Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13609 cluster # 13609       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13609#0 length = 1002 sequences # 7  
consensus_13609#1 length = 785 sequences # 4  
consensus_13609#2 length = 422 sequences # 1  
consensus_13609#3 length = 220 sequences # 1  

consensusID : consensus_13609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1002
fasta sequence
                              [TTTTTTAAAGACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCTGTTTAAGATTCAAAAGGCAACTGAGATCGATAAGGTGAATAATCAGGATAGAGACGTATGGCTAACAAAAAATCTCCACAGGGATTACCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTC-CACCTTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGATGAGGCCTTCCCGCCAGTTTTTAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTTGACACGAGGCAGTTCTTCCACGAAACCTTCAGAATCAGAATCGGAATCAATATTAACATGCGGGATATTGGCAGAGCTGTTTTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCCCTTGGAGGCCGCGGAGAAGCCCCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGAGGAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGGAG-GGTGGGAACAACCAGAGGGAGGAGTCTTTCTACTCCTTCAGTCCA]

[+] EMBL CF334697             [TTTTTTAAAGACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCTGTTTAAGATTCAAAAGGCAACTGAGATCGATAAGGTGAATAATCAGGATAGAGACGTATGGCTAACAAAAAATCTCCACAGGGATTACCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTC CACCTTTGCCAGCATTCC                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF328954             [                 ttttTTGCGAATCTCCATTTCTTGATCCACAACATATCTGTTTAAGATTCAGAAGGCAACTGAGATCGATAAGGTGAATAATCAGGATAGAGACGTATGGCTAACAAAAAATCTCCACAGGGATTACCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF328953             [                                                                                                                                                                                                                                                                                                                                                                                                                 GGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTC CACCTTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGATGAGGCCTTCCCGCCAGTTTTTAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTTGACACGAGGCAGTTCTTCCACGAAACCTTCAGAATCAGAATCGGAATCAATATTAACATGCGGGATATTGGCAGAGTTGTTTTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCCCTTGGAGGCCGCGGAGAAGCCCCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGGGGAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGGAG GGTGGGAACAACCAGAGGGAGGAGTCTTTCTACTCCTTCAGTCCA]
[-] EMBL CF334698             [                                                                                                                                                                                                                                                                                                                                                                                                                                     TCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTC CACCTTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGATGAGGCCTTCCCGCCAGTTTTTAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTTGACACGAGGCAGTTCTTCCACGAAACCTTCAGAATCAGAATCGGAATCAATATTAACATGCGGGATATTGGCAGAGCTGTTTTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCCCTTGGAGGCCGCGGAGAAGCCCCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGAGGAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGGAG GGTGGGAACAACC                                ]
[-] EMBL CF334598             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTCNCACCTTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGATGAGGCCTTCCCGCCAGTTTTTAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTTGACACGAGGCAGTTCTTCCACGAAACCTTCAGAATCAGAATCGGAATCAATATTAACATGCGGGATATTGGCAGAGCTGTTTTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCCCTTGGAGGCCGCGGAGAAGCCCCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGAGGAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGGAG GGTGGGAACAACCAGAGG                           ]
[-] EMBL CF333087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTC CACCTTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGATGAGGCCTTCCCGCCAGTTTTTAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTTGACACGAGGCAGTTCTTCCACGGAACGTTCAGAATCAGAATCGGAATCAATATTAACATGCGGGATATTGGCAGAGCTGTTTTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCCCTTGGAGGCCGCGGAGAAGCCCCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGAGGAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGGAG GGTGGGAACAACCAGAGGGA                         ]
[-] EMBL CF279244             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGATCCCCTCTCCGCCATCCCCCGCGTCCGAAGGAGGAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGAAGTGTTGGGAACAACCAGAGG                           ]


>consensus_13609#0 TTTTTTAAAGACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCTGTTT AAGATTCAAAAGGCAACTGAGATCGATAAGGTGAATAATCAGGATAGAGACGTATGGCTA ACAAAAAATCTCCACAGGGATTACCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTT TATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGC CTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTCTCAGGTCCAACGTTCGCTAT CAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTCTAGGACTTGTTTCAC AGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGA CTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTG CAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTC AAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTCCACC TTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGATGAGGCCTTCCCGCCAGTTTT TAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTTGACACGAGGCAGTTCTTCCAC GAAACCTTCAGAATCAGAATCGGAATCAATATTAACATGCGGGATATTGGCAGAGCTGTT TTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCCCTTGGAGGCCGCGGAGAAGCC CCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGAGGAGGAGGTGGGCGGCGGCGGC GGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGGAGGGT GGGAACAACCAGAGGGAGGAGTCTTTCTACTCCTTCAGTCCA



consensusID : consensus_13609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 785
fasta sequence
                              [TTTTGGGTAAAAAACCCAAAAGAACCATCTCATTGTTTAAGCCAGTTACCCCAAGGGTAGCAATTAGCAATTCTGAGTAGGCTACTTCAGCCATTTCTAGCAACA-TTGCAGTCAGATACGGTAGTATCTGAACTCAGGTTCAACCTATCAGACCTAGATAAGTAAAGTGCACATGGCAC-TGG-TGGTTTTTTTTGCATACACAGCGCAACCTGATTTGACAAAACATTCAGAACATTAAAGACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACC-CTTTCCACCTTTGCCAGCATTCCCTCCTTTGCCAGTTCGTCAAANANATGTTCC]

[-] EMBL BI804249             [TTTTGGGTAAAAAACCCAAAAGAACCATCTCATTGTTTAAGCCAGTTACCCCAAGGGTAGCAATTAGCAATTCTGAGTAGGCTACTTCAGCCATTTCTAGCAACA TTGCAGTCAGATACGGTAGTATCTGAACTCAGGTTCAACCTATCAGACCTAGATAAGTAAAGTGCACATGGCAC TGG TGGTTTTTTTTGCATACACAGCGCAACCTGATTTGACAGAACATTCAGAACATTAAAGACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAA GGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTC                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF279243             [                                                                ttttttTTTTGAGTAGGCTACTTCAGCCATTTCTAGCAACATTTGCAGTTAGATACGGTAGTCTCTGAACTCAGGTTCAACCTATCAGACCTAGATAAGTAAAGTGCACATGGCACTTGGTTGTTTTTTTTTGCATACACAGCGCAACCTGATTTGACAAAACATTCAGAACATTAAAGACAAACGCAAGTTGCGAATCTCCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF333088             [                                                                                                                                                                                               TTTTTGCATACACAGCGCAACCTGATTTGACAAAACATTCAGAACATTAAAGACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACC CTTTCCACCTTTGCCAGCATT                                 ]
[-] EMBL AA754546             [                                                                                                                                                                                                                                                           AAGTTG G AT TCCATTTCTTGATCCACAA ATATCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCTTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACTTCTTCAATGGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGNGTAAAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATNGAGCTCAAGCTTTAGCTCTGCATCAGACNTTNCAGAAACTNGAGNAGATGCAGAACCNGGNTCCACCTTTGCCANCATTCCCTCCTTTGCCAGTTCGTCAAANANATGTTCC]


>consensus_13609#1 TTTTGGGTAAAAAACCCAAAAGAACCATCTCATTGTTTAAGCCAGTTACCCCAAGGGTAG CAATTAGCAATTCTGAGTAGGCTACTTCAGCCATTTCTAGCAACATTGCAGTCAGATACG GTAGTATCTGAACTCAGGTTCAACCTATCAGACCTAGATAAGTAAAGTGCACATGGCACT GGTGGTTTTTTTTGCATACACAGCGCAACCTGATTTGACAAAACATTCAGAACATTAAAG ACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCGGCATAGCTTCACTG GAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTT TCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTC TCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGA GGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATAT TGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCC ATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAG TTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCT GATGCAGAACCCTTTCCACCTTTGCCAGCATTCCCTCCTTTGCCAGTTCGTCAAANANAT GTTCC



consensusID : consensus_13609#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTGCGAATCTCCATTTCTTGATCCACAACAGATCTGTTTAAAACTCAAAAGGCAACTGAGATCGATAAGGGGAATAATCAGGATAGAGACCTATGGCTAACAAAAAATCTCCACAGGGATTACCGGCATAACTTCACTGGAGATTCACTTAACAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAATGGCCTTCAGGGATGGGACTAACGCATAAACCTCTTCAATGGGCTCAAGTCCAACGTTCGCTATCAAGCACATTTCTCCATCACTAACACCATATTTTCTAAAAGGGTCTAAGACTTGTTTCACAAACTGTGCGGGGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTC]

[+] EMBL CF334599             [TTTTTTTTTTTTTTTTTTTTTTGCGAATCTCCATTTCTTGATCCACAACAGATCTGTTTAAAACTCAAAAGGCAACTGAGATCGATAAGGGGAATAATCAGGATAGAGACCTATGGCTAACAAAAAATCTCCACAGGGATTACCGGCATAACTTCACTGGAGATTCACTTAACAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAATGGCCTTCAGGGATGGGACTAACGCATAAACCTCTTCAATGGGCTCAAGTCCAACGTTCGCTATCAAGCACATTTCTCCATCACTAACACCATATTTTCTAAAAGGGTCTAAGACTTGTTTCACAAACTGTGCGGGGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTC]


>consensus_13609#2 TTTTTTTTTTTTTTTTTTTTTTGCGAATCTCCATTTCTTGATCCACAACAGATCTGTTTA AAACTCAAAAGGCAACTGAGATCGATAAGGGGAATAATCAGGATAGAGACCTATGGCTAA CAAAAAATCTCCACAGGGATTACCGGCATAACTTCACTGGAGATTCACTTAACAGCTTTT ATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAATGGCC TTCAGGGATGGGACTAACGCATAAACCTCTTCAATGGGCTCAAGTCCAACGTTCGCTATC AAGCACATTTCTCCATCACTAACACCATATTTTCTAAAAGGGTCTAAGACTTGTTTCACA AACTGTGCGGGGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGAC TC



consensusID : consensus_13609#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence
                              [CCGCCCACGCGTCCGGTGTATGCAAAAAAAACNACCAAGTGCCATGTGCACTTTACTTATCTAGGTCTGATAGGTTGAACCTGAGTTCAGATACTACCGTATCTGACTGCAAATGTGGCTAGAAATGGCTGAAGTAGCCTACTCAGAATTGCTAATTGCTACCCTTGGGGTAACTGGCTTAAACAATGAGATGGTTCTTTTGGCTTTTTTAAAAAAAAAA]

[+] EMBL BQ906384             [CCGCCCACGCGTCCGGTGTATGCAAAAAAAACNACCAAGTGCCATGTGCACTTTACTTATCTAGGTCTGATAGGTTGAACCTGAGTTCAGATACTACCGTATCTGACTGCAAATGTGGCTAGAAATGGCTGAAGTAGCCTACTCAGAATTGCTAATTGCTACCCTTGGGGTAACTGGCTTAAACAATGAGATGGTTCTTTTGGCTTTTTTAAAAAAAAAA]


>consensus_13609#3 CCGCCCACGCGTCCGGTGTATGCAAAAAAAACNACCAAGTGCCATGTGCACTTTACTTAT CTAGGTCTGATAGGTTGAACCTGAGTTCAGATACTACCGTATCTGACTGCAAATGTGGCT AGAAATGGCTGAAGTAGCCTACTCAGAATTGCTAATTGCTACCCTTGGGGTAACTGGCTT AAACAATGAGATGGTTCTTTTGGCTTTTTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13609#0      ------------------------------------------------------------
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      TTTTGGGTAAAAAACCCAAAAGAACCATCTCATTGTTTAAGCCAGTTACCCCAAGGGTAG 60
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      ------------------------------------------------------------
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      CAATTAGCAATTCTGAGTAGGCTACTTCAGCCATTTCTAGCAACATTGCAGTCAGATACG 120
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      ---TTTTTTAAAGACAAACGCAAGTTG-CGAATCTCCATTTCTTGATC---CACAACA-- 51
consensus_13609#2      ----TTTTTTTTTTTTTTTTTTTTTTG-CGAATCTCCATTTCTTGATC---CACAACA-- 50
consensus_13609#1      GTAGTATCTGAACTCAGGTTCAACCTATCAGACCTAGATAAGTAAAGTGCACATGGCACT 180
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      ---TATCTGTTTAAGATTCAAAAGGCAACTGAGATCGATAAGGT-----GAATAATCAGG 103
consensus_13609#2      ---GATCTGTTTAAAACTCAAAAGGCAACTGAGATCGATAAGGG-----GAATAATCAGG 102
consensus_13609#1      GGTGGTTTTTTTTGCATACACAGCGCAACCTGATTTGACAAAACATTCAGAACATTAAAG 240
consensus_13609#3      ----------------------------------CCGCCCACGCGTCCGGTGTATGCAAA 26
                                                           *   *        *   *   *  

consensus_13609#0      ATAGA-GACGTATGGCTAACAAAAAATCTCCA---CAGGGATTACCGGCATAGCTTCACT 159
consensus_13609#2      ATAGA-GACCTATGGCTAACAAAAAATCTCCA---CAGGGATTACCGGCATAACTTCACT 158
consensus_13609#1      ACAAA-CGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCGGCATAGCTTCACT 299
consensus_13609#3      AAAAACNACCAAGTGCCATGTGCACTTTACTTATCTAGGTCTGATAGGTTGAACCT---- 82
                       * * *   *     ** *        *         *      *  **   * * *    

consensus_13609#0      GGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACT 219
consensus_13609#2      GGAGATTCACTTAACAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACT 218
consensus_13609#1      GGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACT 359
consensus_13609#3      --GAGTTCAGATACTACCGTATCTGACTGCAAATGTGGCTAGAAATGGC-TGAAGTAGCC 139
                            ****  **  * * * * ** * ****  *  *  ***     * *** *   * 

consensus_13609#0      TTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGT 279
consensus_13609#2      TTCGTTGAGTGATCTAATGGCCTTCAGGGATGGGACTAACGCATAAACCTCTTCAATGGG 278
consensus_13609#1      TTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGT 419
consensus_13609#3      TACTCAGAATTG-CTAATTGCTACCCTTGGGGTAACTGGC---TTAAACAATGAGATGGT 195
                       * *   ** *   *** * **   *   *  *  ***  *   * ** *  *   **** 

consensus_13609#0      CTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAG 339
consensus_13609#2      CTCAAGTCCAACGTTCGCTATCAAGCACATTTCTCCATCACTAACACCATATTTTCTAAA 338
consensus_13609#1      CTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAG 479
consensus_13609#3      TCT---TTTGGC-TTTTTTAAAAAAAAAA------------------------------- 220
                             *    * **   **  **  * *                               

consensus_13609#0      AGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATA 399
consensus_13609#2      AGGGTCTAAGACTTGTTTCACAAACTGTGCGGGGGAAAACTGATTTCCTTCTTTCACATA 398
consensus_13609#1      AGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATA 539
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      TTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGC 459
consensus_13609#2      TTGGAAAGCCTTATCAAATGACTC------------------------------------ 422
consensus_13609#1      TTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGC 599
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      CATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGA 519
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      CATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGA 659
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      GTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGC 579
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      GTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGC 719
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      TGATGCAGAACCCTTTCCACCTTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGA 639
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      TGATGCAGAACCCTTTCCACCTTTGCCAGCATTCCCTCCTTTGCCAGTTCGTCAAANANA 779
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      TGAGGCCTTCCCGCCAGTTTTTAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTT 699
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      TGTTCC------------------------------------------------------ 785
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      GACACGAGGCAGTTCTTCCACGAAACCTTCAGAATCAGAATCGGAATCAATATTAACATG 759
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      ------------------------------------------------------------
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      CGGGATATTGGCAGAGCTGTTTTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCC 819
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      ------------------------------------------------------------
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      CTTGGAGGCCGCGGAGAAGCCCCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGAG 879
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      ------------------------------------------------------------
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      GAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTC 939
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      ------------------------------------------------------------
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      CGTGCGTGCGAGAGGGAGGGTGGGAACAACCAGAGGGAGGAGTCTTTCTACTCCTTCAGT 999
consensus_13609#2      ------------------------------------------------------------
consensus_13609#1      ------------------------------------------------------------
consensus_13609#3      ------------------------------------------------------------
                                                                                   

consensus_13609#0      CCA 1002
consensus_13609#2      ---
consensus_13609#1      ---
consensus_13609#3      ---
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)