These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1369 fasta sequence [ACCTCTGTCCGCTCTCGTCGTGAAAGAAAGCGTGTCACCTATACTTTTGATGATTATGAGCGTTCAATAAATGAAGCCATAAAACCAACAAAGAAAAGTGAGAACTCTTCTGAGTTCATTACTACTTCTAACAGAAGAGTACACCCAAAACGAGAGACAGCGACCAATGGTAGGTTAGCTGGTCCTTCGCCATTATGCAATGGATTCTATGGAGAATATCCACTAAGGTCACATGGCTACCAAGGAAGTGAGTGGGAGAAAAAACCTGAGACTCTCGATCGCAGGCAAAGAAAAAGATCTCGAAGGTACACGCAAGATTTTGTTGAGGCTATCTCGGACGTCGACCCAAACTTCGACAGTGATGATGATATCATTGGTGAAGCAGTCTATGATGAGGAATATCTTAGAAGTCGAAAGCAATATAAGGCCAGACTTTTAGAACTCGATAAAGAGTTCCAATTGGAACAAGTTGCCGATGATGGTAATGATGAAGTGGAATATCCTTCGAGTACCAGTGAAGATGAAAAGGAGCCCCAACGGTACAAAAGATTGGCTACTTGCAATCCTCGAGGGACCAACTTGAGAACTATCGATGGATTCCAAACATGCATCACACGAAGTAAGCGTTCCACCCGCCCACACATGAAGTATCATCAGTATGATCTTTCTGGCACAGATACAGAATTGGGAAAGCCAGGTAAAATAAAGGTACCAGATCCAGATGCTGGTTCTGATGCACTAAATGACATGGAGCTCTCGACAACTAGTCAAGACCAGGA-GGAAGAA-GGTGCTGAAGTAAATAAAGAGCGGCCACCCCTGCTTTCTCCTAGCAGGAATAATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGAGGTTGCGCCTGTAGGCGGTTTTG-ATGAAACACAGAGTCGCAACGGCGAAAGGCGACCAC-CTGGATAACAACTGAGGATCATGCCCTTGGGTTTAGATACTGAGTAACATTGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG-CGTCAACCTG-ATTGGAGG-TGCTTTTGTCAACTTGGAAGAACCA-AGTGA-AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACCATTAGCTGATCCA-GTCTGATGATTGTAGACCATGGTGAGATGTGTGCA-CTGATGTCTGGCACGCGTCAACTGATAGCGTATTAGCGTATGCGTGTTAGATTGCCATTTTTCTTCTTCTTTTTGAGTCATTGTCACATTGTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAACATTGTTGGTGTGGCTTGGCCGCTTCAGGATGCAAAAAAAAAAAA] [+] EMBL CF327297 [ACCTCTGTCCGCTCTCGTCGTGAAAGAAAGCGTGTCACCTATACTTTTGATGATTATGAGCGTTCAATAAATGAAGCCATAAAACCAACAAAGAAAAGTGAGAACTCTTCTGAGTTCATTACTACTTCTAACAGAAGAGTACACCCAAAACGAGAGACAGCGACCAATGGTAGGTTAGCTGGTCCTTCGCCATTATGCAATGGATTCTATGGAGAATATCCACTAAGGTCACATGGCTACCAAGGAATTGAGTGGGAGAAAAAACCTGAGACTCTCGATCGCAGGCAAAGAAAAAGATCTCGAAGGTACACGCAAGATTTTGTTGAGGCTATCTCGGACGTCGACCCAAACTTCGACAGTGATGATGATATCATTGGTGAAGCAGTCTATGATGAGGAATATCTTAGAAGTCGAAAGCAATATAAGGCCAGACTTTTAGAACTCGATAAAGAGTTCCAATTGGAACAAGTTGCCGATGATGGTAAGAATGAAGTGGAATATCCTTCGAGTACCAGTGAAGATGAAAAGGAGCCCCAACGGTACAAAAGATCGGCTACTTGCAATCCTCGAGGGACCAACTTGAGAACTATCGATGGATTCCAAACATGCATCACACGAAGTAAGCGTTCCACCCGCCCACACATGAAGTATCATCAGTATGATCTTTC ] [+] EMBL AK059670 [ CCATAAAACCAACAAAGAAAAGTGAGAACTCTTCTGAGTTCATTACTACTTCTAACAGAAGAGTACACCCAAAACGAGAGACAGCGACCAATGGTAGGTTAGCTGGTCCTTCGCCATTATGCAATGGATTCTATGGAGAATATCCACTAAGGTCACATGGCTACCAAGGAAGTGAGTGGGAGAAAAAACCTGAGACTCTCGATCGCAGGCAAAGAAAAAGATCTCGAAGGTACACGCAAGATTTTGTTGAGGCTATCTCGGACGTCGACCCAAACTTCGACAGTGATGATGATATCATTGGTGAAGCAGTCTATGATGAGGAATATCTTAGAAGTCGAAAGCAATATAAGGCCAGACTTTTAGAACTCGATAAAGAGTTCCAATTGGAACAAGTTGCCGATGATGGTAATGATGAAGTGGAATATCCTTCGAGTACCAGTGAAGATGAAAAGGAGCCCCAACGGTACAAAAGATTGGCTACTTGCAATCCTCGAGGGACCAACTTGAGAACTATCGATGGATTCCAAACATGCATCACACGAAGTAAGCGTTCCACCCGCCCACACATGAAGTATCATCAGTATGATCTTTCTGGCACAGATACAGAATTGGGAAAGCCAGGTAAAATAAAGGTACCAGATCCAGATGCTGGTTCTGATGCACTAAATGACATGGAGCTCTCGACAACTAGTCAAGACCAGGA GGAAGAA GGTGCTGAAGTAAATAAAGAGCGGCCACCCCTGCTTTCTCCTAGCAGGAATAATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGAGGTTGCGCCTGTAGGCGGTTTTG ATGAAACACAGAGTCGCAACGGCGAAAGGCGACCAC CTGGATAACAACTGAGGATCATGCCCTTGGGTTTAGATACTGAGTAACATTGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG CGTCAACCTG ATTGGAGG TGCTTTTGTCAACTTGGAAGAACCA AGTGA AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACCATTAGCTGATCCA GTCTGATGATTGTAGACCATGGTGAGATGTGTGCA CTGATGTCTGGCACGCGTCAACTGATAGCGTATTAGCGTATGCGTGTTAGATTGCCATTTTTCTTCTTCTTTTTGAGTCATTGTCACATTGTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAACATTGTTGGTGTGGCTTGGCCGC ] [+] EMBL CF329793 [ CCACTAAGGTCACATGGCTACCAAGGAAGTGAGTGGGAGAAAAAACCTGAGACTCTCGATCGCAGGCAAAGAAAAAGATCTTGAAGGTACACGCAAGATTTTGTTGAGGCTATCTCGGACGTCGACCCAAACTTCGACAGTGATGATGATATCATTGGTGAAGCAGTCTATGATGAGGAATATCTTAGAAGTCGAAAGCAATATAAGG CAGACTTTTAGAACTCGATAAAGAGTTCCAATTGGAACAAGTTGCCGATGATGGTAATGATGAAGTGGAATATCCTTCGAGTACCAGTGAAGATGAAAAGGAGCCCCAACGGTACAAAAGATTGGCTACTTGCAATCCTCGAGGGACCAACTTGAGAACTATCGATGGATTCCAAACATGCATCACACGAAGTAAGCGTTCTACCCGCCCACACATGAAGTATCATCAGTATGATCTTTCTGGCACAGATACAGAATTGGGAAAGCCAGGTAAAATAAAGGTACCAGATCCAGATGCTGGTTCTGATGCACTAAATGACATGGAGCTCTCGACA ] [+] EMBL CA757624 [ ACCTGAGACTCTCGATCGCAGGCAAAGAAAAAGATCTCGAAGGTACACGCAAGATTTTGTTGAGGCTATCTCGGACGTCGACCCAAACTTCGACAGTGATGATGATATCATTGGTGAAGCAGTCTATGATGAGGAATATCTTAGAAGTCGAAAGCAATATAAGGCCAGACTTTTAGAACTCGATAAAGAGTTCCAATTGGAACAAGTTGCCGATGATGGTAATGATGAAGTGGAATATCCTTCGAGTACCAGTGAAGATGAAAAGGAGCCCCAACGGTACAAAAGATTGGCTACTTGCAATCCTCGAGGGACCAACTTGAGAACTATCGATGGATTCCAAACATGCATCACACGAAGTAAGCGTTCCACCCGCCCACACATGAAGTATCATCAGTATGATCTTTCTGGCACAGATACAGAATTGGGAAAGCCAGGTAAAATAAAGGTACCAGATCCAGATGCTGGTTCTGATGCACTAAATGACATGGAGCTCTCGACGACTAGTCAAGACCAGGA GGAAGAA GGTGCTGAAGTAAATAAAGAGCGGCCACCCCTGCTTTCTCCTAGCAGGAATAATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGAGGTTGCGCCTGTAGGCGGTTTTGAATG AACACAGAGTCGCAACGGCGAAAGGGGACCAC CTGGATAACAACTGAGGATCATGCCCTGGGGTTTAGATACTGAGTAACATNGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAAAGCGATAC ACATTATTCATGCCGT AATCTGAATTGGAGn gc ] [+] EMBL CA765844 [ TATCATTGGTGAAGCAGTCTATGATGAGGAATATCTTAGAAGTCGAAAGCAATATAAGGCCAGACTTTTAGAACTCGATAAAGAGTTCCAATTGGAACAAGTTGCCGATGATGGTAATGATGAAGTGGAATATCCTTCGAGTACCAGTGAAGATGAAAAGGAGCCCCAACGGTACAAAAGATTGGCTACTTGCAATCCTCGAGGGACCAACTTGAGAACTATCGATGGATTCCAAACATGCATCACACGAAGTAAGCGTTCCACCCGCCCACACATGAAGTATCATCAGTATGATCTTTCTGGCACAGATACAGAATTGGGAAAGCCAGGTAAAATAAAGGTACCAGATCCAGATGCTGGTTCTGATGCACTAAATGACATGGAGCTCTCGACGACTAGTCAAGACCAGGA GGAAGAA GGTGCTGAAGTAAATAAAGAGCGGCCACCCCTGCTTTCTCCTAGCAGGAATAATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGAGGTTGCGCCTGTAGGCGGTTTTG ATGAAACACAGAGTCGCAACGGCGAAAGGTGACCAC CTGGATAACAACTGAGGATCATGCCCTTGGGTTTAGATACTGAGTAACATTGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG CGTCAACCTG ATTTGAGG TGCTTTTGTCAACTTGGAAGAACCA AGTGA AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACAATTAGCTGATCCA GTCTGATGATTGTAGACCATGGTGAGATGTGTGCA CTGATGTCTGGCACGCGT ] [+] EMBL CF330545 [ ATTGGTGAAGCAGTCTATGATGAGGAATATCTTAGAAGTCGAAAGCAATATAAGGCCAGACTTTTAGAACTCGATAAAGAGTTCCAATTGGAACAAGTTGCCGATGATGGTAATGATGAAGTGGAATATCCTTCGAGTACCAGTGAAGATGAAAAGGAGCCCCAACGGTACAAAAGATTGGCTACTTGCAATCCTCGAGGGACCAACTTGAGAACTATCGATGGATTCCAAACATGCATCACACGAAGTAAGCGTTCCACCCGCCCACACATGAAGTATCATCAGTATGATCTTTCTGGCACAGATACAGAATTGGGAAAGCCAGGTAAAATAAAGGTACCAGATCCAGATGCTGGTTCTGATGCACTAAATGACATGGAGCTCTCGACAACTAGTCAAGACCAGGAGGGAAGAAGGGTGCTGAAGTAAATAAAGAGCGGCCACCCCTGTTTTCTCCTAGCAGGAATAATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGA ] [-] EMBL CB629750 [ ATCACACGAAGTAAGCGTTCCACCCGCCCACACATGAAGTATCATCAGTATGATCTTTCTGGCACAGATACAGAATTGGGAAAGCCAGGTAAAATAAAGGTACCAGATCCAGATGCTGGTTCTGATGCACTAAATGACATGGAGCTCTCGACGACTAGTCAAGACCAGGA GGAAGAA GGTGCTGAAGTAAATAAAGAGCGGCCACCCCTGCTTTCTCCTAGCAGGAATAATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGAGGTTGCGCCTGTAGGCGGTTTTG ATGAAACACAGAGTCGCAACGGCGAAAGGTGACCAC CTGGATAACAACTGAGGATCATGCCCTTGGGTTTAGATACTGAGTAACATTGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG CGTCAACCTG ATTTGAGG TGCTTTTGTCAACTTGGAAGAACCA AGTGA AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACAATTAGCTGATCCA GTCTGATGATTGTAGACCATGGTGAGATGTGTGCA CTGATGTCTGGCACGCGTCAACTGATAGCGTATTAGCGTATGCGTGTTAGATTGCCATTTTTCTTCTTCTTTTTGAGTCATTGTCACATTGTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAAgg ] [+] EMBL AA749704 [ gcnGGCCACCCCTGCTTTCTCCTAGCATTAATAATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGAGGTTGCGCCTGTAGGCGGTTTTG ATGAAACACAGAGTCGCAACNGCGAAAGGTGACCAC CTGGATAACAACTGAGNATCATGCCCTTNGGTTTAGATACTGAGTAACATTGTTGATCCATCAGAGNCCAATGAGCACCCATGAGAGAGCGATAC ] [-] EMBL CF329792 [ ATGGAAGCGATGGGAGAAGATTTCTTGACTTAAACGAGGTTGCGCCTGTAGGCGGTTTTG ATGAAACACAGAGTCGCAACGGCGAAAGGCGACCAC CTGGATAACAACTGAGGATCATGCCCTTGGGTTTAGATACTGAGTAACATTGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG CGTCAACCTG ATTGGAGG TGCTTTTGTCAACTTGGAAGAACCA AGTGA AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACCATTAGCTGATCCA GTCTGATGATTGTAGACCATGGTGAGATGTGTGCA CTGATGTCTGGCACGCGTCAACTGATAGCGTATTAGCGTATGCGTGTTAGATTGCCATTTTTCTTCTTCTTTTTGAGTCATTGTCACATTGTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAACATTGTTGGTGTGGCTTGGCCGCTTCAGGATGCAAAAAAAA ] [-] EMBL CF330546 [ TGCGCCTGTAGGCGGTTTTG ATGAAACACAGAGTCGCAACGGCGAAAGGCGACCAC CTGGATAACAACTGAGGATCATGCCCTTGGGTTTAGATACTGAGTAACATTGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG CGTCAACCTG ATTGGAGG TGCTTTTGTCAACTTGGAAGAACCA AGTGA AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAGTTACCATTAGCTGATCCA GTCTGATGATTGTAGACCATGGTGAGATGTGTGAA AAAAAGTCTGGCACGCGTCAACTGATAGCGTATTAGCGTATG AAAAAAAATTGCCATTTTTCTTCTTCTTTTTGAGTCATTGTCACATTTTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAACATTGTTGGTGTGGCTTGGCCGCTTCAGGAGGCAAAAAAAAAAAA] [-] EMBL CF327298 [ CGGTTTTG ATGAAACACAGAGTCGCAACGGCGAAAGGCGACCACTCTGGATAACAACTGAGGATCATGCCCTTGGGTTTAGATACTGAGTAACATTGTTGATCCATCAGGGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG CGTCAACCTG ATTGGAGG TGCTTTTGTCAACTTGGAAGAACCA AGTGA AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACCATTGGCTGATCCA GTCTGATGATTGTAGACCATGGTGAGATGTGTGCA CTGATGTCTGGCACGCGTCAACTGATAGCGTATTAGCGTATGCGTGTTAGATTGCCATTTTTCTTCTTCTTTTTGAGTCATTGTCACATTGTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAACATTGTTGGTGTGGCTTGGCCGCTTCAGGATGCAAAA ] [+] EMBL C96817 [ GCCCTTGGNTTTAGATACTGAGTAACATTGTTGATCCATCAGAGGCCAATGAGCACCCATGAGAGAGCGATACAACATCATTCATG CGTCAACCTG ATTGNAGG TGCTTTTGTCAACTTGGAAGAACCA AGTGA AGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACCATTAGCTGANCCA GTCTGATGATTGTAGACCATGGTGAGATGTGTGCA CTGATGTCTGGCACGCGTCAACTGATAGCGTATTAGCGTATGCGTGTTAGATTGCCATTTTTCTTCTTCTTTTTGAGTNATTGTCACATTGTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAACATTGTTGGTGTGGCTTGGCCGCTTCAGGATGCAttctctg ] [+] EMBL BI796429 [ TCATG CGTCAACCTG ATTTGAGGTTGCTTTTGTCAACTTGGAAGAACCACAGTGATAGAAACGATATGGTCCATCATAAGTGCAGCTGTAGAATTACCATTAGCTGATCCACGTCTGATGATTGTAGACCCTGGTGAGATGTGTGCACCTGATGTCTGGCACGCGTCCACTGATAGCGTATTAGCGTATGCGTGTTAGATTGCCATTTTTCTTCTTCTTTTTGAGTCATTGTCACATTGTTGTTTCACCCCGGCTACATATGCTTGCGAAATCGCGAGGCCTAAATGAGTAACCTTGTTGGTGTGGCTTGCCCGCTTCAGGATGCCAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||