These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1264 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGAAAATCCAGCCCTCTCCCGACTCCCGAGCGAAGCAGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCT-CCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109342 [TTCCTCGAGCACTGTTGGCCTACTGGAAAATCCAGCCCTCTCCCGACTCCCGAGCGAAGCAGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCT CCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK071226 [ ACTCCCGAGCGAAGCAGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCT CCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACT GGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGT ] [+] EMBL AK068647 [ GCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCTCCCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGTTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAGAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGT ] [+] EMBL CA999933 [ TCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGCGTTGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCGGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACT GGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAAaaaaaaaaa ] consensusID : consensus_13630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1107 fasta sequence [TATCCCTTGATGCACGGCAACGGATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGGGAATTCTTCAAATACTATCCAGTACTAAAAACTGTATAGATTTGCAATGTGCTAGGTTTATACCGATTCAATTGAATTCCGTGGGGAGTTACGATCACAATGTTACCATTTGGCGCAAACTGTCATGTTACGAAACTATCAGGAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATATCAGCATAGGAATGTACTAATGTGCATCATTTGACTGGGGCAAATTGGGCCGCCAAATTCACGTTTTCACGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCA-TACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAAC-CAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGC-AATTCGTT-TCCTCC-TTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT-TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAATTTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAATGCATATTAAGACAATGTAGTCTTTTTTTTGAACGAAAATTGGGACAATGTAGTCGGATCTTCAAAACGACAACAAAATCATTAGCAGGACAGCAAAAAAAAAAAAAAAGGGGGCAGCTTGATTCAGCAAAAAATGGTACTCCTATAATT] [+] EMBL CB682587 [TATCCCTTGATGCACGGCAACGGATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGGGAATTCTTCAAATACTATCCAGTACTAAAAACTGTATAGATTTGCAATGTGCTAGGTTTATACCGATTCAATTGAATTCCGTGGGGAGTTACGATCACAATGTTACCATTTGGCGCAAACTGTCATGTTACGAAACTATCAGGAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATATCAGCATAGGAATGTACTAATGTGCATCATTTGACTGGGGCAAATTGGGCCGCCAAATTCACGTTTTCACGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGGGACGACAGGGCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCACATGTCGATGGAGAACCA TACTGGTACTATGAGTATCTAGATCGGAAATCTCCTACACAATCTGCACCAGAAC CAAATCTGGTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCAT ] [-] EMBL CB682588 [ AACTATCAGTAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATATCAGCATAGTAATGTACTAATGTGCATCATTTGACTGGTGCAGATTGGGCCGCCAAATTCACGTTTTC CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCA TACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAAC CAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGC AATTCGTT TCCTCC TTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAATTTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAAAGGATATTAAGACAATGTAGTCT ] [+] EMBL AA754382 [ TGCTGATTGGATTTTRGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCA TACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAAC CAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGKTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAG AAACAGTGGCATCCTTTCACCTYCTVCCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCA ] [+] EMBL OS38095 [ TGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATTACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACTCAAATCTGCTTCGCCATAACGTAGCCTGCAGTGCAGAACGAGATGGGTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCT CTA CCCCTTCAGAAAATTATGTTCC CCATACCAGGATCCATGGAGATTTTGGGGACAAT C AATT GGT TCCCCC T ] [-] EMBL CF326558 [ TACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGC AATTCGTT TCCTCC TTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAATTTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAATGCATATTAAGACAATGTAGTCTTTTTTTTGAACGAAAATTGGGACAATGTAGTCGGATCTTCAAAACGACAACAAAATCATTAGCAGGACAGCAAAAAAAAAAAAAAAGGGGGCAGCTTGATTCAGCAAAAAATGGTACTCCTATAATT] [+] EMBL BI811087 [ ATACCAGGATCCATGGAGATTTTGGTGACATTGCAAATTCGTTGTCCTCCGTGTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATGTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTAC AAATGAAGCCTAGTTCAGTTGTGC AAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTC AATTTTCTATCTGATTATTCAAATACCCAAAGTATCTTTTAAATGCAaaa ] consensusID : consensus_13630#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CGTTGTCGTCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGAGGCGCACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAAGGAAGCCTAGTTCAGTTGTGCCNNNNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL BE040446 [CGTTGTCGTCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGAGGCGCACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAAGGAAGCCTAGTTCAGTTGTGCCNNNNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_13630#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGANCCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGNTNNNTACTTGTACTCCTTGAATGCTNNNNNACTNNNNNAGCANNNNNNNNCTATGGGGCNNNCNTTACNNNNNNNNNNNGCATCCTNNNNNNN] [+] EMBL CF197338 [CGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGANCCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGNTNNNTACTTGTACTCCTTGAATGCTNNNNNACTNNNNNAGCANNNNNNNNCTATGGGGCNNNCNTTACNNNNNNNNNNNGCATCCTNNNNNNN] consensusID : consensus_13630#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 105 fasta sequence [CTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTAGCATCCTTTCACCTCCTACCGCCTACAGTTAAATAGTGTTTCATCCATACCAGGATT] [+] EMBL OS38157 [CTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTAGCATCCTTTCACCTCCTACCGCCTACAGTTAAATAGTGTTTCATCCATACCAGGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13630#1 ------------------------------------------------------------ consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 TTCCTCGAGCACTGTTGGCCTACTGGAAAATCCAGCCCTCTCCCGACTCCCGAGCGAAGC 60 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 ------------------------------------------------------------ consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 AGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGC 120 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 ------------------------------------------------------------ consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 TGCTCTTCTCTCCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCC 180 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 ------------------------------------------------------------ consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 CAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTC 240 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 ------------------------------------------------------------ consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 GACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGG 300 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 -----------------------------------------TATCCCTTGATGCACGGCA 19 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 CCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCT 360 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 ACGGATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGGGAAT 79 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 CGTGTCTTCGTTCGTGCTCGTCCTCCCGGT--TTCAGATTCGCATGCTGTTGCCGAGATG 418 consensus_13630#3 ------------CGTGCTCGTCCTCCCGGT--TTCAGATTCGCATGCTGTTGCCGAGATG 46 consensus_13630#1 TCTTCAAATACTATCCAGTACTAAAAACTGTATAGATTTGCAATGTGCTAGGTTTATACC 139 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 GATGAAGATGTGA--AAATGGCTACGCTAGTTGACCCGATCAATGCA-TATTCTTTTCTT 475 consensus_13630#3 GATGAAGATGTGA--AAATGGCTACGCTAGTTGACCCGATCAATGCA-TATTCTTTTCTT 103 consensus_13630#1 GATTCAATTGAATTCCGTGGGGAGTTACGATCACAATGTTACCATTTGGCGCAAACTGTC 199 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 TACCCAGTTGAATTGCCAGGAAAGAAAT--TCACATTCAAATGGGTAGAATCCAGAAAAC 533 consensus_13630#3 TACCCAGTTGAATTGCCAGGAAAGAAAT--TCACATTCAAATGGGTAGAATCCAGAAAAC 161 consensus_13630#1 ATGTTACGAAACTATCAGGAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATA 259 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 CAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATT--GTATC 591 consensus_13630#3 CAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATT--GTATC 219 consensus_13630#1 TCAGCATAGGAATGTACTAATGTGCATCATTTGACTGGGGCAAATTGGGCCGCCAAATTC 319 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------CGTTGTCGTCTCAGTCTCGATTGGGCCGCCAAATTC 36 consensus_13630#0 GGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTC 651 consensus_13630#3 GGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTC 279 consensus_13630#1 ACGTTTTCACGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 379 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ACGTTTTC-CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 95 consensus_13630#0 ACGTTTTC-CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 710 consensus_13630#3 ACGTTTTC-CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 338 consensus_13630#1 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 439 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 155 consensus_13630#0 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 770 consensus_13630#3 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 398 consensus_13630#1 TCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 499 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 TCCTTGAGGCGCACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 215 consensus_13630#0 TCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 830 consensus_13630#3 TCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 458 consensus_13630#1 TTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCT 559 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 TTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCT 275 consensus_13630#0 TTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCT 890 consensus_13630#3 TTCGGAAATCTCCTACACAATCTGCACCAGANCCAAATCTGTTTCGCCATAACGTAGCCT 518 consensus_13630#1 GCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGT 619 consensus_13630#4 -----------------------------------------------CTCAGCAAGCAGT 13 consensus_13630#2 GCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGT 335 consensus_13630#0 GCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGT 950 consensus_13630#3 GCACTGCTGAACGAGNTNNNTACTTGTACTCCTTGAATGCTNNNNNACTNNNNNAGCANN 578 ** **** consensus_13630#1 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTA 679 consensus_13630#4 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTAGCATCCTTTCACCTCCTACCGCCTA 73 consensus_13630#2 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTA 395 consensus_13630#0 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTA 1010 consensus_13630#3 NNNNNNCTATGGGGCNNNCNTTACNNNNNNNNNNNGCATCCTNNNNNNN----------- 627 ********* * **** ******* consensus_13630#1 CAGA-AAATTATGTTCC-TCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTC 737 consensus_13630#4 CAGTTAAATAGTGTTTCATCCATACCAGGATT---------------------------- 105 consensus_13630#2 CAGA-AAATTATGTTCC-TCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTC 453 consensus_13630#0 CAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGT 1070 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 GTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACAT 797 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 GTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACAT 513 consensus_13630#0 TTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT 1130 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 ATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCT 857 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAAGGAAGCCT 573 consensus_13630#0 TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAG 1190 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 AGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAAT 917 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 AGTTCAGTTGTGCCNNNNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---- 629 consensus_13630#0 TTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCAAAAAAAAAAA 1250 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 TTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAATGCATATTAAGACAATGTAG 977 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 AAAAAAGGCCACAT---------------------------------------------- 1264 consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 TCTTTTTTTTGAACGAAAATTGGGACAATGTAGTCGGATCTTCAAAACGACAACAAAATC 1037 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 ------------------------------------------------------------ consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 ATTAGCAGGACAGCAAAAAAAAAAAAAAAGGGGGCAGCTTGATTCAGCAAAAAATGGTAC 1097 consensus_13630#4 ------------------------------------------------------------ consensus_13630#2 ------------------------------------------------------------ consensus_13630#0 ------------------------------------------------------------ consensus_13630#3 ------------------------------------------------------------ consensus_13630#1 TCCTATAATT 1107 consensus_13630#4 ---------- consensus_13630#2 ---------- consensus_13630#0 ---------- consensus_13630#3 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||