cluster # 13625

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Oryza sativa
cluster # 13625 cluster # 13625 Sequences # 13 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13625#0 length = 1274 sequences # 8
consensus_13625#1 length = 827 sequences # 2

consensus_13625#2 length = 602 sequences # 1
consensus_13625#3 length = 413 sequences # 1
consensus_13625#4 length = 304 sequences # 1

consensusID : consensus_13625#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1274
fasta sequence

                              [AATCCACGCGCATTCCACACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC-GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC-TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG-ACCGCAAG-ACCATGGCG-CTCAAGATCG-CCGACCTCGGGCT-CAGCCG-CTCGTTCA-CTGTCCCTCTCAA-GAAGTACACCCA-CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT-GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGGGGGGGGCCGCGGTACC]

[+] EMBL AK059682             [AATCCACGCGCATTCCACACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGGGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTA                                                                        ]
[+] EMBL CA753635             [                 CACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGAACCGCAAGAACCTTGGCGCCTCCAGATCGCCCGACCTCGGGCTCCAGCGGCCTGGTTCACCTGTCCCTCTCAAGGAAGTACACCCAGCGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB659407             [                          ACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSSS22411            [                                                      ACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTTTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTA                                                                        ]
[+] EMBL D43500               [                                                      ACCACCAGGCGGGCGGCGGCG CGGTNACGACGACGACGGACGGGGGCGAGCTNCGGGCGATNGACCTNTACGAGAAGCTNGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAAGCGCGGGAGAAGGCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU032803             [                                                                                                                                                                                                                                                                                                                                                                                      GTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTNTTGGCGCGGCACACTACTTCACTNCGGTTGACATCTGGTCTGTGGGGCTGCATTTTTGCTGAGTTGGNCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB659408             [                                                                                                                                                                                                                                                                                                                                                                                                                       CGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGGGGGGGGCCGCGGTACC]
[-] EMBL CF326824             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTCCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTTTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAA                                                          ]




>consensus_13625#0
AATCCACGCGCATTCCACACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACC
AGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACC
TGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGG
AGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGG
GCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGC
ACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCT
ACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGA
ATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCG
TTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCA
TGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTG
TCCCTCTCAAGAAGTACACCCACGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTC
TTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG
CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGC
ACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTAC
CTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTC
TCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGA
TCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACT
GAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACT
AGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTC
CTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACT
TAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGGGG
GGGGCCGCGGTACC

consensusID : consensus_13625#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 827
fasta sequence

                              [AGGAGACGACGCGCCGCCACCCACCCACTCGACCGTTGCCACCGCTGCTTCCCTTCCCCTTTCCANNGGCCCTNCNGCCNNTGGTCCNNCCCCATTTNAANTNCNCCCCCCCCACACACACCCCCTTCCACCGCCGCCACCGCCGCCGAATCTAGGGTTCATCGGGGATTCGGGATCGATGGAGAAGTACGAGAAGCTGGAGAAGGTNGGGGAAGGGACGTACGGGAAGGTGTACAAGGCGCAGGACAGGGCGACGGGGCAGCTGGTGGCGCTGAAGAAGACGAGGCTGGAGATGGACGAGGAGGGGATCCCGCCCACCGCGCTGCGCGAGATCTCCATCCTCAGGCTGCTCTCCCAGTCGCTCTACGTCGTCCGCCTCCTCTCCGTCGAGCAGGCCACCAAGAACGGCAAGCCCGTCCTCTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCTACCGCAAGGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGAGCTTCTTGTATCAGTTATGCAAAGGAGTCGCACATTGCCATGGCCATGGTGTCCTTCACCGTGATTTAAAGCCACAAAACCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAGGTAGGGCGTTCACTGTTCCTATGAAAAGCTACACACATGAGATTGTGACTCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTGCATCTTCGCTGAAATGGTCAGAAAACAAGCTCTTTTTCCAGGTGACT]

[+] EMBL C22365               [AGGAGACGACGCGCCGCCACCCACCCACTCGACCGTTGCCACCGCTGCTTCCCTTCCCCTTTCCANNGGCCCTNCNGCCNNTGGTCCNNCCCCATTTNAANTNCNCCCCCCCCACACACACCCCCTTCCACCGCCGCCACCGCCGCCGAATCTAGGGTTCATCGGGGATTCGGGATCGATGGAGAAGTACGAGAAGCTGGAGAAGGTNGGGGAAGGGACGTACGGGAAGGTGTACAAGGCGCAGGACAGGGCGACGGGGCAGCTGGTGGCGCTGAAGAAGACGAGGCTGGAGATGGACGAGGAGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BP184590             [                                                                                                                                                                                                                                         ACAAGGCGCAGGACAGGGCGACGGGGCAGCTGGTGGCGCTGAAGAAGACGAGGCTGGAGATGGACGAGGAGGGGATCCCGCCCACCGCGCTGCGCGAGATCTCCATCCTCAGGCTGCTCTCCCAGTCGCTCTACGTCGTCCGCCTCCTCTCCGTCGAGCAGGCCACCAAGAACGGCAAGCCCGTCCTCTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCTACCGCAAGGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGAGCTTCTTGTATCAGTTATGCAAAGGAGTCGCACATTGCCATGGCCATGGTGTCCTTCACCGTGATTTAAAGCCACAAAACCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAGGTAGGGCGTTCACTGTTCCTATGAAAAGCTACACACATGAGATTGTGACTCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTGCATCTTCGCTGAAATGGTCAGAAAACAAGCTCTTTTTCCAGGTGACT]




>consensus_13625#1
AGGAGACGACGCGCCGCCACCCACCCACTCGACCGTTGCCACCGCTGCTTCCCTTCCCCT
TTCCANNGGCCCTNCNGCCNNTGGTCCNNCCCCATTTNAANTNCNCCCCCCCCACACACA
CCCCCTTCCACCGCCGCCACCGCCGCCGAATCTAGGGTTCATCGGGGATTCGGGATCGAT
GGAGAAGTACGAGAAGCTGGAGAAGGTNGGGGAAGGGACGTACGGGAAGGTGTACAAGGC
GCAGGACAGGGCGACGGGGCAGCTGGTGGCGCTGAAGAAGACGAGGCTGGAGATGGACGA
GGAGGGGATCCCGCCCACCGCGCTGCGCGAGATCTCCATCCTCAGGCTGCTCTCCCAGTC
GCTCTACGTCGTCCGCCTCCTCTCCGTCGAGCAGGCCACCAAGAACGGCAAGCCCGTCCT
CTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCTACCGCAA
GGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGAGCTTCTTGTATCAGTTATG
CAAAGGAGTCGCACATTGCCATGGCCATGGTGTCCTTCACCGTGATTTAAAGCCACAAAA
CCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAGGTAGGGC
GTTCACTGTTCCTATGAAAAGCTACACACATGAGATTGTGACTCTTTGGTACAGAGCTCC
TGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTG
CATCTTCGCTGAAATGGTCAGAAAACAAGCTCTTTTTCCAGGTGACT

consensusID : consensus_13625#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CTGAAGGAGTAGAAAACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGATAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTGTCCCTCTC]

[+] EMBL CF326823             [CTGAAGGAGTAGAAAACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGATAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTGTCCCTCTC]




>consensus_13625#2
CTGAAGGAGTAGAAAACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGCGG
CGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACG
ATAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGG
CGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGC
CGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGG
TGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCG
TCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCC
AGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTT
TCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACC
GCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTGTCCCTC
TC

consensusID : consensus_13625#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [GNCNTCGGCACGGGGGCTTCTGCNCATATAGNGAGTTGCTGGGCACCCCAANTGNGCAAGTTTGGCCAGGNGNGAGCAAGCTACCTAACTGGCACGNGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTANTGTGCTTAANAAT]

[+] EMBL AA752741             [GNCNTCGGCACGGGGGCTTCTGCNCATATAGNGAGTTGCTGGGCACCCCAANTGNGCAAGTTTGGCCAGGNGNGAGCAAGCTACCTAACTGGCACGNGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTANTGTGCTTAANAAT]




>consensus_13625#3
GNCNTCGGCACGGGGGCTTCTGCNCATATAGNGAGTTGCTGGGCACCCCAANTGNGCAAG
TTTGGCCAGGNGNGAGCAAGCTACCTAACTGGCACGNGTACCCCCAGTGGAATCCCTCGA
AAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGC
TGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCA
ACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAA
AAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGG
GAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTANTGTGCTTAANAAT

consensusID : consensus_13625#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [CCCCNCCCAGGGAAAAAAAAAACGTTTGTGCCGTCTTCGNGACTAGCCTGCCCCTGAAGCATTGCTTTTGCTCCTAGGGGAAAAAGTACTGTTNGTGTCTGTTTCCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGTTTGGTTTTGTTTGTTGTCGTTAATTCGTCAAGTCNGTCAGCNNGTTNTGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C22633               [CCCCNCCCAGGGAAAAAAAAAACGTTTGTGCCGTCTTCGNGACTAGCCTGCCCCTGAAGCATTGCTTTTGCTCCTAGGGGAAAAAGTACTGTTNGTGTCTGTTTCCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGTTTGGTTTTGTTTGTTGTCGTTAATTCGTCAAGTCNGTCAGCNNGTTNTGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13625#4
CCCCNCCCAGGGAAAAAAAAAACGTTTGTGCCGTCTTCGNGACTAGCCTGCCCCTGAAGC
ATTGCTTTTGCTCCTAGGGGAAAAAGTACTGTTNGTGTCTGTTTCCCTGGATGCTGCTTA
GTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAA
AATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGTTTGGTTTTGTTTGTTG
TCGTTAATTCGTCAAGTCNGTCAGCNNGTTNTGTGNGAAAAAAAAAAAAAAAAAAAAAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      AATCCACGCGCATTCCACACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACC 60
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      AGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACC 120
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      TGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGG 180
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      AGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGG 240
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      GCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGC 300
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      ACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCT 360
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      ACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGA 420
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      ATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCG 480
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      TTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCA 540
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      TGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTG 600
consensus_13625#1      ------------------------------------------------------------
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      TCCCTCTCAAGAAGTACACCCACGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTC 660
consensus_13625#1      -----------------------------------------------------------A 1
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      TTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG 720
consensus_13625#1      GGAGACGACGCGCCGCCACCCACCCACTCGACCGTTGCCACCGCTGCTTCCCTTCCCCTT 61
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      -----------------------------GNCNTCGGCACGGGG--------GCTTCTGC 23
consensus_13625#4      -------------------------CCCCNCCCAGGGAAAAAAAAAAC----GTTTGTGC 31
consensus_13625#0      CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGC 780
consensus_13625#1      TCCANNGGCCCTNCNGCCNNTGGTCCNNCCCCATTTNAANTNCNCCCCCCCCACACACAC 121
consensus_13625#2      ---------CTGAAGGAGTAGAAAACCCAACCAGCGAGAGAGAGATGGCGGCGCTC-CAC 50
                                                                                  *

consensus_13625#3      NCATATAGNGAGTTGCTGGGCACCCCAAN----------TGNGCAAGTTTGGCCAGGNGN 73
consensus_13625#4      CGTCTTCGNGACTAGCCTG---CCCCTGA----------AGCATTGCTTTTGCTCCTAGG 78
consensus_13625#0      ACATTTT-CAAGTTGCTGGGCACCCCAAA----------TGAGCAAGTTTGGCCAGGAGT 829
consensus_13625#1      CCCCTTCCACCGCCGCCACCGCCGCCGAATCTAGGGTTCATCGGGGATTCGGGATCGATG 181
consensus_13625#2      CACCAGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATG 110
                                     *          *                                  

consensus_13625#3      GAGCAAGCTACCTAACTGGCACGNGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCT 133
consensus_13625#4      GGAAAAAGTACT--GTTNGTGTCTGTTTCCC---TGGATGCTGCTTAGTGTGCTTAAGAA 133
consensus_13625#0      GAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCT 889
consensus_13625#1      GAGAAGTACGAGAAGCTGGAGAAGGTNGGGG-AAGGGACGTACGGGAAGGTGTACAAGG- 239
consensus_13625#2      GACCTGTACGATAAGCTGGAGAAGGTCGGGG-AGGGGACGTACGGGAAGGTGTACAAGG- 168
                       *               * *     **         ***        *  ***    *   

consensus_13625#3      TGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCC 193
consensus_13625#4      TTCACTTGTTTGTGATGGTAATGAGT---AATGACTTAAGAA-----TTCGACAAAATCT 185
consensus_13625#0      TGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCC 949
consensus_13625#1      CGCAGGACAGGGCGACGGGGCAGCTG--GTGGCGCTGAAGAAGACGAGGCTGGAGATGGA 297
consensus_13625#2      CGCGGGAGAAGGCGACGGGGCGGATC--GTGGCGCTGAAGAAGACGCGGCTGCCGGAGGA 226
                                    ** *     *           **  ****       *          

consensus_13625#3      GTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAA 253
consensus_13625#4      GTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGTTTGGTTTTGTT-TGTTGTCGT 244
consensus_13625#0      GTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAA 1009
consensus_13625#1      CGAGGAGGGGATCCCGCCCACCGCGCTGCGCGAG-ATCTCCATCCTCAGGCTGCTCTCCC 356
consensus_13625#2      CGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAG-GTGTCGCTGCTGCGGATGCTGTCGC 285
                                  *       *    *           *               *    *  

consensus_13625#3      GGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAAACGTTGTGC 313
consensus_13625#4      TAATTCGTCAAGTCNGTCAGCNNGTTNTGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAA 304
consensus_13625#0      GGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAA-CGTTGTGC 1068
consensus_13625#1      AGTCGCTCTACGTCGTCCGCCTCCTCTCCGTCGAGCAGGCC---ACCAAGAACGGCAAGC 413
consensus_13625#2      AGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGA 345
                                  *     *      *                   *  **           

consensus_13625#3      GTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTT 373
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      GTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTT 1128
consensus_13625#1      CCGTCCTCTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCT 473
consensus_13625#2      CCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCC 405
                                                                                   

consensus_13625#3      TGTGTCTGTTTCCTGGATGCTGCTTANTGTGCTTAANAAT-------------------- 413
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      TGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAA 1188
consensus_13625#1      ACCGCAAGGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGAGCTTCTTGTATC 533
consensus_13625#2      ACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCG------TCAAGATCCTGATGTACC 459
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      TGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCA 1248
consensus_13625#1      AGTTATGCAAAGGAGTCGCACATTGCCATGGCCATGGTGTCCTTCACCGTGATTTAAAGC 593
consensus_13625#2      AGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGC 519
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      GTTTTCTTGGGGGGGGCCGCGGTACC---------------------------------- 1274
consensus_13625#1      CACAAAACCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAG 653
consensus_13625#2      CGCATAACCTGCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCA 579
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      ------------------------------------------------------------
consensus_13625#1      GTAGGGCGTTCACTGTTCCTATGAAAAGCTACACACATGAGATTGTGACTCTTTGGTACA 713
consensus_13625#2      GCCGCTCGTTCACTGTCCCTCTC------------------------------------- 602
                                                                                   

consensus_13625#3      ------------------------------------------------------------
consensus_13625#4      ------------------------------------------------------------
consensus_13625#0      ------------------------------------------------------------
consensus_13625#1      GAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCG 773
consensus_13625#2      ------------------------------------------------------------
                                                                                   

consensus_13625#3      ------------------------------------------------------
consensus_13625#4      ------------------------------------------------------
consensus_13625#0      ------------------------------------------------------
consensus_13625#1      TTGGTTGCATCTTCGCTGAAATGGTCAGAAAACAAGCTCTTTTTCCAGGTGACT 827
consensus_13625#2      ------------------------------------------------------