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Oryza sativa
cluster # 13581 cluster # 13581       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13581#0 length = 845 sequences # 4  
consensus_13581#1 length = 749 sequences # 7  
consensus_13581#2 length = 664 sequences # 1  
consensus_13581#3 length = 237 sequences # 1  

consensusID : consensus_13581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 845
fasta sequence
                              [GAGTAGAAAACACAAGCGAATCCGGTGAGCTCATTAGCTTAGCTCTGTGAACTGTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAA-GGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCCAACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGAATTCTTCAGCCTAACCGATGCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTACAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGACGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATG]

[+] EMBL CF335033             [GAGTAGAAAACACAAGCGAATCCGGTGAGCTCATTAGCTTAGCTCTGTGAACTGTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCGGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTC AGGGTAAGGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK100818             [                               CATTAGCTTAGCTCTGTGAACTGTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAA GGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCCAACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGAATTCTTCAGCCTAACCGATGCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTACAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGACGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATG]
[+] EMBL OSS13118A            [                                        AGCTCTGTGAACTGTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAA GGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCG GGGGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCA CCTCGGCACGGTGAAGCTGCCCGCCAACATCGACATANCTCGGTTCGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGAATTTTTCAGCCTAACCGATGCGTATTCTTAATn                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSS13027A            [                                        AGCTCTGTGAACTNTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGTCATGGCGNTGGTGAGGCAGCTGCTGGTCCNCAGGCTCTCCTGCAGTGNCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGNCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAA GGTTGTTGGCCGTGG CATCAAGCCACCGCGNGACGACGCGNNGAAGGACGAGATTGTGCGNGCGAACGACGACGACGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_13581#0 GAGTAGAAAACACAAGCGAATCCGGTGAGCTCATTAGCTTAGCTCTGTGAACTGTGATTC TACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCA GCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTG CTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAAGGTTGTTGGCCGTGGC CATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTGTGCGGGCGGACGACGACGA CGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCCAACATCGACATAGCTCGGTTCGA GACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGAATTCTTCAGCCTAACCGAT GCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTACAGTGGGGGAACA GCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGG GCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACA TCGACTGCCTGGTGTCGCCGGCGACGGACGCCTCTGGGCCGGTATTCCGAGCGATCAGGA ACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCG AGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAA GCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAAT ACATG



consensusID : consensus_13581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 749
fasta sequence
                              [GCTCTGTGAACTGTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGG-GGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCC-AACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGG-CGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACCAAATTAAAGTTTATTTTCCCTTTAAAAAA]

[+] EMBL AK059299             [GCTCTGTGAACTGTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGG GGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCC AACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGG CGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGGGAAATACACGATACAGTACCAAATTAAAGTTTA                ]
[+] EMBL OSS10779A            [                       CCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGG GGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGNGGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCTCCGGCACGGTGAAGCTGCCCGCC AACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGG                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS11081A            [                       CCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGTTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAAGGTTNTTGGCCGTGGCCATCAAGCCANCGCGCGCCGCCGCGG GGAAGGACGAGATTNTNCGGGCGGACGACGACGACGACGGCGTtacttncgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF334158             [                                 GTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGCAGCTGCTGGTCC CAGGCTCTCCTGCAGTGGCCTGCCTGCTCCCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGG GGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCC AACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCGCTGAGGGTGGACAAGGTGGAGGGCCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTG                                                                                                                                                                                                                                                                              ]
[-] EMBL CB627465             [                                                      ACGCCGCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGCTGCAAGAACAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAATCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGG GGAAGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCC AACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGG CGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGGGAGAAATACATGATACAGTACCAAATTAAAGTT                  ]
[-] EMBL CB627464             [                                                                         GAGGCAGCTGTTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCTCTGCAAGAACAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAATCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGG GGAAGGACGAGATTGTGCGGGCGGACGACGACGATGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCC AACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGG CGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTGCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCTTGAGAGAAATACATGATACAGTTCCA                            ]
[-] EMBL CF334157             [                                                                                                                                                                                                                                     AGGACGAGATTGTGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCCAAACATCGACAAAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCGCTGAGGGTGGACAAGGTGGAGGG CGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTTTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACCAAATTAAAGTTTATTTTCCCTTTAAAAAA]


>consensus_13581#1 GCTCTGTGAACTGTGATTCTACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCG CCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTT CCCGCTGCAAGACCAGTTGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCAAGGG TAAGGTTGTTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTG TGCGGGCGGACGACGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCCAACA TCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCG CCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAG GATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGT CGCCGGCGACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGG ACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAAT GTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAG AAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACC AAATTAAAGTTTATTTTCCCTTTAAAAAA



consensusID : consensus_13581#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence
                              [ACGACGACGGCNTCAGCTTCGGNACGTTGAAGCTGCCCGCCAACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGATTCTTCAGCCTAACCGATGCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTACAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTAAGCGAACTGAAGAGCTAAAACGATACGAATTGTCACTTCACTTCAGAAATCTTCGGATGATGGCATTTTTTCATGTGCAAAAAACAGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACCAAATTAAAAAAAAAAA]

[+] EMBL AU101757             [ACGACGACGGCNTCAGCTTCGGNACGTTGAAGCTGCCCGCCAACATCGACATAGCTCGGTTCGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGATTCTTCAGCCTAACCGATGCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTACAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTAAGCGAACTGAAGAGCTAAAACGATACGAATTGTCACTTCACTTCAGAAATCTTCGGATGATGGCATTTTTTCATGTGCAAAAAACAGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACCAAATTAAAAAAAAAAA]


>consensus_13581#2 ACGACGACGGCNTCAGCTTCGGNACGTTGAAGCTGCCCGCCAACATCGACATAGCTCGGT TCGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGATTCTTCAGCCTAACC GATGCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTACAGTGGGGGA ACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTAAGCGAACTGA AGAGCTAAAACGATACGAATTGTCACTTCACTTCAGAAATCTTCGGATGATGGCATTTTT TCATGTGCAAAAAACAGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGCGG TGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGG CCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCAC CTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATG CACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATT CTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACCAAATTAAAAAAA AAAA



consensusID : consensus_13581#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence
                              [CCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCNCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGNTGCAAGACCAGTTNNTGGAGCAGCGGCGAGAGNCTCCCTNGTTTNAAGTCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGNGNGNCGCCGGGGAGAAGGACGAGATTNTTCGNGCNGACGACGACGAC]

[+] EMBL OSS10780A            [CCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCNCCATGGCGGTGGTGAGGCAGCTGCTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGNTGCAAGACCAGTTNNTGGAGCAGCGGCGAGAGNCTCCCTNGTTTNAAGTCAAGGGTAAGGTTGTTGGCCGTGGCCATCAAGCCACCGNGNGNCGCCGGGGAGAAGGACGAGATTNTTCGNGCNGACGACGACGAC]


>consensus_13581#3 CCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCNCCATGGCGGTGGTGAGGCAGCTG CTGGTCCACAGGCTCTCCTGCAGTGGCCTGCCTGCTTCCCGNTGCAAGACCAGTTNNTGG AGCAGCGGCGAGAGNCTCCCTNGTTTNAAGTCAAGGGTAAGGTTGTTGGCCGTGGCCATC AAGCCACCGNGNGNCGCCGGGGAGAAGGACGAGATTNTTCGNGCNGACGACGACGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13581#1      -----------------------------------------GCTCTGTGAACTGTGATTC 19
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      GAGTAGAAAACACAAGCGAATCCGGTGAGCTCATTAGCTTAGCTCTGTGAACTGTGATTC 60
consensus_13581#2      ----------------------------------------------------------AC 2
                                                                                   

consensus_13581#1      TACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGC- 78
consensus_13581#3      ----CCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCNCCATGGCGGTGGTGAGGC- 55
consensus_13581#0      TACTCCACTTCGAAGTCCAAAGCCTCTGAGGCAGAACGCCGCCATGGCGGTGGTGAGGC- 119
consensus_13581#2      GACGACGGCNTCAGCTTCGGNACGT-TGAAGCTGCCCGCCAACATCGACATAGCTCGGTT 61
                            *      *  * *    * * *** ** *  ****  *** *   * *   **  

consensus_13581#1      --AGCTGCTGGTCCACAGGCTCTCCTGCA-GTGGCC-TGCCTGCTTCC-CGCTGCAA--G 131
consensus_13581#3      --AGCTGCTGGTCCACAGGCTCTCCTGCA-GTGGCC-TGCCTGCTTCC-CGNTGCAA--G 108
consensus_13581#0      --AGCTGCTGGTCCACAGGCTCTCCTGCA-GTGGCC-TGCCTGCTTCC-CGCTGCAA--G 172
consensus_13581#2      CGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGATTCTTCAGCCTAACCG 121
                         **  **** **  *  * *   ***** *  *** **  ** ***  *     **  *

consensus_13581#1      ACCAGT-TGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCA--AGGGTAAGGTTG 188
consensus_13581#3      ACCAGT-TNNTGGAGCAGCGGCGAGAGNCTCCCTNGTTTNAAGTCA--AGGGTAAGGTTG 165
consensus_13581#0      ACCAGT-TGCTGGAGCAGCGGCGAGAGGCTCCCTGGCTTGAAGTCA--AGGGTAAGGTTG 229
consensus_13581#2      ATGCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTACAGTGGGGGAA 181
                       *   ** *  ** *  *    ***     * *   * *   * * *  *  **  **   

consensus_13581#1      TTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTGTGCGGGCG 248
consensus_13581#3      TTGGCCGTGGCCATCAAGCCACCGNGNGNCGCCGGGGAGAAGGACGAGATTNTTCGNGCN 225
consensus_13581#0      TTGGCCGTGGCCATCAAGCCACCGCGCGCCGCCGCGGGGAAGGACGAGATTGTGCGGGCG 289
consensus_13581#2      C-AGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCC--CTGAGGGTAAGCGAACT 238
                          ***   ****    ******  *   * **  *         ***  *   **  * 

consensus_13581#1      GACGA-CGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCCAACATCGACAT 307
consensus_13581#3      GACGA-CGACGAC----------------------------------------------- 237
consensus_13581#0      GACGA-CGACGACGACGGCGTCAGCCTCGGCACGGTGAAGCTGCCCGCCAACATCGACAT 348
consensus_13581#2      GAAGAGCTAAAACGATACGAATTGTCACTTCACTTCAGAAATCTTCGGATGATGGCATTT 298
                       ** ** * *  **                                               

consensus_13581#1      AGCTCGGTTCGAGACGCTGCTCTTCCAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCT 367
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      AGCTCGGTTCGAGACGCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGAATTCTTC 408
consensus_13581#2      TTTCATGTGCAAAAAACAGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGC 358
                                                                                   

consensus_13581#1      GCCGCTCCCGGTGCCCCTGAGGGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCAT 427
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      AGCCTAACCGATGCGTATTCTGAATGAATTCCGATGCATTGCTGCGTTGACACTTACTAC 468
consensus_13581#2      GGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGAC 418
                                                                                   

consensus_13581#1      GGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCGACTGCCTGGTGTCGCCGGC 487
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      AGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAGGGTGG 528
consensus_13581#2      GGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCC 478
                                                                                   

consensus_13581#1      GACGGCCGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGA 547
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      ACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGG 588
consensus_13581#2      ACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTA 538
                                                                                   

consensus_13581#1      GCCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCA 607
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      TGCTGGTCTACATCGACTGCCTGGTGTCGCCGGCGACGGACGCCTCTGGGCCGGTATTCC 648
consensus_13581#2      TGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAA 598
                                                                                   

consensus_13581#1      GTATGCACAAGTTTGAGTGTCCAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTG 667
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      GAGCGATCAGGAACGGTCCTATGAAGGACCAGGAGCCACCTGGGGAGCCCAGGATCATGA 708
consensus_13581#2      TTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACCAAATTAAAAA 658
                                                                                   

consensus_13581#1      GAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACATGATACAGTACCAAATTAA 727
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      GAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTCCAAGA 768
consensus_13581#2      AAAAAA------------------------------------------------------ 664
                                                                                   

consensus_13581#1      AGTTTATTTTCCCTTTAAAAAA-------------------------------------- 749
consensus_13581#3      ------------------------------------------------------------
consensus_13581#0      GAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTC 828
consensus_13581#2      ------------------------------------------------------------
                                                                                   

consensus_13581#1      -----------------
consensus_13581#3      -----------------
consensus_13581#0      CCTGAGAGAAATACATG 845
consensus_13581#2      -----------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)