These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 3030 fasta sequence [CACACGGGCTATTTGCTCGCACGCCTCAGTCCACCTCCCCTGAGCTGTGCTGCTGCGCTGCGCTCTCGGACTCCTCCCAGATCCCCAATCCCCCCACGCTCTCCGGCCATCGCGGGTGGAGCAGGGCCGCCGCCGAGGGCTGGGGGGGAGCGCGAGTCCCGGGGATCCGAGCCATCTGCCGGTGGGCGGCGGCGGCGGCGGCGGAGTTGGGGTTCGTCGTCTTGGTCTTGGGTCTTCTTCGTCCCTCGCTGCGGGTGGGTAGCGCAGCGTCGGGGCAGATCCGGCTAGCCACTGCGACGCTGAATTCTGGAGATCCCCGCACATGGAGTCGCAGCGAGGGCAATCTCCTGATCGTGGATCAGACGCATCAGGACCAAAACAGTCTAGTGTTTCATCACATGGTAGACAAAGGAATTCATCATCTTCTATCTGTAAAGATTTTCTCCGGAAGTTTGTGGACAATGAACTATTGACATCAAGCCTAGAGGACTGGTTCTCTGGGCACAGTGAAGACTGTGGTTTCAAGAAGCCAGCATTTGATGTTCCTTTTGACCTAAGTGAACTACAAAATTTTGACTATGCTATAGAAGGTGTTACTTTCCAACAGCTAGTACGGATGCCAAATGCTCTTCATGCCTCAACATCAGATATTTTTGAAGCTACTGCACATCTTGCTTTGGAAGATTTTCTTCATGCAAGTATTAAGGGTTTGTGGGAAACTTTCTGGGGCCCTGATGAATCGATGCCTTTCTCTGTTGCCTGTATACACAGCACAAGCTCCAAATTTTATCCTGCTGAGAAGGCTATTAGCAGTGGGAGACTTGATGGCGTTTGTGCAACGGCTGTATTGCTGAAGAGTTTAAAGCATTCACAAGGAAGGTGGGATCATATTGTTGTACTGGCTTTGTTGAGACCTGATATTGGAATGTTTTCGGGGCAGAATGACCAACAGCCATCTCCGGCTGTTTTGGGGGAGGCACTATTCTTTGCCTTGCGTGTTCTACTTTCTCGAAGCCTTAGTAGGTCTTCCACAGTTCTTCAAAATTCAGATTGTGTTTACGTCCTTCTTGTTGATTCACAGTTTGGAGGAGTGGTAAATGTCCAAGGTGATCTGAACAAGCTTGATTTTGATTTGAACAATGTTTATGACTCTGCTGCAGAGTGGATAAAAAAGCATGCACAAATCACAGTTTCTTCCATAGACCGCGTATGGAACAAACTTGGCAATGCTAACTGGGGCGACATTGGGACTCTTCAAGTTCTCCTTGCAATTTTCCATTCAATGATCCAGTTCTGTGGTGCACCAAAGTATTCTCTTGATGAACTAGCTACAGAGCATAGTTCCCGATTACAGAGCCGAAGATCAGAAAGACATTTGGTTGGCAGGCAAGCTAATACAAATGGTTTGTTTCGATTCCAGCAGCAAAGTCATTCTCCTGAAATTGTTGAAGTACAAGAGGAGGGAGCTGTTAATGTAAAACCAAAGGAAATTTTGAAGCTTGAGGTAGGATCTGTTGTATTGATGGAGGATGCTGATTGGCAGAAGGGTTTTCAAATCAATGATATTCTTACAGACAGCGAACCTCCTATCTATAGTGCTACTCCTGTAGAAGAACCTACCAAAACCCATCTGTTGTATGTAGGCTCCAGCCCTTCTCATTTGGAGCCAGCATGGGAAGATATGAATTCTTGGTATCAAGTTCAAAGGCAGACCAAAGTA-CTTACTTTGATGAAGCAAAGAGGCATTTCAAGTAGATATGTCCCACAGATGGTTGC-TTCTGGA-CGTGTCGTCCATCCAGGCCCTTGTAACAAGCCTAACTCTAGTGGGAGTTGTGGCCATCCATGGTGCAGTACTCCAATACTTGTCACCTCGCCAGTTGGTGAAACTATTTCAAATCTGATTCGTAATGGGCTGTTTGGTGTTGAGGACGCTCTGAGATGTTGTCATGACTGTTTGTCTGCGCTTGCTGCTGCATCATCTGCAGGAATCCGTCATGGTGATATCCGGCCAGAGAATGTGATCCGTGTGAGCAATGGTTCAAGGCATCCATATTTTGTACTTATTGGATGGGGCCATGCTATCTTAGAAGACAGGGATCGGCCTCTAATGAATTTATTCTTCTCATCTACATTTGCTCTACAGGAAGGCAAGTTATGTGCAGCATCTGATGCAGAAAGCTTAATTTATCTGTTATTCTTTTGTTGTGGTGGAGTTTGCCCAGAGCTTGACTCAGTTGAAGGTGCACTTCAATGGAGGGAGACATCCTGGTCAAGGAGAGTTATACAGCAGAAGTTGGGTGATGTCTCAGCAGTGCTGAAAGCTTTTGCAGACTATGTTGACAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGAGAAGGTTACGAAGAACCA-TCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCTCATGTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTTCCATA-CCCTGTATTGTTGTTGTAGATAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCT-CCATCTTGCTCCATTTCATCTAAAGGGTATTTCCATAGTCACAATCTGCTGCTGATATCCTCAACTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGATATCTGCAACATG-ATTTATTTT-------GGCGAGTGCTCCTCTTAAGTCTTTGC-TTTTCTTCGGGTC-TCG-AGTGTGTGGTATAGTTGATCAATTTTTGGTCCTTTTGCTTTTTTGAAATTGTTCCAGAATGGATTTGTGATT----AG--AGG----TGGTGTGGCAGAGTAGCATTTTGTTCTGACTAAATTATTTTGCGGGTG-CTATGTT-CC-AAGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGTACAAACTTCAATCATGCTAGGCTGCAACTGCTGGGTGTTGATATGTTCGATGAAATGTCAAAAAAAAAAAAGTGTTCCCCTTAAAAAAAGGG] [+] EMBL AK100315 [CACACGGGCTATTTGCTCGCACGCCTCAGTCCACCTCCCCTGAGCTGTGCTGCTGCGCTGCGCTCTCGGACTCCTCCCAGATCCCCAATCCCCCCACGCTCTCCGGCCATCGCGGGTGGAGCAGGGCCGCCGCCGAGGGCTGGGGGGGAGCGCGAGTCCCGGGGATCCGAGCCATCTGCCGGTGGGCGGCGGCGGCGGCGGCGGAGTTGGGGTTCGTCGTCTTGGTCTTGGGTCTTCTTCGTCCCTCGCTGCGGGTGGGTAGCGCAGCGTCGGGGCAGATCCGGCTAGCCACTGCGACGCTGAATTCTGGAGATCCCCGCACATGGAGTCGCAGCGAGGGCAATCTCCTGATCGTGGATCAGACGCATCAGGACCAAAACAGTCTAGTGTTTCATCACATGGTAGACAAAGGAATTCATCATCTTCTATCTGTAAAGATTTTCTCCGGAAGTTTGTGGACAATGAACTATTGACATCAAGCCTAGAGGACTGGTTCTCTGGGCACAGTGAAGACTGTGGTTTCAAGAAGCCAGCATTTGATGTTCCTTTTGACCTAAGTGAACTACAAAATTTTGACTATGCTATAGAAGGTGTTACTTTCCAACAGCTAGTACGGATGCCAAATGCTCTTCATGCCTCAACATCAGATATTTTTGAAGCTACTGCACATCTTGCTTTGGAAGATTTTCTTCATGCAAGTATTAAGGGTTTGTGGGAAACTTTCTGGGGCCCTGATGAATCGATGCCTTTCTCTGTTGCCTGTATACACAGCACAAGCTCCAAATTTTATCCTGCTGAGAAGGCTATTAGCAGTGGGAGACTTGATGGCGTTTGTGCAACGGCTGTATTGCTGAAGAGTTTAAAGCATTCACAAGGAAGGTGGGATCATATTGTTGTACTGGCTTTGTTGAGACCTGATATTGGAATGTTTTCGGGGCAGAATGACCAACAGCCATCTCCGGCTGTTTTGGGGGAGGCACTATTCTTTGCCTTGCGTGTTCTACTTTCTCGAAGCCTTAGTAGGTCTTCCACAGTTCTTCAAAATTCAGATTGTGTTTACGTCCTTCTTGTTGATTCACAGTTTGGAGGAGTGGTAAATGTCCAAGGTGATCTGAACAAGCTTGATTTTGATTTGAACAATGTTTATGACTCTGCTGCAGAGTGGATAAAAAAGCATGCACAAATCACAGTTTCTTCCATAGACCGCGTATGGAACAAACTTGGCAATGCTAACTGGGGCGACATTGGGACTCTTCAAGTTCTCCTTGCAATTTTCCATTCAATGATCCAGTTCTGTGGTGCACCAAAGTATTCTCTTGATGAACTAGCTACAGAGCATAGTTCCCGATTACAGAGCCGAAGATCAGAAAGACATTTGGTTGGCAGGCAAGCTAATACAAATGGTTTGTTTCGATTCCAGCAGCAAAGTCATTCTCCTGAAATTGTTGAAGTACAAGAGGAGGGAGCTGTTAATGTAAAACCAAAGGAAATTTTGAAGCTTGAGGTAGGATCTGTTGTATTGATGGAGGATGCTGATTGGCAGAAGGGTTTTCAAATCAATGATATTCTTACAGACAGCGAACCTCCTATCTATAGTGCTACTCCTGTAGAAGAACCTACCAAAACCCATCTGTTGTATGTAGGCTCCAGCCCTTCTCATTTGGAGCCAGCATGGGAAGATATGAATTCTTGGTATCAAGTTCAAAGGCAGACCAAAGTA CTTACTTTGATGAAGCAAAGAGGCATTTCAAGTAGATATGTCCCACAGATGGTTGC TTCTGGA CGTGTCGTCCATCCAGGCCCTTGTAACAAGCCTAACTCTAGTGGGAGTTGTGGCCATCCATGGTGCAGTACTCCAATACTTGTCACCTCGCCAGTTGGTGAAACTATTTCAAATCTGATTCGTAATGGGCTGTTTGGTGTTGAGGACGCTCTGAGATGTTGTCATGACTGTTTGTCTGCGCTTGCTGCTGCATCATCTGCAGGAATCCGTCATGGTGATATCCGGCCAGAGAATGTGATCCGTGTGAGCAATGGTTCAAGGCATCCATATTTTGTACTTATTGGATGGGGCCATGCTATCTTAGAAGACAGGGATCGGCCTCTAATGAATTTATTCTTCTCATCTACATTTGCTCTACAGGAAGGCAAGTTATGTGCAGCATCTGATGCAGAAAGCTTAATTTATCTGTTATTCTTTTGTTGTGGTGGAGTTTGCCCAGAGCTTGACTCAGTTGAAGGTGCACTTCAATGGAGGGAGACATCCTGGTCAAGGAGAGTTATACAGCAGAAGTTGGGTGATGTCTCAGCAGTGCTGAAAGCTTTTGCAGACTATGTTGACAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGAGAAGGTTACGAAGAACCA TCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCTCATGTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTTCCATA CCCTGTATTGTTGTTGTAGATAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCT CCATCTTGCTCCATTTCATCTAAAGGGTATTTCCATAGTCACAATCTGCTGCTGATATCCTCAACTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGATATCTGCAACATG ATTTATTTT GGCGAGTGCTCCTCTTAAGTCTTTGC TTTTCTTCGGGTC TCG AGTGTGTGGTATAGTTGATCAATTTTTGGTCCTTTTGCTTTTTTGAAATTGTTCCAGAATGGATTTGTGATT AG AGG TGGTGTGGCAGAGTAGCATTTTGTTCTGACTAAATTATTTTGCGGGTG CTATGTT CC AAGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGTACAAACTTCAATCATGCTAGGCTGCAACTGCTGGGTGTTGATATGTTCGATGAAATGTCAAAAAAAAAAAAG ] [+] EMBL AK100111 [ GCGCTGCGCTCTCGGACTCCTCCCAGATCCCCAATCCCCCCACGCTCTCCGGCCATCGCGGGTGGAGCAGGGCCGCCGCCGAGGGCTGGGGGGGAGCGCGAGTCCCGGGGATCCGAGCCATCTGCCGGTGGGCGGCGGCGGCGGCGGCGGAGTTGGGGTTCGTCGTCTTGGTCTTGGGTCTTCTTCGTCCCTCGCTGCGGGTGGGTAGCGCAGCGTCGGGGCAGATCCGGCTAGCCACTGCGACGCTGAATTCTGGAGATCCCCGCACATGGAGTCGCAGCGAGGGCAATCTCCTGATCGTGGATCAGACGCATCAGGACCAAAACAGTCTAGTGTTTCATCACATGGTAGACAAAGGAATTCATCATCTTCTATCTGTAAAGATTTTCTCCGGAAGTTTGTGGACAATGAACTATTGACATCAAGCCTAGAGGACTGGTTCTCTGGGCACAGTGAAGACTGTGGTTTCAAGAAGCCAGCATTTGATGTTCCTTTTGACCTAAGTGAACTACAAAATTTTGACTATGCTATAGAAGGTGTTACTTTCCAACAGCTAGTACGGATGCCAAATGCTCTTCATGCCTCAACATCAGATATTTTTGAAGCTACTGCACATCTTGCTTTGGAAGATTTTCTTCATGCAAGTATTAAGGGTTTGTGGGAAACTTTCTGGGGCCCTGATGAATCGATGCCTTTCTCTGTTGCCTGTATACACAGCACAAGCTCCAAATTTTATCCTGCTGAGAAGGCTATTAGCAGTGGGAGACTTGATGGCGTTTGTGCAACGGCTGTATTGCTGAAGAGTTTAAAGCATTCACAAGGAAGGTGGGATCATATTGTTGTACTGGCTTTGTTGAGACCTGATATTGGAATGTTTTCGGGGCAGAATGACCAACAGCCATCTCCGGCTGTTTTGGGGGAGGCACTATTCTTTGCCTTGCGTGTTCTACTTTCTCGAAGCCTTAGTAGGTCTTCCACAGTTCTTCAAAATTCAGATTGTGTTTACGTCCTTCTTGTTGATTCACAGTTTGGAGGAGTGGTAAATGTCCAAGGTGATCTGAACAAGCTTGATTTTGATTTGAACAATGTTTATGACTCTGCTGCAGAGTGGATAAAAAAGCATGCACAAATCACAGTTTCTTCCATAGACCGCGTATGGAACAAACTTGGCAATGCTAACTGGGGCGACATTGGGACTCTTCAAGTTCTCCTTGCAATTTTCCATTCAATGATCCAGTTCTGTGGTGCACCAAAGTATTCTCTTGATGAACTAGCTACAGAGCATAGTTCCCGATTACAGAGCCGAAGATCAGAAAGACATTTGGTTGGCAGGCAAGCTAATACAAATGGTTTGTTTCGATTCCAGCAGCAAAGTCATTCTCCTGAAATTGTTGAAGTACAAGAGGAGGGAGCTGTTAATGTAAAACCAAAGGAAATTTTGAAGCTTGAGGTAGGATCTGTTGTATTGATGGAGGATGCTGATTGGCAGAAGGGTTTTCAAATCAATGATATTCTTACAGACAGCGAACCTCCTATCTATAGTGCTACTCCTGTAGAAGAACCTACCAAAACCCATCTGTTGTATGTAGGCTCCAGCCCTTCTCATTTGGAGCCAGCATGGGAAGATATGAATTCTTGGTATCAAGTTCAAAGGCAGACCAAAGTA CTTACTTTGATGAAGCAAAGAGGCATTTCAAGTAGATATGTCCCACAGATGGTTGC TTCTGGA CGTGTCGTCCATCCAGGCCCTTGTAACAAGCCTAACTCTAGTGGGAGTTGTGGCCATCCATGGTGCAGTACTCCAATACTTGTCACCTCGCCAGTTGGTGAAACTATTTCAAATCTGATTCGTAATGGGCTGTTTGGTGTTGAGGACGCTCTGAGATGTTGTCATGACTGTTTGTCTGCGCTTGCTGCTGCATCATCTGCAGGAATCCGTCATGGTGATATCCGGCCAGAGAATGTGATCCGTGTGAGCAATGGTTCAAGGCATCCATATTTTGTACTTATTGGATGGGGCCATGCTATCTTAGAAGACAGGGATCGGCCTCTAATGAATTTATTCTTCTCATCTACATTTGCTCTACAGGAAGGCAAGTTATGTGCAGCATCTGATGCAGAAAGCTTAATTTATCTGTTATTCTTTTGTTGTGGTGGAGTTTGCCCAGAGCTTGACTCAGTTGAAGGTGCACTTCAATGGAGGGAGACATCCTGGTCAAGGAGAGTTATACAGCAGAAGTTGGGTGATGTCTCAGCAGTGCTGAAAGCTTTTGCAGACTATGTTGACAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGAGAAGGTTACGAAGAACCA TCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCTCATGTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTTCCATA CCCTGTATTGTTGTTGTAGATAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCT CCATCTTGCTCCATTTCATCTAAAGGGTATTTCCATAGTCACAATCTGCTGCTGATATCCTCAACTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGATATCTGCAACATG ATTTATTTT GGCGAGTGCTCCTCTTAAGTCTTTGC TTTTCTTCGGGTC TCG AGTGTGTGGTATAGTTGATCAATTTTTGGTCCTTTTGCTTTTTTGAAATTGTTCCAGAATGGATTTGTGATT AG AGG TGGTGTGGCAGAGTAGCATTTTGTTCTGACTAAATTATTTTGCGGGTG CTATGTT CC AAGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGTACAAACTTCAATCATGCTAGGCTGCAACTGCTGGGTGTTGATATGTTCGATGAAATGTCAAAAAAAAAAAAG ] [+] EMBL CB668409 [ TGGGGCCCTGATGAATCGATGCCTTTCTCTGTTGCCTGTATACACAGCACAAGCTCCAAATTTTATCCTGCTGAGAAGGCTATTAGCAGTGGGAGACTTGATGGCGTTTGTGCAACGGCTGTATTGCTGAAGAGTTTAAAGCATTCACAAGGAAGGTGGGATCATATTGTTGTACTGGCTTTGTTGAGACCTGATATTGGAATGTTTTCGGGGCAGAATGACCAACAGCCATCTCCGGCTGTTTTGGGGGAGGCACTATTCTTTGCCTTGCGTGTTCTACTTTCTCGAAGCCTTAGTAGGTCTTCCACAGTTCTTCAAAATTCAGATTGTGTTTACGTCCTTCTTGTTGATTCACAGTTTGGAGGAGTGGTAAATGTCCAAGGTGATCTGAACAAGCTTGATTTTGATTTGAACAATGTTTATGACTCTGCTGCAGAGTGGATAAAAAAGCATGCACAAATCACAGTTTCTTCCATAGACCGCGTATGGAACAAACTTGGCAATGCTAACTGGGGCGACATTGGGACTCTTCAAGTTCTCCTTGCAATTTTCCATTCAATGATCCAGTTCTGTGGTGCACCAAAGTATTCTCTTGATGAACTAGCTACAGAGCATAGTTCCCGATTACAGAGCCGAAGATCAGAAAGACATTTGGTTGGCAGGCAAGCTAATACAAATGGTTTGTTTCGATTCCAGCAGCAAAGTCATTCTCCTGAAATTGTTGAAGTACAAGAGGAGGGAGCTGTTAATGTAAAACCAAAGGAAA ] [+] EMBL CA765513 [ GCCATCTCCGGCTGTTTTGGGGGAGGCACTATTCTTTGCCTTGCGTGTTCTACTTTCTCGAAGCCTTAGTAGGTCTTCTACAGTTCTTCAAAATTCAGATTGTGTATACGTCCTTCTTGTCGATTCACAGTTTGGAGGAGTGGTAAATGTCCAAGGTGATCTGAACAAGCTTGATTTTGATTTGAACAATGTTTATGACTCTGCTGCTGAGTGGATAAAAAAGCATGCACAAATCACAGTTTCTTCCATAGATCGTGTATGGAACAAACTTGGGAATGCTAACTGGGGCGACATTGGGACTCTTCAAGTTCTCCTTGCAATTTTCCATTCAATGATCCAGTTCTGTGGTGCACCAAAGTATTCTCTTGATGAACTAGCTACAGAGCATAGTTCCCGATTACAGAGTCGAAGATCAGAAAGACATTTGGTTGGCAGGCAAGCTAATACAAATGGTTTGTTTCGATTCCAGCAGCAAAGCCATTCTCCTGAAATCGTTGAAGTACAAGAGGAGGGAGCTGTTAATGTAAAACCAAAGGAAATTTTGAAGCTTGAGGTAGGATCTGTTGTATTGATGGAGGATGCTGATTGGCAGAAGGGTTTTCAAATCAATGATATTCTTACAGACAGTGAGCCTCCTATCTATAGTGCTACTCCTGTAGAAGAACCCACCAAAACCCATCTGTTATATGTAGGCTNCAGCCCTTCTCATTTGGAGCCAGCATGGGAAGATATGAATTCTTGGTATCAAGNTCAAAGGCAGACCAAAGTACCTTACTCTGATGAAGCAAAGAGGCATTTCAAGTAGATNTGTCCC CANATGGNTGCTTTTTGGACCGNGTCGTCCATNCAGGCCCTTGgna ] [+] EMBL CF326693 [ CTAACTGGGGCGACATTGGGACTCTTCAAGTTCTCCTTGCAATTTTCCATTCAATGATCCAGTTCTGTGGTGCACCAAAGTATTCTCTTGATGAACTAGCTACAGAGCATAGTTCCCGATTACAGAGCCGAAGATCAGAAAGACATTTGGTTGGCAGGCAAGCTAATACAAATGGTTTGTTTCGATTCCAGCAGCAAAGTCATTCTCCTGAAATTGTTGAAGTACAAGAGGAGGGAGCTGTTAATGTAAAACCAAAGGAAATTTTGAAGCTTGAGGTAGGATCTGTTGTATTGATGGAGGATGCTGATTGGCAGAAGGGTTTTCAAATCAATGATATTCTTACAGACAGCGAACCTCCTATCTATAGTGCTACTCCTGTAGAAGAACCTACCAAAACCCATCTGTTGTATGTAGGCTCCAGCCCTTCTCATTTGGAGCCAGCATGGGAAGATATGAATTCTTGGTATCAAGTTCAAAGGCAGACCAAAGTA CTTACTTTGATGAAGCAAAGAGGCATTTCAAGTAGATATGTCCCACAGATGGTTGC TTCTGGA CGTGTCGTCCATCCAGGCCCTTGTAACAAGCCTAACT ] [+] EMBL BI801212 [ tcCAGAAA CTTAA TTATCTGTTATACTTTT TTGT GTGGAGTTTGCCCAGAGCTTGACTCAGTTGAAGGTGCACTTCAATGGAGGGAGACATCCTGGTCAAGGAGAGTTATACA CAGAAATTGGGTGATGTCTCA CAGTGCTGAAAGCTTTTGCAGACTATGTTGACAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGAGAAGGTTACGAAGAACCACTCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCGCATGTTAGTGTGGAAGTAC ATATGGAAGATCAAGAATGGTCGTTCCATACCCCTGTATTGTTGTTGTAGATAATTTATTCGCC TCTCATAAAAGGTCCATAACTTAGTATCCCCCTCCCTTCTTGCTCCATGTCATCTAAAGGGTATTTCCATAGTCAC ATCTGCTGCTGATATCCTC ACTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGATATCTGC ACATG ATTTATTTT GGCGAGTGCTGCTCTTAAGTCaaaaa ] [-] EMBL AU174966 [ ACTTCAATTGAGGGAGACATCCTGGTCAAGGAGAGTTATACAGCAGAAGTTGGGTGATGTCTCAGCAGTGCTGAAAGCTTTTGCAGACTATGTTGACAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGANAAGGTTACGAAGAACCA TCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCTCATGTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTTCCATA CCCTGTATTGTTGTTGTAGATAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCT CCATCTTGCTCCATTTCATCTAAAGGGTATTTCCATAGTCACAATCTG ] [-] EMBL CB668410 [ GTCAAGGAGAGTTATACAGCAGAAGTTGGGTGATGTCTCAGCAGTGCTGAAAGCTTTTGCAGACTATGTTGACAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGAGAAGGTTACGAAGAACCA TCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCTCATGTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTTCCATA CCCTGTATTGTTGTTGTAGATAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCT CCATCTTGCTCCATTTCATCTAAAGGGTATTTCCATAGTCACAATCTGCTGTTGATATCCTCAACTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGATATCTGCAACATG ATTTATTTT GGCGAGTGCTCCTCTTAAGTCTTTGC TTTTCTTCGGGTC TGG AGTGTGTGGTATAGTTGATCAATTTTTGGTCCCTTTGCTTTTTTGAAATTGTTCCAGAATGGATTTGTGATT AG AGG TGGTGTGGCAGAGTAGCATTTTGTTCTGACTAAATTATTTTGCGGGTG CTATGTT CC AAGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGTACAAACTTCAATCATGTTAGGCTGCAACTGCTGGGTGTTGATATGTTCGAGGAAATGTCAAAAAAAAAAAGTTGTTCCCCTTAAAAAAAGGG] [-] EMBL AU174967 [ TTGGGTGATGTCTCAGCAGTGCTGAAAGCTTTTGCAGACTATGTTGACAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGAGAAGGTTACGAAGAACCA TCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCTCATGTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTTCCATA CCCTGTATTGTTGTTGTAGATAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCT CCATCTTGCTCCATTTCATCTAAAGGGTATTTCCATAGTCACAATCTGCTGCTGATATCCTCAACTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGATATCTGCAACATG ATTTATTTT GGCGAGTGCTCCTCTTAAGTCTT ] [+] EMBL BQ907821 [ GCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGATATCTGCAACATG ATTTATTTTTTTTTGGGGCGAGTGCTGCTCTTAAGTCATTGC TTTTCTTTGGGTC TCG AGTGTGTGGTATAGTTGATCAATTTTTGGTCCTTTTGCTTTTTTGAAATTGTTCCAGAATGGATTTGTGATTTTTAAGGAAGGGGGTTGGTGTGGCAGAGTAGCATTTTGTTCTGACTAAATTATTTTGCGGGTG CTATGTT CC AGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGTACAAACTTCAATCATGCTAGGCTGCAACTGCTGGGTGTTGATATGTTCGATGAAATGGCAAAAA ] [+] EMBL AU181492 [ aAACATGAATTTATTTT GGCGAGTGCTCCTCTTAAGTCTTTGCTTTTTCTTCGGGTCTTCGNAGTGTGTGGTATAGTTGATCAATTTTTGGTCCTTTTGCTTTTTTGAAATTGTTCCAGAATGGATTTGTGATT AA AGG TGGTGTGGCANAGTAGCATTTTGTTCTGANTAAATTATTTTGCGGGTG CTATGTT CCAAAGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGTACAAACTTCAATCATGCTAGGCTGCAAaaaaaaaa ] [+] EMBL BI813404 [ GCAGAGTAGCATTTTGTTCTGACTAAATTATTTTGCGGGTGCCTATGTTCCC AAGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGTAC AACTTCAATCATGCTAGGCTGC ACTGCTGGGTGTTGATATGTTCGATGAAATGGCAAAAA ] consensusID : consensus_13627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [ATAAGGCGGTTTTGAAAATTGGCCTTNGATTCAAAAATGCNTCTGTATGCAATTGTTNTCGAACANATTCGGNAGTTGAGTTACTGACACGACGACATGTTAGTGTGGAAGTACAATATGGAAGATCAAGAATGGTCGTTGCCATACCCTGTATTGTTGTTGTAGATAATTTATTCGCCTCTCATAAAAGGGTCCATAACTTAGTATCCCCTCATCTGCTCATGTCATCTAAGGTATTCATAGTCACAATCTGCTGCTGATATCTCACTGGATTCTGAAATGTGTCGCTTGCACAGACTGCAGTAAATCTCTGAGATATCTGCACATGATTATTGCCGATGCTGCTCT] [+] EMBL AA751797 [ATAAGGCGGTTTTGAAAATTGGCCTTNGATTCAAAAATGCNTCTGTATGCAATTGTTNTCGAACANATTCGGNAGTTGAGTTACTGACACGACGACATGTTAGTGTGGAAGTACAATATGGAAGATCAAGAATGGTCGTTGCCATACCCTGTATTGTTGTTGTAGATAATTTATTCGCCTCTCATAAAAGGGTCCATAACTTAGTATCCCCTCATCTGCTCATGTCATCTAAGGTATTCATAGTCACAATCTGCTGCTGATATCTCACTGGATTCTGAAATGTGTCGCTTGCACAGACTGCAGTAAATCTCTGAGATATCTGCACATGATTATTGCCGATGCTGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13627#0 CACACGGGCTATTTGCTCGCACGCCTCAGTCCACCTCCCCTGAGCTGTGCTGCTGCGCTG 60 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 CGCTCTCGGACTCCTCCCAGATCCCCAATCCCCCCACGCTCTCCGGCCATCGCGGGTGGA 120 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GCAGGGCCGCCGCCGAGGGCTGGGGGGGAGCGCGAGTCCCGGGGATCCGAGCCATCTGCC 180 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GGTGGGCGGCGGCGGCGGCGGCGGAGTTGGGGTTCGTCGTCTTGGTCTTGGGTCTTCTTC 240 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GTCCCTCGCTGCGGGTGGGTAGCGCAGCGTCGGGGCAGATCCGGCTAGCCACTGCGACGC 300 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGAATTCTGGAGATCCCCGCACATGGAGTCGCAGCGAGGGCAATCTCCTGATCGTGGATC 360 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AGACGCATCAGGACCAAAACAGTCTAGTGTTTCATCACATGGTAGACAAAGGAATTCATC 420 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 ATCTTCTATCTGTAAAGATTTTCTCCGGAAGTTTGTGGACAATGAACTATTGACATCAAG 480 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 CCTAGAGGACTGGTTCTCTGGGCACAGTGAAGACTGTGGTTTCAAGAAGCCAGCATTTGA 540 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGTTCCTTTTGACCTAAGTGAACTACAAAATTTTGACTATGCTATAGAAGGTGTTACTTT 600 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 CCAACAGCTAGTACGGATGCCAAATGCTCTTCATGCCTCAACATCAGATATTTTTGAAGC 660 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TACTGCACATCTTGCTTTGGAAGATTTTCTTCATGCAAGTATTAAGGGTTTGTGGGAAAC 720 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TTTCTGGGGCCCTGATGAATCGATGCCTTTCTCTGTTGCCTGTATACACAGCACAAGCTC 780 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 CAAATTTTATCCTGCTGAGAAGGCTATTAGCAGTGGGAGACTTGATGGCGTTTGTGCAAC 840 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GGCTGTATTGCTGAAGAGTTTAAAGCATTCACAAGGAAGGTGGGATCATATTGTTGTACT 900 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GGCTTTGTTGAGACCTGATATTGGAATGTTTTCGGGGCAGAATGACCAACAGCCATCTCC 960 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GGCTGTTTTGGGGGAGGCACTATTCTTTGCCTTGCGTGTTCTACTTTCTCGAAGCCTTAG 1020 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TAGGTCTTCCACAGTTCTTCAAAATTCAGATTGTGTTTACGTCCTTCTTGTTGATTCACA 1080 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GTTTGGAGGAGTGGTAAATGTCCAAGGTGATCTGAACAAGCTTGATTTTGATTTGAACAA 1140 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGTTTATGACTCTGCTGCAGAGTGGATAAAAAAGCATGCACAAATCACAGTTTCTTCCAT 1200 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AGACCGCGTATGGAACAAACTTGGCAATGCTAACTGGGGCGACATTGGGACTCTTCAAGT 1260 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TCTCCTTGCAATTTTCCATTCAATGATCCAGTTCTGTGGTGCACCAAAGTATTCTCTTGA 1320 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGAACTAGCTACAGAGCATAGTTCCCGATTACAGAGCCGAAGATCAGAAAGACATTTGGT 1380 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGGCAGGCAAGCTAATACAAATGGTTTGTTTCGATTCCAGCAGCAAAGTCATTCTCCTGA 1440 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AATTGTTGAAGTACAAGAGGAGGGAGCTGTTAATGTAAAACCAAAGGAAATTTTGAAGCT 1500 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGAGGTAGGATCTGTTGTATTGATGGAGGATGCTGATTGGCAGAAGGGTTTTCAAATCAA 1560 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGATATTCTTACAGACAGCGAACCTCCTATCTATAGTGCTACTCCTGTAGAAGAACCTAC 1620 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 CAAAACCCATCTGTTGTATGTAGGCTCCAGCCCTTCTCATTTGGAGCCAGCATGGGAAGA 1680 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TATGAATTCTTGGTATCAAGTTCAAAGGCAGACCAAAGTACTTACTTTGATGAAGCAAAG 1740 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AGGCATTTCAAGTAGATATGTCCCACAGATGGTTGCTTCTGGACGTGTCGTCCATCCAGG 1800 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 CCCTTGTAACAAGCCTAACTCTAGTGGGAGTTGTGGCCATCCATGGTGCAGTACTCCAAT 1860 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 ACTTGTCACCTCGCCAGTTGGTGAAACTATTTCAAATCTGATTCGTAATGGGCTGTTTGG 1920 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGTTGAGGACGCTCTGAGATGTTGTCATGACTGTTTGTCTGCGCTTGCTGCTGCATCATC 1980 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TGCAGGAATCCGTCATGGTGATATCCGGCCAGAGAATGTGATCCGTGTGAGCAATGGTTC 2040 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AAGGCATCCATATTTTGTACTTATTGGATGGGGCCATGCTATCTTAGAAGACAGGGATCG 2100 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GCCTCTAATGAATTTATTCTTCTCATCTACATTTGCTCTACAGGAAGGCAAGTTATGTGC 2160 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AGCATCTGATGCAGAAAGCTTAATTTATCTGTTATTCTTTTGTTGTGGTGGAGTTTGCCC 2220 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AGAGCTTGACTCAGTTGAAGGTGCACTTCAATGGAGGGAGACATCCTGGTCAAGGAGAGT 2280 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TATACAGCAGAAGTTGGGTGATGTCTCAGCAGTGCTGAAAGCTTTTGCAGACTATGTTGA 2340 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 CAGCATTTGTGGAACCCCATATCCGATGGACTATGAGATATGGTTGAGAAGGTTACGAAG 2400 consensus_13627#1 --------------------ATAAGGCGGTTTTGAAAATTGGCCTTNGAT--TCAAAAAT 38 ** * ** * * ** * * ** * * ** consensus_13627#0 AACCATCAATGAAGATCATGGCAAGGAGATTGATACATCAAGTTAGTACTGCAGCT-CAT 2459 consensus_13627#1 GCNTCTGTATGCAATTGTTNTCGAACANATTCGGNAGTTGAGTTACTGACACGACGACAT 98 * *** * * * * * * *** * ***** * * * *** consensus_13627#0 GTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTT-CCATACCCTGTATTGTT 2518 consensus_13627#1 GTTAGTGTGGAAGTACAATATGGAAGATCAAGAATGGTCGTTGCCATACCCTGTATTGTT 158 ******* ******** ************************* ***************** consensus_13627#0 GTTGTAGATAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCTCCAT 2578 consensus_13627#1 GTTGTAGATAATTTATTCGCCTCTCATA-AAAGGGTCCATAACTTAGTATCCCCT--CAT 215 ********************** ** *** ********************* *** consensus_13627#0 CTTGCTCCATTTCATCTAAAGGGTATTTCCATAGTCACAATCTGCTGCTGATATCCTCAA 2638 consensus_13627#1 CT-GCTC-ATGTCATCTAA--GGTATT--CATAGTCACAATCTGCTGCTGATATC-TCA- 267 ** **** ** ******** ****** ************************** *** consensus_13627#0 CTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAGATCTTCTGAGGA 2698 consensus_13627#1 -CTGGATT-CTGAAAT--GTGTCGC--TTGCACA-GACTGCAGTAAA---TCTCTGAG-A 316 ****** ****** ******* ******* ********** * ****** * consensus_13627#0 TATCTGCAACATGATTTATTTTGGCGAGTGCTCCTCTTAAGTCTTTGCTTTTCTTCGGGT 2758 consensus_13627#1 TATCTGCA-CATGATT-ATT---GCCGATGCTGCTCT----------------------- 348 ******** ******* *** ** **** **** consensus_13627#0 CTCGAGTGTGTGGTATAGTTGATCAATTTTTGGTCCTTTTGCTTTTTTGAAATTGTTCCA 2818 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 GAATGGATTTGTGATTAGAGGTGGTGTGGCAGAGTAGCATTTTGTTCTGACTAAATTATT 2878 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 TTGCGGGTGCTATGTTCCAAGTGCACCTAGTTCTTGTAAATGTTGTTCTTGTTCAGCTGT 2938 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 ACAAACTTCAATCATGCTAGGCTGCAACTGCTGGGTGTTGATATGTTCGATGAAATGTCA 2998 consensus_13627#1 ------------------------------------------------------------ consensus_13627#0 AAAAAAAAAAAGTGTTCCCCTTAAAAAAAGGG 3030 consensus_13627#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||