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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 960 fasta sequence
[AAGTGACCAAGCAAACACACAAAGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC-GGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATGCGGCCCTGGCGGCGGCCGCGGCGGCGCCGGCGGCGCGGGCCCCGTGCGCGACTGCCTGGAGAACATGGCGGACAGCGTGGGGCACCTCCGCGACGCGGCGCAGGAGCTCGGCGGCAACATGGGGCGCGCCGGCTCGCCGGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGAGAACACCTGCCTCGACGGCCTCTCCCGCGGCGTCGACGCCGCCACCCGCTCCGCCATCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCG-TGTTTTGCTTGCTAGGTACAAAAAAAAAAAAAAAAAAAACAGAGGCTCTCAAGGCCAAGGTTG]
[+] EMBL AK069642 [AAGTGACCAAGCAAACACACAAAGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC GGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATGCGGCCCTGGCGGCGGCCGCGGCGGCGCCGGCGGCGCGGGCCCCGTGCGCGACTGCCTGGAGAACATGGCGGACAGCGTGGGGCACCTCCGCGACGCGGCGCAGGAGCTCGGCGGCAACATGGGGCGCGCCGGCTCGCCGGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGAGAACACCTGCCTCGACGGCCTCTCCCGCGGCGTCGACGCCGCCACCCGCTCCGCCATCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAA ]
[+] EMBL C74318 [ TGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCA CGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGA NCCNCGCGAACTtgg ]
[+] EMBL AU163845 [ GTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC GGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATG ]
[+] EMBL OS1321833 [ CTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCGCA NGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGC GGTGTGCGTNCAGAGCCTGGCGTCGTACGGCGGGGCCGGGGCGCCGNCGCCGCGGAG CCGCGC ]
[+] EMBL AU029318 [ GGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGAGAACACCTGCCTCGACGGCCTCTCCCGCGGCGTCGACGCCGNCACCCGCTCCGCCATCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACNGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACANCGAAGATGGTGAGGAAATTAATCCGNGGTTTTGCTTGCTAng ]
[+] EMBL AU029319 [ CGCCACCCGTTACGCCATCCGCGGTAANATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGCGTCNCCCCCGCCAATTAAACATCTACTCNTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGNTCGAGNTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCG TGTTTTGCTTGNTAGGTACAA ]
[+] EMBL CB000743 [ TCGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGACGAGTTCATCTTCGCCATGGGTTAATTAGCTCAGATAATCTCGATGCGACGTCATTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTATACACCGAAGATGGTGAGGAAATTAATCCG T ]
[+] EMBL CA999169 [ CGCCCTCGTCAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCG TGTTTTGCTTGCTAGGTAAAAAAAAAAAAAAAAAAAAAACAGAGGCTCTCAAGGCCAAGGTTG]
consensusID : consensus_13616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence
[CAGAATTCGGCACGAGGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACGGCGGCG-CAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGC-GTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGGCACATATGCGGACCTGGCGGCGGCCGCGGCGGCGCCGACGGAGAGAGACCCGTGCGCGACTGCCTGGAGAACATGGGGGACAGCGTGGGGTACCTCCGCGCACGCGCGGCAAGAGCTCGGCGGTCACATGGGGCGCGCCGGCTCCCCGGACTTCGAGTGACACCTGCAGCACGGGCAAACCTGCTGCAGCGCCCTCCTCACCGACGAAGAACCCTGGCCTCGACGGGCTCTCCCGGGGGGTGCTAGGCCGGCGCCGGTCCGGCATTCGCGGGGAGATCGGCGCAGCCGTCCAGTTGAGCATGAGAGCGCT]
[+] EMBL BU672832 [CAGAATTCGGCACGAGGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACGGCGGCGCCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGC GTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTG ]
[+] EMBL CA755639 [ CACTGTGTAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACAGCGGCG CAGCGCCGGCGGGTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGCTGTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGCACGTGGGGCACATATGCGGACCTGGCGGCGGCCGCGGCGGCGCCGACGGAGAGAGACCCGTGCGCGACTGCCTGGAGAACATGGGGGACAGCGTGGGGTACCTCCGCGCACGCGCGGCAAGAGCTCGGCGGTCACATGGGGCGCGCCGGCTCCCCGGACTTCGAGTGACACCTGCAGCACGGGCAAACCTGCTGCAGCGCCCTCCTCACCGACGAAGAACCCTGGCCTCGACGGGCTCTCCCGGGGGGTGCTAGGCCGGCGCCGGTCCGGCATTCGCGGGGAGATCGGCGCAGCCGTCCAGTTGAGCATGAGAGCGCT]
[-] EMBL CB967310 [ TAGCTCACTGCTCACTCATCAACCAACTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCGCCGCGGCGACGGCGAACGGCGGCG CAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGTGCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGC GTCGTACGGCGGGGCCGGGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGGACAAGGCGCGGTCGGCGTCGACGTACGTGGGG ]
consensusID : consensus_13616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 392 fasta sequence
[CCCCGGGNTGACGCCGCAACCCCGTCCGCAACCGCGGTAANATCGTCGAGGTCGCCCAGGTCACCAGC-ACGCCNTCGCCNTCGTAAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCGTGTTTTGCTTGCTAGGTACAATTATCGATTACTGTTTGATTGATTGTTTTGCTGAAAAAA]
[-] EMBL C74211 [CCCCGGGNTGACGCCGCAACCCCGTCCGCAACCGCGGTAANATCGTCGAGGTCGCCCAGGTCACCAGC ACGCCNTCGCCNTCGTAAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCGTGTTTTGCTTGCTAGGTACAATTATCGATTACTGTTTGATTGATTGTTTTGCTGA ]
[+] EMBL AU033234 [ tCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTNAACCGCGTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCGTGTTTTGCTTGCTAGGTACAATTATCGATTACTGTTTGATTGATTGTTTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13616#0 AAGTGACCAAGCAAACACACAAAGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAA 60
consensus_13616#1 -------CAGAATTCGGCACGAGGCGCCACTGTGTAGCTCACTGCTCACTCATCAACCAA 53
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 CTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCG 120
consensus_13616#1 CTTCCTCAATAATGTCTCGCTCCAGCCTCGCCATGGCGCTCCTCCTCGCCGCCTTCGCCG 113
consensus_13616#2 -------------------------CCCCGGGNTGACGC----CGCAACCCCGTCCGCAA 31
** ** ** *** * ** * * ***
consensus_13616#0 CCGCGGCGACGGCGAACAGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGT 180
consensus_13616#1 CCGCGGCGACGGCGAACGGCGGCGCAGCGCCGGCGGCTAGCGACTTCATCCGCAAGTCGT 173
consensus_13616#2 CCGCGGTAAN----ATCGTCGAGGTCGCCCAGGTCACCAGC-ACGCCNTCGCCN--TCGT 84
****** * * * ** * ** * ** * *** ** * ** * ****
consensus_13616#0 GCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCG 240
consensus_13616#1 GCCGCGCGACGCAGTACCCGGCGGTGTGCGTGCAGAGCCTGGCGTCGTACGGCGGGGCCG 233
consensus_13616#2 AAACCGCGTCGC---CCCCGCCAAT-----TAAACATCTACTCCTCCTATAACTAA-TTA 135
**** *** **** * * * * * * * ** ** *
consensus_13616#0 GGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGG 300
consensus_13616#1 GGGCGCCGCCGCCGCGGAGCCCGCGCGAGCTGGCGCGCGCCGCGCTGTCGGTGAGCGTGG 293
consensus_13616#2 AGCTTTTGTTCTTG-GAATCTTGGTCGAGTTCATCTTCGTCATGG-GTTAATTAGCTCAG 193
* * * * * * * **** * ** * * ** * *** *
consensus_13616#0 ACAAGGCGCGGTCGGCGTCGACG-TACGTGGGGCACATATGCGGCCCTGGCGGCGGCCGC 359
consensus_13616#1 ACAAGGCGCGGTCGGCGTCGACG-TACGTGGGGCACATATGCGGACCTGGCGGCGGCCGC 352
consensus_13616#2 TTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAAT-T 252
** ** ***** * ** * * ****** * * *** *
consensus_13616#0 GGCGGCGCCGGCGGCGCGGGCCCCGTGCGCGACTGCCTGGAGAACATGGCGGACAGCGTG 419
consensus_13616#1 GGCGGCGCCGACGGAGAGAGACCCGTGCGCGACTGCCTGGAGAACATGGGGGACAGCGTG 412
consensus_13616#2 ATCAAGACTTAATTAAAAGAGTCGATGTAATATTGT------AATG-----------GTT 295
* * * ** * ** ** **
consensus_13616#0 GGGCACCTCCGCG-ACGCGGCGCAGGAGCTCGGCGGCAACATGGGGCGCGCCGGCTCGCC 478
consensus_13616#1 GGGTACCTCCGCGCACGCGCGGCAAGAGCTCGGCGGTCACATGGGGCGCGCCGGCTCCCC 472
consensus_13616#2 GAGTCTTTACACCGAAGATGGTGAGGAAATTAAT--CCGTGTTTTGCTTGCTAGGT--AC 351
* * * * * * * * ** * * ** ** * * *
consensus_13616#0 GGGGTTCAAGTGGCACCTGAGCAACGTCCAGACCTGGTGCAGCGCCGCCCTCACCGACGA 538
consensus_13616#1 GGACTTCGAGTGACACCTGCAGCACGGGCAAACCTGCTGCAGCGCCCTCCTCACCGACGA 532
consensus_13616#2 AATTATCGATTACTGTTTG----ATTGATTGTTTTGCTGAAAAAA--------------- 392
** * * ** * ** ** *
consensus_13616#0 -GAACACCTGCCTCGACGGCCTCTCCCGCGGCGT-CGACGCCGCCACCCGCTCCGCCATC 596
consensus_13616#1 AGAACCCTGGCCTCGACGGGCTCTCCCGGGGGGTGCTAGGCCGGCGCC-GGTCCGGCATT 591
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 CGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGC 656
consensus_13616#1 CGCGGGGAGATCGGCGCAGCCGTCCAGTTGAGCATGAGAGCGCT---------------- 635
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 GTCGCCCCCGCCAATTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGA 716
consensus_13616#1 ------------------------------------------------------------
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 ATCTTGGTCGAGTTCATCTTCGTCATGGGTTAATTAGCTCAGTTAATCTCGATGCGTCGT 776
consensus_13616#1 ------------------------------------------------------------
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 CGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAATTAAAAG 836
consensus_13616#1 ------------------------------------------------------------
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 AGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCC 896
consensus_13616#1 ------------------------------------------------------------
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 GTGTTTTGCTTGCTAGGTACAAAAAAAAAAAAAAAAAAAACAGAGGCTCTCAAGGCCAAG 956
consensus_13616#1 ------------------------------------------------------------
consensus_13616#2 ------------------------------------------------------------
consensus_13616#0 GTTG 960
consensus_13616#1 ----
consensus_13616#2 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||