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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2165 fasta sequence
[AAAAAAAGAACCATTTGCAAATTGCAAAAACGTCCTTTCTCCAGTTCTCCTCCCCTGAGCTTCTCCCAACAAGAACACCCACTTGCTCTCTTCCCCTCTCTCTCTCGCCCCTCGAATTCTGGCGGCGAAGCGTACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGAAATCGTAAAAACAGGAGTTTGAGGAGGGCGGATTCATTAGGTGTCATCCGTGTGATTCCAACAACTCCCCGACCTATCCCAGTTAATACAACTGCATCAAGTGATGGGATTGAGGAGACAGTGGATGTTCCTGGAGATGGAGGCAAAGATATCCCTGAAGAAGAGGCAGTCTGCAGAATTTGTCTAGTTGAACTAAATGAAGGAGGGGAAACACTTAAAATGGAGTGCAGCTGCAAAGGGGAACTTGCTCTTGCACACCAAGACTGCGCTGTCAAATGGTTTAGCATCAAGGGAAACAAGATATGTGATGTTTGTAAGCAAGAAGTTCAAAATTTGCCTGTCACTTTGTTGAGAATACCAACTCAAACTGCTAATAGGCGAGTAACAAATGGTGCTCATCAAAGAGCCTCTCAACAATACAGATTTTGGCAGGACATTCCAATTTTGGTCATGGTTAGCATGCTTGCATACTTCTGCTTCTTGGAACAACTTCTGGTTACAGATTTGCTGTCACACGCACTGGCAATTTCGTTGCCTTTCTCATGCGTGTTGGGCCTCCTTTCTTCCATGATAGCATCCACCATGGTAACCAAGAGTTATCTATGGGCCTATGCTTCGTTCCAGTTTGCTATTGTGATACTGTTTGCTCATATCTTCTACAATGTGTTAAAAGTAAATCCAGTCCTTGCGGTCCTACTATCCTCATTCACTGGGTTTGGGATTGCTATCAGTGCGAACTCAATGCTAGTGGAATACTTGAGGTGGAGATCTAGGAGGAATCAACAGCTAGCTCAAACTGTCGATGATGGTCAGCGACAAGAACCTGGAAGTAATGCTGTAAATGAAAACAATGGTGATAGACAGCAAGCGCAGCATCGAGAATCTGGAGATAACATTGTATGACAATTCAGATTAAGAAGCGCAATGAATGTGAATAGCTAGCTTTGATATGTTCAGT-AGGTTTAGCTCGTCGAACTTCAGAATCACCTATGCAAGAATAGGAAACATGGAGCAAATTTCCAATGGCGACAGCATAAGATGATAAGAGGCT-AT-GTGACAAGT-GAGAACATGGAGAAT-G-CGGCGGATATAGTTAGGCAACA-CAGAGAGCTGAACCAAACTAT-CCA-TTGTACACGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTCTGAACTTAGAAATTATTCGGGTAAAAAAATAGAGAAGAACTGTATGCAGTGCGTGGGGATTGAATTGAAATGAAATATGGAAATGATGTTCGCTTCAAAAAAAAAA]
[+] EMBL AK100432 [AAAAAAAGAACCATTTGCAAATTGCAAAAACGTCCTTTCTCCAGTTCTCCTCCCCTGAGCTTCTCCCAACAAGAACACCCACTTGCTCTCTTCCCCTCTCTCTCTCGCCCCTCGAATTCTGGCGGCGAAGCGTACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGAAATCGTAAAAACAGGAGTTTGAGGAGGGCGGATTCATTAGGTGTCATCCGTGTGATTCCAACAACTCCCCGACCTATCCCAGTTAATACAACTGCATCAAGTGATGGGATTGAGGAGACAGTGGATGTTCCTGGAGATGGAGGCAAAGATATCCCTGAAGAAGAGGCAGTCTGCAGAATTTGTCTAGTTGAACTAAATGAAGGAGGGGAAACACTTAAAATGGAGTGCAGCTGCAAAGGGGAACTTGCTCTTGCACACCAAGACTGCGCTGTCAAATGGTTTAGCATCAAGGGAAACAAGATATGTGATGTTTGTAAGCAAGAAGTTCAAAATTTGCCTGTCACTTTGTTGAGAATACCAACTCAAACTGCTAATAGGCGAGTAACAAATGGTGCTCATCAAAGAGCCTCTCAACAATACAGATTTTGGCAGGACATTCCAATTTTGGTCATGGTTAGCATGCTTGCATACTTCTGCTTCTTGGAACAACTTCTGGTTACAGATTTGCTGTCACACGCACTGGCAATTTCGTTGCCTTTCTCATGCGTGTTGGGCCTCCTTTCTTCCATGATAGCATCCACCATGGTAACCAAGAGTTATCTATGGGCCTATGCTTCGTTCCAGTTTGCTATTGTGATACTGTTTGCTCATATCTTCTACAATGTGTTAAAAGTAAATCCAGTCCTTGCGGTCCTACTATCCTCATTCACTGGGTTTGGGATTGCTATCAGTGCGAACTCAATGCTAGTGGAATACTTGAGGTGGAGATCTAGGAGGAATCAACAGCTAGCTCAAACTGTCGATGATGGTCAGCGACAAGAACCTGGAAGTAATGCTGTAAATGAAAACAATGGTGATAGACAGCAAGCGCAGCATCGAGAATCTGGAGATAACATTGTATGACAATTCAGATTAAGAAGCGCAATGAATGTGAATAGCTAGCTTTGATATGTTCAGT AGGTTTAGCTAGTCGAACTTCAGAATCACCTATGCAAGAATAGGAAACATGGAGCAAATTTCCAATGGCGACAGCATAAGATGATAAGAGGCT AT GTGACAAGT GAGAACATGGAGAAT G CGGCGGATATAGTTAGGCAACA CAGAGAGCTGAACCAAACTAT CCA TTGTACACGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTCTGAACTTAGAAATTATTCGGGTAAAAAAATAGAGAAGAACTGTATGCAGTGCGTGGGGATTGAATTGAAATGAAATATGGAAATGA ]
[+] EMBL CB624758 [ GCGCCTTAGCGTACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCTGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCGTTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACGAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGTTCAAGCAAGAATTATGCGCTCACTTTCAGTACCAGGAAATCGTAAAAACAGGAGTTTGAGGAGGGCGGATTCATTATGTGTCATCCGTGTGATTCCAACAACTCCCCGACCTATCCCAGTTAATACAACTGCATCAAGTGATGGGATTGAGGAGACAGTGGATGTTCCTGGAGATGGAGGCGAAGATATCCCTGAAGAAGAGGCAGTCTGCATAATTTGTCTAGT ]
[+] EMBL CB626869 [ CGTACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCGTTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGAAATCGTAAAAACAGGAGTTTGAGGAGGGCGGATTCATTAGGTGTCATCCGTGTGATTCCAACAACTCCCCGACCTATCCCAGTTAATACAACTGCATCAAGTGATGGGATTGAGGAGACAGT ]
[+] EMBL CB664853 [ ACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGAAATCGTAAAAACAGGAGTTTGAGGAGGGCGGATTCATTAGGTGTCATCCGTGTGATTCCAACAACTCCCCGACCTATCCCAGTTAATACAACTGCATCAAGTGATGGGATTGAGGAGACAGTGGATGTTCCTGGAGATGGAGGCAAAGATATCCCTGAAGAAGAGGCAGTCTGCAGAATTTGTCTAGTTGAACTAAATGAACGAGGGGACACACTTAAAATGGAGTGCAGCTGCTAAGGGGAACTTGCTCTTGCACACCA ]
[-] EMBL CB664854 [ ATCGTCATTCACTGGGTTTGGGATTGCTATCAGTGCGAACTCAATGCTAGTGGAATACTTGAGGTGGAGATCTAGGAGGAATCAACAGCTAGCTCAAACTGTCGATGATGGTCAGCGACACGAACCTGGAAGTAATGCTGTAAATGAAAACAATGGTGATAGACAGCAAGCGCAGCATCGAGAATCTGGAGATAACATTGTATGACAATTCAGATTAAGAAGCGCAATGAATGTGAATAGCTAGCTTTGATATGTTCAGT AGGTTTAGCTCGTCGAACTTCAGAATCACCTATGCAAGAATAGGAAACATGGAGCAAATTTCCAATGGCGACAGCATAAGATGATAAGAGGCT AT GTGACAAGT GAGAACATGGAGAAT G CGGCGGATATAGTTAGGCAACA CAGAGAGCTGAACCAAACTAT CCA TTGTACACGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTCTGAACTTAGAAATTATTCGGGTAAAAAAATAGAGAAGAACTGTATGCAGTGCGTGGGGATTGAATTGAAATGAAATATGGAAATGATGTTCGCTTCAAA ]
[+] EMBL CA766557 [ TGGTGATAGACAGCAAGCGCAGCATCGAGAATCTGGAGATAACATTGTATGACAATTCAGATTAAGAAGCGCAATGAATGTGAATAGCTAGCTTTGATATGTTCAGT AGGTTTAGCTCGTCGAACTTCAGAATCACCTATGCAAGAATAGGAAACATGGAGCAAATTTCCAATGGCGACAGCATAAGATGATAAGAGGCT AT GTGACAAGT GAGAACATGGAGAAT G CGGCGGATATAGTTAGGCAACA CAGAGAGCTGAACCAAACTAT CCA TTGTACGCGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTCTGAAC ]
[+] EMBL BQ906087 [ TAGACAGCAAGCGCAGCATCGAGAATCTGGAGATAACCTTGTATGACNATTCAGATTAAGAAGCGCAATGAATGTGAATAGCTAGCTTTGATATGTTCAGTGAGGTTTAGCTCGTCGAACTTCAGAATCACCTATGCAAGAATAGGAAACATGGAGCAAATTTCCAATGGCGACAGCATAAGATGATAAGAGGCTGATGGTGACAAGTGGAGAACATGGAGAATGG CGGCGGATATAGTTAGGCAACA CAGAGAGCTGAACC AACTATGCCA TTGTACACGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAANCTGAAGGCAGAGAATTTTAGATAAT ]
[-] EMBL CF278708 [ AGGAAACATGGAGCAAATTTCCAATGGCGACAGCATAAGATGATAAGAGGCT AT GTGACAAGT GAGAACATGGAGAAT G CGGCGGATATAGTTAGGCAACA CAGAGAGCTGAACCAAACTAT CCA TTGTACACGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTCTGAACTTAGAAATTATTCGGGTAAAAAAA ]
[+] EMBL BI812810 [ atGCCACCCCATAAGATGATAAGAGGCT AT GTGACAAGT GAGAACATGGAGAAT CGGCGGATATAGTTAGGCAACA CAGAGAGCTGAACCCAACTAT CCACTTGTACCCGGTATTAATTTA CAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTAC AAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTCTGAACTTAGAAATTATTCGGGTAAAAAGATAGAGAAGAACTGTATGCCGTGCGTGGGGATTGAATTGAAATGAAATATGGAAATGATGTTCGCTTCAAAAAAAAAA]
[+] EMBL BQ908719 [ ccgGGAGAAT GTCGGCGGATATAGTTAGGCAACACCAGAGAGCTGAACCCAACTAT CCA TTGTACACGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTCTGAACTTAGAAATTATTCGGGTAAAAAGATAGAGAAGAACTGTATGCAGTGCGTGGGGATTGAATTGAAATGAAATATGGAAATGATGTTCGCTTCAAAAAAAAA ]
consensusID : consensus_13636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence
[AGGCCATAAGGTACATGTCTGCTGGTGCTACTCCATGTATGCTCGGTAGCTCAGATGAGTGCCATGAGCTTCATTAAATTGTATCGGCTCAAGAATCACTATTTATCCCTGATGATTGATGCCTTTACCTTGTTCATATTCCATTAGTCTTGCAAGTTTAATTTAATGGAATTTATGTAGCATAGCTTGCTGATAATACTGTTTGCTGACTTTGTAGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCGCTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCGTTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGNTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGGAAATCGTAAAAACAGGAGTTTGAGGAGGGCGGGATTCATTANGTGTCATTCCGNGGGGATTNCAACAACTNCCCGACCCTATNCCAGTTAATACAACTGCATCAAGNGATGGGATTGAGGANACAGNGGGATGTTNCTGGAGATGGGAGGCGAAANATT]
[+] EMBL CA765522 [AGGCCATAAGGTACATGTCTGCTGGTGCTACTCCATGTATGCTCGGTAGCTCAGATGAGTGCCATGAGCTTCATTAAATTGTATCGGCTCAAGAATCACTATTTATCCCTGATGATTGATGCCTTTACCTTGTTCATATTCCATTAGTCTTGCAAGTTTAATTTAATGGAATTTATGTAGCATAGCTTGCTGATAATACTGTTTGCTGACTTTGTAGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCGCTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCGTTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGNTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGGAAATCGTAAAAACAGGAGTTTGAGGAGGGCGGGATTCATTANGTGTCATTCCGNGGGGATTNCAACAACTNCCCGACCCTATNCCAGTTAATACAACTGCATCAAGNGATGGGATTGAGGANACAGNGGGATGTTNCTGGAGATGGGAGGCGAAANATT]
consensusID : consensus_13636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence
[TGACTGGACTGAAGGAGTAGAAAAACACCCACTTGCTCTCTTCCCCTCTCTCTCTCGCCCCTCGAATTCTGGCGGCGAAGCGTACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGAAATCGTA]
[+] EMBL CF278707 [TGACTGGACTGAAGGAGTAGAAAAACACCCACTTGCTCTCTTCCCCTCTCTCTCTCGCCCCTCGAATTCTGGCGGCGAAGCGTACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAGCCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTTTCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAACGTACACATTCTTTGCCAGTCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTACCAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGAAATCGTA]
[+] EMBL CF306097 [ TGGCGGTGAAGCGTACATGGACAAAGCGGAGGAGGGCCAGTCTTCGGAGCCCGCCGATTCCGCGGCACCAACCCAGGATGACAGTGTGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGTTAGT CATTTAGGACCCTGGATAACCAAATAGGCACTTCAGCGAGATTTAATATATCCCCTAGCCCCAGCTCAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGAGCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGATCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGATCATTATCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13636#0 --------------------AAAAAAAGAACCATTTGCAAATTGCAAAAACGTCCTTTCT 40
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 AGGCCATAAGGTACATGTCTGCTGGTGCTACTCCATGTATGCT-CGGTAGCTCAGATGAG 59
consensus_13636#0 CCAGTTCTCCTCCCCTGAGCTTCTCCCA-ACAAGAACACCCACTTGCTCTCTTCCCCTCT 99
consensus_13636#2 -----------TGACTGGACTGAAGGAGTAGAAAAACACCCACTTGCTCTCTTCCCCTCT 49
consensus_13636#1 TGCCATGAGCTTCATTAAATTGTATCGGCTCAAGAATCACTATTTATCCCTGATGATTGA 119
* * ** ** * * ** * *
consensus_13636#0 CTCTCTCGCCCC--TCGAATTCTGGCGGCG----AAGCGTACATGGACAAAGCGGAGGAG 153
consensus_13636#2 CTCTCTCGCCCC--TCGAATTCTGGCGGCG----AAGCGTACATGGACAAAGCGGAGGAG 103
consensus_13636#1 TGCCTTTACCTTGTTCATATTCCATTAGTCTTGCAAGTTTAATTTAATGGAATTTATGTA 179
* * ** ** **** * *** ** * * * * *
consensus_13636#0 GGCCAGTCTTCGGA-------GCCCGCCGATTCCGC-GGCACCAGCCCAGGATGACAGTG 205
consensus_13636#2 GGCCAGTCTTCGGA-------GCCCGCCGATTCCGC-GGCACCAGCCCAGGATGACAGTG 155
consensus_13636#1 GCATAGCTTGCTGATAATACTGTTTGCTGACTTTGTAGGCACCAGCCCAGGATGACAGTG 239
* ** * * ** * ** ** * * ***********************
consensus_13636#0 TGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTA 265
consensus_13636#2 TGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTA 215
consensus_13636#1 TGCAAACTGCATCTGGGCATAATTCGCGAAGGCCAAACCTTTCTTTGCAAATACCAGCTA 299
************************************************************
consensus_13636#0 GGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCT 325
consensus_13636#2 GGACCCTGGATAACCAAATAGGCACTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCT 275
consensus_13636#1 GGACCCTGGATAACCAAATAGGCGCTTCAGCGAGAATTAATATATCCCCTAGCCCCAGCT 359
*********************** ************************************
consensus_13636#0 CAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGA 385
consensus_13636#2 CAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGA 335
consensus_13636#1 CAACGAGAGCAGGATTGCCCCCGAGGCCTAATTCAACTAGAACAAAATCTTCTCTGAAGA 419
************************************************************
consensus_13636#0 GCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGA 445
consensus_13636#2 GCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGA 395
consensus_13636#1 GCATCATTCCGCAACAGAGTTTCAGGGCGAGAAGTTCAGCACAGGAAGGTGATCGGGCGA 479
************************************************************
consensus_13636#0 TCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGAT 505
consensus_13636#2 TCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGAT 455
consensus_13636#1 TCCTTCTGGTTCCTGGGACACCATCAGAAGGGCAGCAGGATAATACATCAACGTTGAGAT 539
************************************************************
consensus_13636#0 CATTTTCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAACGTACACATTCTTTGCCAG 565
consensus_13636#2 CATTTTCTTTTAGAAAAGTCATAAACTCATTATCCGCAAAACGTACACATTCTTTGCCAG 515
consensus_13636#1 CATTTTCTTTTAGAAAAGTCATAAACTCGTTATCCGCAAAACGTACACATTCTTTGCCAG 599
**************************** *******************************
consensus_13636#0 TCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTAC 625
consensus_13636#2 TCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTAC 575
consensus_13636#1 TCACACCTATAGCAACTTCAGACAAAACTTCTTCTCCGGCAAATCAGATCAACAACCTAC 659
************************************************************
consensus_13636#0 CAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGG-A 684
consensus_13636#2 CAACCACAGATGATCAAGATGTTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGG-A 634
consensus_13636#1 CAACCACAGATGATCAAGATGNTCAAGCAAGAATTAGGCGCTCACTTTCAGTACCAGGGA 719
********************* ************************************ *
consensus_13636#0 AATCGTAAAAACAGGAGTTTGAGGAGGGCGG-ATTCATTAGGTGTCATCC--GTGTGATT 741
consensus_13636#2 AATCGTA----------------------------------------------------- 641
consensus_13636#1 AATCGTAAAAACAGGAGTTTGAGGAGGGCGGGATTCATTANGTGTCATTCCGNGGGGATT 779
*******
consensus_13636#0 CCAACAACTCCCCGACC-TATCCCAGTTAATACAACTGCATCAAGTGATGGGATTGAGGA 800
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 NCAACAACTNCCCGACCCTATNCCAGTTAATACAACTGCATCAAGNGATGGGATTGAGGA 839
consensus_13636#0 GACAGTGG-ATGTTCCTGGAGATGGAGGCAAAGATATCCCTGAAGAAGAGGCAGTCTGCA 859
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 NACAGNGGGATGTTNCTGGAGATGGGAGGCGAAANATT---------------------- 877
consensus_13636#0 GAATTTGTCTAGTTGAACTAAATGAAGGAGGGGAAACACTTAAAATGGAGTGCAGCTGCA 919
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 AAGGGGAACTTGCTCTTGCACACCAAGACTGCGCTGTCAAATGGTTTAGCATCAAGGGAA 979
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 ACAAGATATGTGATGTTTGTAAGCAAGAAGTTCAAAATTTGCCTGTCACTTTGTTGAGAA 1039
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 TACCAACTCAAACTGCTAATAGGCGAGTAACAAATGGTGCTCATCAAAGAGCCTCTCAAC 1099
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 AATACAGATTTTGGCAGGACATTCCAATTTTGGTCATGGTTAGCATGCTTGCATACTTCT 1159
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 GCTTCTTGGAACAACTTCTGGTTACAGATTTGCTGTCACACGCACTGGCAATTTCGTTGC 1219
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 CTTTCTCATGCGTGTTGGGCCTCCTTTCTTCCATGATAGCATCCACCATGGTAACCAAGA 1279
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 GTTATCTATGGGCCTATGCTTCGTTCCAGTTTGCTATTGTGATACTGTTTGCTCATATCT 1339
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 TCTACAATGTGTTAAAAGTAAATCCAGTCCTTGCGGTCCTACTATCCTCATTCACTGGGT 1399
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 TTGGGATTGCTATCAGTGCGAACTCAATGCTAGTGGAATACTTGAGGTGGAGATCTAGGA 1459
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 GGAATCAACAGCTAGCTCAAACTGTCGATGATGGTCAGCGACAAGAACCTGGAAGTAATG 1519
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 CTGTAAATGAAAACAATGGTGATAGACAGCAAGCGCAGCATCGAGAATCTGGAGATAACA 1579
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 TTGTATGACAATTCAGATTAAGAAGCGCAATGAATGTGAATAGCTAGCTTTGATATGTTC 1639
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 AGTAGGTTTAGCTCGTCGAACTTCAGAATCACCTATGCAAGAATAGGAAACATGGAGCAA 1699
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 ATTTCCAATGGCGACAGCATAAGATGATAAGAGGCTATGTGACAAGTGAGAACATGGAGA 1759
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 ATGCGGCGGATATAGTTAGGCAACACAGAGAGCTGAACCAAACTATCCATTGTACACGGT 1819
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 ATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTTGTTCAGTGTAAGTTTAGTAGTTCT 1879
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 GGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCCATAC 1939
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 AGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTA 1999
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 GTCTGTGTGAGGAGAAATGTGAAGGCAGAGAATTTTAGATAATGACATATTTCAGAGTTC 2059
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 TGAACTTAGAAATTATTCGGGTAAAAAAATAGAGAAGAACTGTATGCAGTGCGTGGGGAT 2119
consensus_13636#2 ------------------------------------------------------------
consensus_13636#1 ------------------------------------------------------------
consensus_13636#0 TGAATTGAAATGAAATATGGAAATGATGTTCGCTTCAAAAAAAAAA 2165
consensus_13636#2 ----------------------------------------------
consensus_13636#1 ----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||