These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2438 fasta sequence [GGCCGCGCGGCGCCGCGCATTGCTTCACCTCCGCTCCGCGCGGCTGAAACCGAAAAAAACCCAATTTGGATCGAAGCGGGGAGAGAGGACTTGAGGAGACGCGTCGTGGAGGGAAGTTTTTGAAAAAAATTTTCCCCAACCCGCTGGGCGCGATGCCGTCATGATCCCCCCCCTCGCCTCGCTGCCCAAAAATTTTTCAATCTCTCTCGCCCACATTAATCACCTTCCTCACGAGGCCAACGAGCAGAAATCCCATTTCATCATCATTCATACCAATCCTCTCGGTTTCTTCCGCGTCCCCGGATTCAGTTTCCTCCTCCTCTCCCCCCCTCTCGATCCCTCCTCCTCTTCCCCTCGTTCCAGCGCGCTCGCCGTCGCCCGCCGCCGTCCGCCGACCATGGAAGCAGCTGGAGTGGAGGTGAACGGAGGAGGAGGAGGCGACGTCGTGGTGGTGGTGCCGCAGCAGCATGAGGTGGCGGCGAAGCAGGCGGCGGCGGCGGCGGCGGCGAAGGGGAAGTCCGTCGAATCCAAGGGGGTCCGCGTCGTCGGCGGCCGGATCTATGATCCGGAGAACGGCAAGACCTGCCACCAGTGCCGTCAGAAGACGATGGACTTCGCCGCGTCATGCCACAAGATCAAGAAGAACAACAAGCAGTGCACGATCCAGTACTGCCGCAAGTGTCTCTTTAACAGGTACGGCCAGGAAGCCGAGAAGGTGGCCAATGACGGCACCTGGACTTGCCCCAAGTGCAAGGATATCTGCAATTGCAGCTTCTGCATGAAGAAGAAGGGGCTGCCGCCCACCGGAATACTTGCCCATGCTGCTAAGGCTTCAGGTTGTGCTTCGGTCCATCATTTACTGAAAAAGGGGAAAGAAGCGGTGGCTGCCGCGCAGAGGAGCACCCAGAAAGTGAGATCTACACCTGTGAAGAAGAGCCCAAAGAGGGCCATACAGCCAGATGCTGCTGCTGATGAACCTTTGGCTGAAGGGGATGAGAATGTATGCATTGATTTCAATGCTGCTCCAGTGAAGAAGCAGAAGAGAAGCAGGAAGGTGGGTAATGGTGTGGCTCTGACGAAGGATGAAAGCCCTGATGCTCCCAAGGAACAAGTTGTTCTGCCCAAGGGCACTCCAGTCACTAGTGTTGCCGGTGCAGAGTGGGAGCCTGAAGATGTTGGTCTTGCACTTCAGTTCTTCGAATTCTGCCGCACATTTGCTGAGATTTTCCAAGTACGCAAGGGTCAACCAGAAAGAATCCTTCGGGACATAGCTGGAGGTCGTGGACTTCGAGTGGTGTCCTCAGTCATCGCTGACTTCCACATAACTTTGTTATCCATCATCCAAGAAGGCCGAGGAATCAAGCCTATCACATATTCAAGAGATAATGATGCATGGATTGTTGATACTGGAAAATGCATAAGCGAGTCAATCTTTGTCCCAGAGGGACTTCCCCTTGACTCCCTAAGTCAGGGGGTATCGGGATATAAAAATCTGAGCCCTTCTTGTAAGCTCAGTGTTCTGAACTTTTTGTGTGATGAAAGTCTTTCTACTGAGAAGTTGAGGAGCTGCATATTATCTGAAACAAAAAACCCCTCCAGAGAAAAAGCTCATTCTGCAAAAGAGAAGGAGGAGCCAAAAGAAGAAACTATAAAGAACACAGATGAAGCAGTGCTTTTGAAAACTGAAGGAGCAGCTGTTGCTATTGAGGAAGATAAGAATGGCATTTCTCAACAAAAGGATGTGAAAGAAGTAAAGAATGCAGACACAAATGAAAAGAAGCATGGAGGTTTCCTTAGGACTAATCCTTTCATGGTAGACAAAAAGGTAATCTATTGGAAGCTGGATGACTATTGTAATAACACAACAATGATGCTCCAAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGATGAAAAGAAAATAGTTGAAAACTATTTATCCACAAGGCCTAAACGCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGT-GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAGTGCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK067846 [GGCCGCGCGGCGCCGCGCATTGCTTCACCTCCGCTCCGCGCGGCTGAAACCGAAAAAAACCCAATTTGGATCGAAGCGGGGAGAGAGGACTTGAGGAGACGCGTCGTGGAGGGAAGTTTTTGAAAAAAATTTTCCCCAACCCGCTGGGCGCGATGCCGTCATGATCCCCCCCCTCGCCTCGCTGCCCAAAAATTTTTCAATCTCTCTCGCCCACATTAATCACCTTCCTCACGAGGCCAACGAGCAGAAATCCCATTTCATCATCATTCATACCAATCCTCTCGGTTTCTTCCGCGTCCCCGGATTCAGTTTCCTCCTCCTCTCCCCCCCTCTCGATCCCTCCTCCTCTTCCCCTCGTTCCAGCGCGCTCGCCGTCGCCCGCCGCCGTCCGCCGACCATGGAAGCAGCTGGAGTGGAGGTGAACGGAGGAGGAGGAGGCGACGTCGTGGTGGTGGTGCCGCAGCAGCATGAGGTGGCGGCGAAGCAGGCGGCGGCGGCGGCGGCGGCGAAGGGGAAGTCCGTCGAATCCAAGGGGGTCCGCGTCGTCGGCGGCCGGATCTATGATCCGGAGAACGGCAAGACCTGCCACCAGTGCCGTCAGAAGACGATGGACTTCGCCGCGTCATGCCACAAGATCAAGAAGAACAACAAGCAGTGCACGATCCAGTACTGCCGCAAGTGTCTCTTTAACAGGTACGGCCAGGAAGCCGAGAAGGTGGCCAATGACGGCACCTGGACTTGCCCCAAGTGCAAGGATATCTGCAATTGCAGCTTCTGCATGAAGAAGAAGGGGCTGCCGCCCACCGGAATACTTGCCCATGCTGCTAAGGCTTCAGGTTGTGCTTCGGTCCATCATTTACTGAAAAAGGGGAAAGAAGCGGTGGCTGCCGCGCAGAGGAGCACCCAGAAAGTGAGATCTACACCTGTGAAGAAGAGCCCAAAGAGGGCCATACAGCCAGATGCTGCTGCTGATGAACCTTTGGCTGAAGGGGATGAGAATGTATGCATTGATTTCAATGCTGCTCCAGTGAAGAAGCAGAAGAGAAGCAGGAAGGTGGGTAATGGTGTGGCTCTGACGAAGGATGAAAGCCCTGATGCTCCCAAGGAACAAGTTGTTCTGCCCAAGGGCACTCCAGTCACTAGTGTTGCCGGTGCAGAGTGGGAGCCTGAAGATGTTGGTCTTGCACTTCAGTTCTTCGAATTCTGCCGCACATTTGCTGAGATTTTCCAAGTACGCAAGGGTCAACCAGAAAGAATCCTTCGGGACATAGCTGGAGGTCGTGGACTTCGAGTGGTGTCCTCAGTCATCGCTGACTTCCACATAACTTTGTTATCCATCATCCAAGAAGGCCGAGGAATCAAGCCTATCACATATTCAAGAGATAATGATGCATGGATTGTTGATACTGGAAAATGCATAAGCGAGTCAATCTTTGTCCCAGAGGGACTTCCCCTTGACTCCCTAAGTCAGGGGGTATCGGGATATAAAAATCTGAGCCCTTCTTGTAAGCTCAGTGTTCTGAACTTTTTGTGTGATGAAAGTCTTTCTACTGAGAAGTTGAGGAGCTGCATATTATCTGAAACAAAAAACCCCTCCAGAGAAAAAGCTCATTCTGCAAAAGAGAAGGAGGAGCCAAAAGAAGAAACTATAAAGAACACAGATGAAGCAGTGCTTTTGAAAACTGAAGGAGCAGCTGTTGCTATTGAGGAAGATAAGAATGGCATTTCTCAACAAAAGGATGTGAAAGAAGTAAAGAATGCAGACACAAATGAAAAGAAGCATGGAGGTTTCCTTAGGACTAATCCTTTCATGGTAGACAAAAAGGTAATCTATTGGAAGCTGGATGACTATTGTAATAACACAACAATGATGCTCCAAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGATGAAAAGAAAATAGTTGAAAACTATTTATCCACAAGGCCTAAACGCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGT GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTC ] [+] EMBL CF196141 [ GCATTGATTTCAATGCTGCTCCAGTGAAGAAGCAGAAGAGAAGCAGGAAGGTGGGTAATGGTGTGGCTCTGACGAAGGATGAAAGCCCTGATGCTCCCAAGGAACAAGTTGTTCTGCCCAAGGGCACTCCAGTCACTAGTGTTGCCGGTGCAGAGTGGGAGCCTGAAGATGTTGGTCTTGCACTTCAGTTCTTCGAATTCTGCCGCACATTTGCTGAGATTTTCCAAGTACGCAAGGGTCAACCAGAAAGAATCCTTCGGGACATAGCTGGAGGTCGTGGACTTCGAGTGGTGTCCTCAGTCATCGCTGACTTCCACATAACTTTGTTATCCATCATCCAAGAAGGCCGAGGAATCAAGCCTATCACATATTCAAGAGATAATGATGCATGGATTGTTGATACTGGAAAATGCATAAGCGAGTCAATCTTTGTCCCANNNNGACTTCCCCTTGACTCCCTAAGTCNNNNNGTATCGGGATATAAAAATCTGAGCCCTTCTTGTAAGCTNNNNGTTCTGNNCTTTTTGTGTGAn ] [+] EMBL CA757072 [ GGAAGATAAGAATGGCATTTCTCAACAAAAGGATGTGAAAGAAGTAAAGAATGCAGACACAAATGAAAAGAAGCATGGAGGTTTCCTTAGGACTAATCCTTTCATGGTAGACAAAAAGGTAATCTATTGGAAGCTGGATGACTATTGTAATAACACAACAATGATGCTCCAAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGATGAAAAGAAAATAGTTGAAAACTATTTATCCACAAGGCCTAAACGCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGCATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGANAATGTTGCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGC ] [-] EMBL CA762099 [ ATGTGAAAGAAGTAAAGAATGCAGGCCCAAATGAAAAGAAGCATGGAGGTTTCCTTAGGACTAATCCTTTCATGGTAGACAAAAAGGTAATCTATTGGAAGCTGGATGACTATTGTAATAACACAACAATGATGCTCCAAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGATGAAAAGAAAATAGTTGAAAACTATTTATCCCCAAGGCCTAAACACAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGT GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCA AAAAAAAAAAAAAAAAAA ] [-] EMBL CA762100 [ ATGTGAAAGAAGTAAAGAATGCAGGCCCAAATGAAAAGAAGCATGGAGGTTTCCTTAGGACTAATCCTTTCATGGTAGACAAAAAGGTAATCTATTGGAAGCTGGATGACTATTGTAATAACACAACAATGATGCTCCAAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGATGAAAAGAAAATAGTTGAAAACTATTTATCCCCAAGGCCTAAACACAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGT GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCA AAAAAAAAAAAAAAAAAA ] [+] EMBL AU031187 [ ccgAAGCTGCACAATAGTCTACTGATCATACTCTCTNGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAACGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGT GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAGTGCTTTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031186 [ AATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAACGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAG CGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGTGGGTAAAAGTT AACTGTTGTGTGT ANATGTGACTGTCGAT ATGACTATCCATCCA TCAG TCAGNGCTTAAAAAAAAAA ] [+] EMBL AU161986 [ AGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGT GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAGTGCCTTAAAAAAAAAAAA ] [+] EMBL CF328893 [ AGTCAGTCAACCCCCGTTACCGTGGTGT GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAGTGCAAAAAAAAAAAAAAA ] [-] EMBL CF328892 [ GTCAGTCAACCCCCGTTACCGTGGTGT GGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAGTGCAAAAAAAAAAAAAAAA ] consensusID : consensus_13611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1386 fasta sequence [CNGNGACGCGTGGGTGGATCGAAGCGGGGAGAGAGGACTTGAGGAGANGCGTCGTGGAGGGAAGTTTTTGAAAAAAATTTTCCCCAACCCGCTGGGCGCGATGCCGTCATGATCCCCCCCCTCGCCTCGCTGCCCAAAAATTTTTCAATCTCTCTCGCCCACATTAATCACCTTCCTCACGAGGCCAACGAGCAGAAATCCCATTTCATCATCATTCATACCAATCCTCTCGGTTTCTTCCGCGTCCCCGGATTCAGTTTCCTCCTNCTCTCCCCCCCTCTCGATCCCTCCTCCTCTTCCCCTCGTTCCAGCGCGCTCGCCGTCGCCCGCCGCCGTCCGCCGACCATGGAAGCAGCTGGAGTGGAGGTGAACGGAGGAGGAGGAGGCGACGTCGTGGTGGTGGTGCCGCAGCAGCATGAGGTGGCGGCGAAGCAGGCGGCGGCGGCGGCGGCGGCGAAGGGGAAGTCCGTCGAATCCAAGGGGGTCCGCGTCGTCGGCGGCCGGATCTATGATCCGGAGAACGGCAAGACCTGCCACCAGTGCCGTCAGAAGACGATGGACTTCGCCGCGTCATGCCACAAGATCAAGAAGAACAACAAGCAGTGCACGATCCAGTACTGCCGCAAGTGTCTCTTTAACAGGTACGGCCAGGAAGCCGAGAAGGTGGCCAATGACGGCACCTGGACTTGCCCCAAGTGCAAGGATATCTGCAATTGCAGCTTCTGCATGAAGAAGAAGGGGCTGCCGCCCACCGGAATACTTGCCCATGCTGCTAAGGCTTCAGGTTGTGCTTCGGTCCATCATTTACTGAAAAAGGGGAAAGAAGCGGTGGCTGCCGCGCAGAGGAGCACCCAGAAAGTGAGATCTACACCTGTGAAGAAGAGCCCAAAGAGGGCCATACAGCCAGATGCTGCTGCTGATGAACCTTTGGCTGAAGGGGATGAGAATGTATGCATTGATTTCAATGCTGCTCCAGTGAAGAAGCAGAAGAGAAGCAGGAAGGTGGGTAATGGTGTGGCTCTGACGAAGGATGAAAGCCCTGATGCTCCCAAGGAACAAGTTGTTCTGCCCAAGGGCACTCCAGTCACTAGTGTTGCCGGTGCAGAGTGGGAGCCTGAAGATGTTGGTCTTGCACTTCAGTTCTTCGAATTCTGCCGCACATTTGCTGAGGTAGTTACGAAAGAAAGATCAAGGATATTTAATAGTATGATTGCACATGCCTTGTCAGAGTAATATCTTACTAGCATTTGCAAGAGAATAATAGATCGAGTTTTTTTTTTTCTATTTACATGTCTGATGCATGTTATGTTTTGGTATGAAGTATGACAATGTAAAAAATGCTTTTACTGGTAAGCACCGAAGTGTTGATATTAGAGCTTCCTACAA] [+] EMBL AU029799 [CNGNGACGCGTGGGTGGATCGAAGCGGGGAGAGAGGACTTGAGGAGANGCGTCGTGGAGGGAAGTTTTTGAAAAAAATTTTCCCCAACCCGCTGGGCGCGATGCCGTCATGATCCCCCCCCTCGCCTCGCTGCCCAAAAATTTTTCAATCTCTCTCGCCCACATTAATCACCTTCCTCACGAGGCCAACGAGCAGAAATCCCATTTCATCATCATTCATACCAATCCTCTCGGTTTCTTCCGCGTCCCCGGATTCAGTTTCCTCCTNCTCTCCCCCCCT ] [+] EMBL AK063728 [ CGCCCACATTAATCACCTTCCTCACGAGGCCAACGAGCAGAAATCCCATTTCATCATCATTCATACCAATCCTCTCGGTTTCTTCCGCGTCCCCGGATTCAGTTTCCTCCTCCTCTCCCCCCCTCTCGATCCCTCCTCCTCTTCCCCTCGTTCCAGCGCGCTCGCCGTCGCCCGCCGCCGTCCGCCGACCATGGAAGCAGCTGGAGTGGAGGTGAACGGAGGAGGAGGAGGCGACGTCGTGGTGGTGGTGCCGCAGCAGCATGAGGTGGCGGCGAAGCAGGCGGCGGCGGCGGCGGCGGCGAAGGGGAAGTCCGTCGAATCCAAGGGGGTCCGCGTCGTCGGCGGCCGGATCTATGATCCGGAGAACGGCAAGACCTGCCACCAGTGCCGTCAGAAGACGATGGACTTCGCCGCGTCATGCCACAAGATCAAGAAGAACAACAAGCAGTGCACGATCCAGTACTGCCGCAAGTGTCTCTTTAACAGGTACGGCCAGGAAGCCGAGAAGGTGGCCAATGACGGCACCTGGACTTGCCCCAAGTGCAAGGATATCTGCAATTGCAGCTTCTGCATGAAGAAGAAGGGGCTGCCGCCCACCGGAATACTTGCCCATGCTGCTAAGGCTTCAGGTTGTGCTTCGGTCCATCATTTACTGAAAAAGGGGAAAGAAGCGGTGGCTGCCGCGCAGAGGAGCACCCAGAAAGTGAGATCTACACCTGTGAAGAAGAGCCCAAAGAGGGCCATACAGCCAGATGCTGCTGCTGATGAACCTTTGGCTGAAGGGGATGAGAATGTATGCATTGATTTCAATGCTGCTCCAGTGAAGAAGCAGAAGAGAAGCAGGAAGGTGGGTAATGGTGTGGCTCTGACGAAGGATGAAAGCCCTGATGCTCCCAAGGAACAAGTTGTTCTGCCCAAGGGCACTCCAGTCACTAGTGTTGCCGGTGCAGAGTGGGAGCCTGAAGATGTTGGTCTTGCACTTCAGTTCTTCGAATTCTGCCGCACATTTGCTGAGGTAGTTACGAAAGAAAGATCAAGGATATTTAATAGTATGATTGCACATGCCTTGTCAGAGTAATATCTTACTAGCATTTGCAAGAGAATAATAGATCGAGTTTTTTTTTTTCTATTTACATGTCTGATGCATGTTATGTTTTGGTATGAAGTATGACAATGTAAAAAATGCTTTTACTGGTAAGCACCGAAGTGTTGATATTAGAGCTTCCTACAA] consensusID : consensus_13611#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [TGGAAGCTGGATGACTATTGTAATCACCCAACAATGATGCTCCCAAGGTTTGTTGGAAAGCCGTTATTTCAACATCCTTCCAATAATTTCAGTTCTGCATTATAAAATTGGAGACGATTAACATCTGTCTGTATCAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGATGAAAAGNAAATAGTTGAAAACTATTTATCCACAAGGCCTAAACGCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGTGGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAAAAAAAAAAAAAAAAAA] [+] EMBL AU094852 [TGGAAGCTGGATGACTATTGTAATCACCCAACAATGATGCTCCCAAGGTTTGTTGGAAAGCCGTTATTTCAACATCCTTCCAATAATTTCAGTTCTGCATTATAAAATTGGAGACGATTAACATCTGTCTGTATCAGAGGTTGATGCTGATGATTTAATGGGGAACAAAGACAAGTGGTTTATGCTTAATGAAGATGAAAAGNAAATAGTTGAAAACTATTTATCCACAAGGCCTAAACGCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTTCCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGGCCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGTTGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTATGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCCCGTTACCGTGGTGTGGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13611#0 GGCCGCGCGGCGCCGCGCATTGCTTCACCTCCGCTCCGCGCGGCTGAAACCGAAAAAAAC 60 consensus_13611#1 ----------------------------------------------------CNGNGACG 8 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CCAATTTGGATCGAAGCGGGGAGAGAGGACTTGAGGAGACGCGTCGTGGAGGGAAGTTTT 120 consensus_13611#1 CGTGGGTGGATCGAAGCGGGGAGAGAGGACTTGAGGAGANGCGTCGTGGAGGGAAGTTTT 68 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 TGAAAAAAATTTTCCCCAACCCGCTGGGCGCGATGCCGTCATGATCCCCCCCCTCGCCTC 180 consensus_13611#1 TGAAAAAAATTTTCCCCAACCCGCTGGGCGCGATGCCGTCATGATCCCCCCCCTCGCCTC 128 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 GCTGCCCAAAAATTTTTCAATCTCTCTCGCCCACATTAATCACCTTCCTCACGAGGCCAA 240 consensus_13611#1 GCTGCCCAAAAATTTTTCAATCTCTCTCGCCCACATTAATCACCTTCCTCACGAGGCCAA 188 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CGAGCAGAAATCCCATTTCATCATCATTCATACCAATCCTCTCGGTTTCTTCCGCGTCCC 300 consensus_13611#1 CGAGCAGAAATCCCATTTCATCATCATTCATACCAATCCTCTCGGTTTCTTCCGCGTCCC 248 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CGGATTCAGTTTCCTCCTCCTCTCCCCCCCTCTCGATCCCTCCTCCTCTTCCCCTCGTTC 360 consensus_13611#1 CGGATTCAGTTTCCTCCTNCTCTCCCCCCCTCTCGATCCCTCCTCCTCTTCCCCTCGTTC 308 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CAGCGCGCTCGCCGTCGCCCGCCGCCGTCCGCCGACCATGGAAGCAGCTGGAGTGGAGGT 420 consensus_13611#1 CAGCGCGCTCGCCGTCGCCCGCCGCCGTCCGCCGACCATGGAAGCAGCTGGAGTGGAGGT 368 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 GAACGGAGGAGGAGGAGGCGACGTCGTGGTGGTGGTGCCGCAGCAGCATGAGGTGGCGGC 480 consensus_13611#1 GAACGGAGGAGGAGGAGGCGACGTCGTGGTGGTGGTGCCGCAGCAGCATGAGGTGGCGGC 428 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 GAAGCAGGCGGCGGCGGCGGCGGCGGCGAAGGGGAAGTCCGTCGAATCCAAGGGGGTCCG 540 consensus_13611#1 GAAGCAGGCGGCGGCGGCGGCGGCGGCGAAGGGGAAGTCCGTCGAATCCAAGGGGGTCCG 488 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CGTCGTCGGCGGCCGGATCTATGATCCGGAGAACGGCAAGACCTGCCACCAGTGCCGTCA 600 consensus_13611#1 CGTCGTCGGCGGCCGGATCTATGATCCGGAGAACGGCAAGACCTGCCACCAGTGCCGTCA 548 consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 GAAGACGATGGACTTCGCCGCGTCATGCCACAAGATCAAGAAGAACAACAAGCAGTGCAC 660 consensus_13611#1 GAAGACGATGGACTTCGCCGCGTCATGCCACAAGATCAAGAAGAACAACAAGCAGTGCAC 608 consensus_13611#2 -------------------------------------------------------TGGAA 5 ** * consensus_13611#0 GATCCAGTACTGCCGCAAGTGTCTCTTTAACAGGTACGGCCAGGAAGCCGAGAAGGTGGC 720 consensus_13611#1 GATCCAGTACTGCCGCAAGTGTCTCTTTAACAGGTACGGCCAGGAAGCCGAGAAGGTGGC 668 consensus_13611#2 GCTGGATGACTATTGTAATCACCC----AACAATGATGCTCCCAAGGTTT----GTTGG- 56 * * * *** * ** * **** * * * * * * *** consensus_13611#0 CAATGACGGCACCTGGACTTGCCCCAAGTGCAAGGATATCTGCAATTGCAGCTTCTGCAT 780 consensus_13611#1 CAATGACGGCACCTGGACTTGCCCCAAGTGCAAGGATATCTGCAATTGCAGCTTCTGCAT 728 consensus_13611#2 -AAAGCCGTTATTTCAACATCCTTCCAATAATTTCAGTTCTGCATTATAAAATTGGAGAC 115 ** * ** * * ** * * * * * * ****** * * ** * consensus_13611#0 GAAGAAGAAGGGGCTGCCGCCCACCGGAATACTTGCCCATGCTGCTAAGGCTTCAGGTTG 840 consensus_13611#1 GAAGAAGAAGGGGCTGCCGCCCACCGGAATACTTGCCCATGCTGCTAAGGCTTCAGGTTG 788 consensus_13611#2 GATTAACATCTGTCTGTATCAGAGGTTGATGCT-GATGAT-TTAATGGGGAACAAAGACA 173 ** ** * * *** * * ** ** * ** * * ** * * consensus_13611#0 TGCTTCGGTCCATCATTTACTGAAAAAGGGGAAAGAAGCGGTGGCTGCCGCGCAGAGGAG 900 consensus_13611#1 TGCTTCGGTCCATCATTTACTGAAAAAGGGGAAAGAAGCGGTGGCTGCCGCGCAGAGGAG 848 consensus_13611#2 AGT---GGTTTAT-GCTTAATGAAGATGAAAAGNAAATAGTTGAAAACTATTTA------ 223 * *** ** *** **** * * * ** * ** * * consensus_13611#0 CACCCAGAAAGTGAGATCTACACCTGTGAAGAAGAGCCCAAAGAGGGCCATACAGCCAGA 960 consensus_13611#1 CACCCAGAAAGTGAGATCTACACCTGTGAAGAAGAGCCCAAAGAGGGCCATACAGCCAGA 908 consensus_13611#2 --TCCACAAGGCCTAA---ACGCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATA 278 *** ** * * ** * * * **** *** * * * * ** * consensus_13611#0 TGCTGCTGCTGATGAACCTTTGGCTGAAGGGGATGAGAATGTATGCATTGATTTCAATGC 1020 consensus_13611#1 TGCTGCTGCTGATGAACCTTTGGCTGAAGGGGATGAGAATGTATGCATTGATTTCAATGC 968 consensus_13611#2 CTCTCTAGGTTCCTCACCT--GGCTGAAGGTGGGTGGACTATGCTAGTTGAGAT-AAGGC 335 ** * * **** ********* * ** * * **** * ** ** consensus_13611#0 TGCTCCAGTGAAGAAGCAGAAGAGAAGCAGGAAGGTGGGTAATGGTGTGGCTCTGACGAA 1080 consensus_13611#1 TGCTCCAGTGAAGAAGCAGAAGAGAAGCAGGAAGGTGGGTAATGGTGTGGCTCTGACGAA 1028 consensus_13611#2 AACCTCTGTTGAG-------------GCCAGAAG---GGCCATTTTTTGCTACAGAAAAT 379 * * ** ** ** **** ** ** * ** * ** * consensus_13611#0 GGATGAAAGCCCTGATGCTCCCAAGGAACAAGTTGTTCTGCCCAAGGGCACTCCAGTCAC 1140 consensus_13611#1 GGATGAAAGCCCTGATGCTCCCAAGGAACAAGTTGTTCTGCCCAAGGGCACTCCAGTCAC 1088 consensus_13611#2 TTGCGCAATTACAGAAGAACCAAG------AATTGTT--------GGAT----CATTCAC 421 * ** * ** * ** * * ***** ** ** **** consensus_13611#0 TAGTGTTGCCGGTGCAGAGTGGGAGCCTGAAGATGTTG-GTCTTGCACTTCAGTTCTTCG 1199 consensus_13611#1 TAGTGTTGCCGGTGCAGAGTGGGAGCCTGAAGATGTTG-GTCTTGCACTTCAGTTCTTCG 1147 consensus_13611#2 AGAAATTG--------AATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCCGGCA 473 *** * * *** **** * *** *** * * * * consensus_13611#0 AATTCTGCCGCACATTTGCTGAGATTTTCCAAGTACGCAAGGGTCAACCAGAAAGAATCC 1259 consensus_13611#1 AATTCTGCCGCACATTTGCTGAGGT-----AGTTACGAAAG----AAAGATCAAGGATAT 1198 consensus_13611#2 ACTTTTGTAACACCTTTGC-----------AGTTTCCTAGATGATACTGACGGAAAATGT 522 * ** ** *** ***** * * * * * * * ** consensus_13611#0 TTCGGGACATAGCTGGAGGTCGTGGACTTCGAGTGGTGTCCT-----CAGTCATCGCTGA 1314 consensus_13611#1 TTAATAGTATGATTGCACAT-GCCTTGTCAGAGTAATATCTTACTAGCATTTGCAAGAGA 1257 consensus_13611#2 TT--CAGTATGATCGC----------GTTATACTGAAATGTTGC--ACTATAGCAAGAGT 568 ** ** * * * * * * * * * consensus_13611#0 CTTCCACATAACTTTGTTATCCATCATCCAAGAAGGCCGAGGAATCAAGCCTATCACATA 1374 consensus_13611#1 ATAATAGATCGAGTTTTTTTTTTTCTATTTACATGTCTGATGCATGTTATGTTTTG---G 1314 consensus_13611#2 TTGCTATAGTCAGTCAACCCCCGTTACCGTG---GTGTGGTTAAAGTTAAACTGTT---G 622 * * * * * * * * consensus_13611#0 TTCAAGAGATAATGATGCATGGATTGTTGATACTGGAAAATG--CATAAGCGAGTCAATC 1432 consensus_13611#1 TATGAAGTATGACAATGTAAAAAATGCTTTTACTGGTAAGCA--CCGAAGTGTTGATATT 1372 consensus_13611#2 TGTGTAACATGTGACTGTCGATAATGACTATCCATCCATTCAGTTCAAAAAAAAAAAAAA 682 * ** ** * ** * * * ** * consensus_13611#0 TTTGTCCCAGAGGGACTTCCCCTTGACTCCCTAAGTCAGGGGGTATCGGGATATAAAAAT 1492 consensus_13611#1 AGAGCTTCCTACAA---------------------------------------------- 1386 consensus_13611#2 AAAA-------------------------------------------------------- 686 consensus_13611#0 CTGAGCCCTTCTTGTAAGCTCAGTGTTCTGAACTTTTTGTGTGATGAAAGTCTTTCTACT 1552 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 GAGAAGTTGAGGAGCTGCATATTATCTGAAACAAAAAACCCCTCCAGAGAAAAAGCTCAT 1612 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 TCTGCAAAAGAGAAGGAGGAGCCAAAAGAAGAAACTATAAAGAACACAGATGAAGCAGTG 1672 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CTTTTGAAAACTGAAGGAGCAGCTGTTGCTATTGAGGAAGATAAGAATGGCATTTCTCAA 1732 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CAAAAGGATGTGAAAGAAGTAAAGAATGCAGACACAAATGAAAAGAAGCATGGAGGTTTC 1792 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CTTAGGACTAATCCTTTCATGGTAGACAAAAAGGTAATCTATTGGAAGCTGGATGACTAT 1852 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 TGTAATAACACAACAATGATGCTCCAAGAGGTTGATGCTGATGATTTAATGGGGAACAAA 1912 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 GACAAGTGGTTTATGCTTAATGAAGATGAAAAGAAAATAGTTGAAAACTATTTATCCACA 1972 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 AGGCCTAAACGCAGGGGGAGAAAAGCTGCACAATAGTCTACTGATCATACTCTCTAGGTT 2032 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CCTCACCTGGCTGAAGGTGGGTGGACTATGCTAGTTGAGATAAGGCAACCTCTGTTGAGG 2092 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CCAGAAGGGCCATTTTTTGCTACAGAAAATTTGCGCAATTACAGAAGAACCAAGAATTGT 2152 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 TGGATCATTCACAGAAATTGAATCAGAAGCTTGAACAAGTTTTGTCCAGATGGCAAAGCC 2212 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 GGCAACTTTTGTAACACCTTTGCAGTTTCCTAGATGATACTGACGGAAAATGTTTCAGTA 2272 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 TGATCGCGTTATACTGAAATGTTGCACTATAGCAAGAGTTTGCTATAGTCAGTCAACCCC 2332 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CGTTACCGTGGTGTGGTTAAAGTTAAACTGTTGTGTGTAACATGTGACTGTCGATAATGA 2392 consensus_13611#1 ------------------------------------------------------------ consensus_13611#2 ------------------------------------------------------------ consensus_13611#0 CTATCCATCCATTCAGTTCAGTGCAAAAAAAAAAAAAAAAAAAAAA 2438 consensus_13611#1 ---------------------------------------------- consensus_13611#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||