 248 ************************************************************ consensus_13577#0 AAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCC 539 consensus_13577#1 AAATAAATCANATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCC 540 consensus_13577#2 AAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATTGCC 308 ********** ************************************************* consensus_13577#0 GCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGA 599 consensus_13577#1 GCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGA 600 consensus_13577#2 GCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGA 368 ************************************************************ consensus_13577#0 TGCAATTTATTGTAGAGTACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTT 659 consensus_13577#1 TGCAATTTATTGTAGAGTACTACAGT---------------------------------- 626 consensus_13577#2 TGCANTTTAAAAAAAAAAAAAAAAA----------------------------------- 393 **** **** * * * * * consensus_13577#0 CCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAGTCCGGCTCGAATTGTTTGCTACT 719 consensus_13577#1 ------------------------------------------------------------ consensus_13577#2 ------------------------------------------------------------ consensus_13577#0 AGTGTTTCATTTCGGTCGAGTTCCTAATTAATACTGTATGTTGGTTACGAATTATAAGAT 779 consensus_13577#1 ------------------------------------------------------------ consensus_13577#2 ------------------------------------------------------------ consensus_13577#0 GGATGGATGTAA 791 consensus_13577#1 ------------ consensus_13577#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||