These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 960 fasta sequence [AAGTGACCAAGCAAACACACAAAGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC-GGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATGCGGCCCTGGCGGCGGCCGCGGCGGCGCCGGCGGCGCGGGCCCCGTGCGCGACTGCCTGGAGAACATGGCGGACAGCGTGGGGCACCTCCGCGACGCGGCGCAGGAGCTCGGCGGCAACATGGGGCGCGCCGGCTCGCCGGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGAGAACACCTGCCTCGACGGCCTCTCCCGCGGCGTCGACGCCGCCACCCGCTCCGCCATCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCG-TGTTTTGCTTGCTAGGTACAAAAAAAAAAAAAAAAAAAACAGAGGCTCTCAAGGCCAAGGTTG] [+] EMBL AK069642 [AAGTGACCAAGCAAACACACAAAGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC GGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATGCGGCCCTGGCGGCGGCCGCGGCGGCGCCGGCGGCGCGGGCCCCGTGCGCGACTGCCTGGAGAACATGGCGGACAGCGTGGGGCACCTCCGCGACGCGGCGCAGGAGCTCGGCGGCAACATGGGGCGCGCCGGCTCGCCGGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGAGAACACCTGCCTCGACGGCCTCTCCCGCGGCGTCGACGCCGCCACCCGCTCCGCCATCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAA ] [+] EMBL C74318 [ TGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCA CGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGA NCCNCGCGAACTtgg ] [+] EMBL AU163845 [ GTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC GGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATG ] [+] EMBL OS1321833 [ CTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCA NGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC GGTGTGCGTNCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGNCGCCGCGGAG CCGCGC ] [+] EMBL AU029318 [ GGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGAGAACACCTGCCTCGACGGCCTCTCCCGCGGCGTCGACGCCGNCACCCGCTCCGCCATCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACNGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACANCGAAGATGGTGAGGAAATTAATCCGNGGTTTTGCTTGCTAng ] [+] EMBL AU029319 [ CGCCACCCGTTACGCCATCCGCGGTAANATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGCGTCNCCCCCGCCAATTAAACATCTACTCNTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGNTCGAGNTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCG TGTTTTGCTTGNTAGGTACAA ] [+] EMBL CB000743 [ TCGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGACGAGTTCATCTTCGCCATGGGTTAATTAGCTCAGATAATCTCGATGCGACGTCATTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTATACACCGAAGATGGTGAGGAAATTAATCCG T ] [+] EMBL CA999169 [ CGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCG TGTTTTGCTTGCTAGGTAAAAAAAAAAAAAAAAAAAAAACAGAGGCTCTCAAGGCCAAGGTTG] consensusID : consensus_13616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence [CAGAATTCGGCACGAGGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACGGCGGCG-CAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGC-GTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATGCGGACCTGGCGGCGGCCGCGGCGGCGCCGACGGAGAGAGACCCGTGCGCGACTGCCTGGAGAACATGGGGGACAGCGTGGGGTACCTCCGCGCACGCGCGGCAAGAGCTCGGCGGTCACATGGGGCGCGCCGGCTCCCCGGACTTCGAGTGACACCTGCAGCACGGGCAAACCTGCTGCAGCGCCCTCCTCACCGACGAAGAACCCTGGCCTCGACGGGCTCTCCCGGGGGGTGCTAGGCCGGCGCCGGTCCGGCATTCGCGGGGAGATCGGCGCAGCCGTCCAGTTGAGCATGAGAGCGCT] [+] EMBL BU672832 [CAGAATTCGGCACGAGGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACGGCGGCGCCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGC GTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTG ] [+] EMBL CA755639 [ CACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCG CAGCGCCGGCGGGTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGCTGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGCACGTGGGGCACATATGCGGACCTGGCGGCGGCCGCGGCGGCGCCGACGGAGAGAGACCCGTGCGCGACTGCCTGGAGAACATGGGGGACAGCGTGGGGTACCTCCGCGCACGCGCGGCAAGAGCTCGGCGGTCACATGGGGCGCGCCGGCTCCCCGGACTTCGAGTGACACCTGCAGCACGGGCAAACCTGCTGCAGCGCCCTCCTCACCGACGAAGAACCCTGGCCTCGACGGGCTCTCCCGGGGGGTGCTAGGCCGGCGCCGGTCCGGCATTCGCGGGGAGATCGGCGCAGCCGTCCAGTTGAGCATGAGAGCGCT] [-] EMBL CB967310 [ TAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACGGCGGCG CAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGC GTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGG ] consensusID : consensus_13616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 392 fasta sequence [CCCCGGGNTGACGCCGCAACCCCGTCCGCAACCGCGGTAANATCGTCGAGGTCGCCCAGGTCACCAGC-ACGCCNTCGCCNTCGTAAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCGTGTTTTGCTTGCTAGGTACAATTATCGATTACTGTTTGATTGATTGTTTTGCTGAAAAAA] [-] EMBL C74211 [CCCCGGGNTGACGCCGCAACCCCGTCCGCAACCGCGGTAANATCGTCGAGGTCGCCCAGGTCACCAGC ACGCCNTCGCCNTCGTAAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCGTGTTTTGCTTGCTAGGTACAATTATCGATTACTGTTTGATTGATTGTTTTGCTGA ] [+] EMBL AU033234 [ tCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTNAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCGTGTTTTGCTTGCTAGGTACAATTATCGATTACTGTTTGATTGATTGTTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13616#0 AAGTGACCAAGCAAACACACAAAGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAA 60 consensus_13616#1 -------CAGAATTCGGCACGAGGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAA 53 consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 CTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCG 120 consensus_13616#1 CTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCG 113 consensus_13616#2 -------------------------CCCCGGGNTGACGC----CGCAACCCCGTCCGCAA 31 ** ** ** *** * ** * * *** consensus_13616#0 CCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGT 180 consensus_13616#1 CCGCGGCGACGGCGAACGGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGT 173 consensus_13616#2 CCGCGGTAAN----ATCGTCGAGGTCGCCCAGGTCACCAGC-ACGCCNTCGCCN--TCGT 84 ****** * * * ** * ** * ** * *** ** * ** * **** consensus_13616#0 GCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCG 240 consensus_13616#1 GCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCG 233 consensus_13616#2 AAACCGCGTCGC---CCCCGCCAAT-----TAAACATCTACTCCTCCTATAACTAA-TTA 135 **** *** **** * * * * * * * ** ** * consensus_13616#0 GGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGG 300 consensus_13616#1 GGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGG 293 consensus_13616#2 AGCTTTTGTTCTTG-GAATCTTGGTCGAGTTCATCTTCGTCATGG-GTTAATTAGCTCAG 193 * * * * * * * **** * ** * * ** * *** * consensus_13616#0 ACAAGGCGCGGTCGGCGTCGACG-TACGTGGGGCACATATGCGGCCCTGGCGGCGGCCGC 359 consensus_13616#1 ACAAGGCGCGGTCGGCGTCGACG-TACGTGGGGCACATATGCGGACCTGGCGGCGGCCGC 352 consensus_13616#2 TTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAAT-T 252 ** ** ***** * ** * * ****** * * *** * consensus_13616#0 GGCGGCGCCGGCGGCGCGGGCCCCGTGCGCGACTGCCTGGAGAACATGGCGGACAGCGTG 419 consensus_13616#1 GGCGGCGCCGACGGAGAGAGACCCGTGCGCGACTGCCTGGAGAACATGGGGGACAGCGTG 412 consensus_13616#2 ATCAAGACTTAATTAAAAGAGTCGATGTAATATTGT------AATG-----------GTT 295 * * * ** * ** ** ** consensus_13616#0 GGGCACCTCCGCG-ACGCGGCGCAGGAGCTCGGCGGCAACATGGGGCGCGCCGGCTCGCC 478 consensus_13616#1 GGGTACCTCCGCGCACGCGCGGCAAGAGCTCGGCGGTCACATGGGGCGCGCCGGCTCCCC 472 consensus_13616#2 GAGTCTTTACACCGAAGATGGTGAGGAAATTAAT--CCGTGTTTTGCTTGCTAGGT--AC 351 * * * * * * * * ** * * ** ** * * * consensus_13616#0 GGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGA 538 consensus_13616#1 GGACTTCGAGTGACACCTGCAGCACGGGCAAACCTGCTGCAGCGCCCTCCTCACCGACGA 532 consensus_13616#2 AATTATCGATTACTGTTTG----ATTGATTGTTTTGCTGAAAAAA--------------- 392 ** * * ** * ** ** * consensus_13616#0 -GAACACCTGCCTCGACGGCCTCTCCCGCGGCGT-CGACGCCGCCACCCGCTCCGCCATC 596 consensus_13616#1 AGAACCCTGGCCTCGACGGGCTCTCCCGGGGGGTGCTAGGCCGGCGCC-GGTCCGGCATT 591 consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 CGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGC 656 consensus_13616#1 CGCGGGGAGATCGGCGCAGCCGTCCAGTTGAGCATGAGAGCGCT---------------- 635 consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 GTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGA 716 consensus_13616#1 ------------------------------------------------------------ consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 ATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGT 776 consensus_13616#1 ------------------------------------------------------------ consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 CGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAG 836 consensus_13616#1 ------------------------------------------------------------ consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 AGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCC 896 consensus_13616#1 ------------------------------------------------------------ consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 GTGTTTTGCTTGCTAGGTACAAAAAAAAAAAAAAAAAAAACAGAGGCTCTCAAGGCCAAG 956 consensus_13616#1 ------------------------------------------------------------ consensus_13616#2 ------------------------------------------------------------ consensus_13616#0 GTTG 960 consensus_13616#1 ---- consensus_13616#2 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||