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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1203 fasta sequence
[TCCGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG-GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC-TTCTGATTCGGGCTATTAA-GGATGCT--GGG-TG-CG-TGAA---GA-GA-TTTA--TTCC-AGC--GGAATA-TGGAC-TTGA-TCCCAC-AAAGGTTCAAA--TTTG-TGGC-ATGGACC-ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAATCAAGTCTTAGTTTGTATGTTCAATTAATCTCATTCAATAATATGATCTTTTTTGGGTGTTCCCTG]
[+] EMBL AK106021 [TCCGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATT ]
[+] EMBL AK068080 [ CGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGGACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAATCAAGTCTTAGT ]
[+] EMBL AK104529 [ CTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTG ]
[+] EMBL AU164170 [ CTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGA CAGGNGTGCTGGTGGTCGGCGCCACCGGGNGCATCGGGGGATGCCTCGTGCGCGCCA CCTCGCCGCCGG CACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAA CGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTGTTGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCC ]
[+] EMBL AU064287 [ CTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGA NAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAG CTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGCTTTCTGATTCGGGCTATTAAGGGATGCTTGGGGTTGCCGTTGAAAAGGAGGATTTTANTTTCCAAGCCGGGAATATTGGACTTTGATTCCCACAAAAGGTTCAAAATTTTT TGGCAATNGACCAATGGgntttct ]
[+] EMBL OSC103461 [ ccgcccacGCGTC CGGCGATGTGCGAGGAGGCGACGCGGA NAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCA CCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGNCGGCGCCACGGTCGTNAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGG ]
[+] EMBL CF325852 [ GTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCA ]
[+] EMBL OS38082 [ CTCAATGAACGAATTGGTTGACCTCTNGGAGAAAANNATAAATAAATTCCTGAACAAGATATATATCACAGAAGAA NACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGG ACTCAATTGTATCCTCATGTAAATTATACCACAGTTGATTGTTATTTAGATAAAATGG CTAGAAgta ]
[+] EMBL BI805185 [ GCACC TTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACC AACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCCCAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTGTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAAC ATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGC AAATGAC ATCAAaa ]
[+] EMBL AU092057 [ AAGATGGATTTGATATTTCTATATTCAACATTTATTAAGGGTGACCACACATATTTTGANNTTGACTCGAGANAGGACGGAACTNAATTGTNTCCTCATGTNAATTATACCACAGTGGATGGTTATTTNGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTANTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGNTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCNATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAAa ]
[+] EMBL AU165475 [ TTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACANTCAAGTCTTAGTTTGTATGTTCAATTAATCTCATTCAATAATATGATCTTTTTTGGGTGTTCCCTG]
consensusID : consensus_13639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 373 fasta sequence
[AAACATTGGNAGATGCACCATTNCCCTTTGAAGNTGGATTTGATATTTATATATTCAACATTTATTAAGGGTGNCCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTANCCTCATGTAAATTATNCCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99550 [AAACATTGGNAGATGCACCATTNCCCTTTGAAGNTGGATTTGATATTTATATATTCAACATTTATTAAGGGTGNCCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTANCCTCATGTAAATTATNCCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094680 [ aacCATTTATNAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13639#0 TCCGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGG 60
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 AGCAGGGTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGC 120
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 CTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGAC 180
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 TCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTAC 240
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 CCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAG 300
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 CAAGCGCTCGAGCAGAAGCTTCTGATTCGGGCTATTAAGGATGCTGGGTGCGTGAAGAGA 360
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 TTTATTCCAGCGGAATATGGACTTGATCCCACAAAGGTTCAAATTTGTGGCATGGACCAT 420
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 GGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCAC 480
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 ACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGA 540
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 CTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTT 600
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 TTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACA 660
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 TTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTT 720
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 GACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAA 780
consensus_13639#1 ------------------------------------------------------------
consensus_13639#0 CTCCTGAAAAACATTG-AAGATGCACCATTGCCCTT-GAAGATGGATTTGATATTTATAT 838
consensus_13639#1 --------AAACATTGGNAGATGCACCATTNCCCTTTGAAGNTGGATTTGATATTTATAT 52
******** ************ ***** **** ******************
consensus_13639#0 ATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAA 898
consensus_13639#1 ATTCAACATTTATTAAGGGTGNCCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAA 112
********************* **************************************
consensus_13639#0 CTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTT 958
consensus_13639#1 CTCAATTGTANCCTCATGTAAATTATNCCACAGTGGATGGTTATTTAGATAAATTGGTTT 172
********** *************** *********************************
consensus_13639#0 AGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATAT 1018
consensus_13639#1 AGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATAT 232
************************************************************
consensus_13639#0 TACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATC 1078
consensus_13639#1 TACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATC 292
************************************************************
consensus_13639#0 TTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAT 1138
consensus_13639#1 TTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAA 352
***********************************************************
consensus_13639#0 CAAGTCTTAGTTTGTATGTTCAATTAATCTCATTCAATAATATGATCTTTTTTGGGTGTT 1198
consensus_13639#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 373
** * *
consensus_13639#0 CCCTG 1203
consensus_13639#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||