|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1160 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGAACTGTCCTGCAAACATGCATTTATATTGCAAAGAGGACTCTTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA-GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGCTGCACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCCCTTGCCCTGCTGCTGNTGNTGATTTTCACCTT--CCCCTC-CCCTCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTGTCCTCGTGTTTGCCTGGTTGTC]
[-] EMBL AU057536 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGAACTGTCCTGCAAACATGCATTTATATTGCAAAGAGGACTCAGCGCAATTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGNGGNCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTANATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGNTTCAGTGCTGACGC ]
[-] EMBL BM419524 [ TTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTTGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACATCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGACGCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGA ]
[-] EMBL BI808966 [ TTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTG ATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTTGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACATCGCGAAACGTTCTAAACCTTGCATAAGCAG CCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGC ]
[+] EMBL CF294200 [ TTTTTTTTTCAAACAAAGGATGATTTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAA ]
[+] EMBL CF304226 [ CAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTTATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTT ]
[+] EMBL CF304557 [ CAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTANGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTT ]
[+] EMBL CF334318 [ ttttttTGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCG ]
[+] EMBL CF314140 [ ttttTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAAGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCG ]
[-] EMBL AU057535 [ GCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGT NTGACGCA ]
[-] EMBL CF334317 [ tTTCAAGAGATCGCCAAGGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGCTGCACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCCCTTGCCCTGCTGCTGNTGNTGATTTTCACCTT CCCCTCNCCCTCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTC ]
[-] EMBL CF314139 [ AGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGCTGCACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCTCTTGCCCTGCTGCTGCTGNTGATTTTNACCTTTCCCCCTC CCCTCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTGTCCTCGTGTTTGCCTGGTTGTC]
[-] EMBL CF294199 [ TCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTGTCCTCGTGTT ]
consensusID : consensus_13580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence
[TTCATAATCCAATATGCCAGTTAATTGAATTTTTATAACCCTTGAAAGTTAAGGTAACCTATACTTTACTTCTTGTAGGGGTGTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAGTGAGAATTCAGACATGTGAATCTGTGACACTCCT]
[+] EMBL AB048719 [TTCATAATCCAATATGCCAGTTAATTGAATTTTTATAACCCTTGAAAGTTAAGGTAACCTATACTTTACTTCTTGTAGGGGTGTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAGTGAGAATTCAGACATGTGAATCTGTGACACTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13580#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGAACTGTCCTGCAAACAT 60
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 GCATTTATATTGCAAAGAGGACTCTTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTT 120
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 TGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAA 180
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 AAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTC 240
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 TTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTG 300
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 GTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGA 360
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 AATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCG 420
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 TTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGG 480
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 CTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTG 540
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 TACTCTGCAAGAGGATGAGCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACC 600
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 TTCAAGAGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCA 660
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 CGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGG 720
consensus_13580#1 ---------------------------TTCATAATCCAATATGCCAGTTAATTGAATTTT 33
***** * *** * * * * ***** *
consensus_13580#0 TTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTG-AGGAATGGTCTCAC 779
consensus_13580#1 TATAACCCTTGAAAGTTA---AGGTAACCTATACTTTACTTCTTGTAGGGGTGTGTTCGT 90
* ** * * * ** * * ** * * *** *** ** **
consensus_13580#0 GTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGC-TG 838
consensus_13580#1 TTCTTTCCTAAAA--GCTCATCCTCTTG-CAGAGTACA--AGTGAGAATTCAGACATGTG 145
* * *** * * * * ** ** *** * *** *** * **
consensus_13580#0 CACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCC 898
consensus_13580#1 AATCTGTGACACTCCT-------------------------------------------- 161
* ** ******
consensus_13580#0 CTTGCCCTGCTGCTGNTGNTGATTTTCACCTTCCCCTCCCCTCTCCTCCTCCTCATCCAC 958
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 CATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGC 1018
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 GACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAG 1078
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 GCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTG 1138
consensus_13580#1 ------------------------------------------------------------
consensus_13580#0 TCCTCGTGTTTGCCTGGTTGTC 1160
consensus_13580#1 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||