Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13645 cluster # 13645       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13645#0 length = 1145 sequences # 10  
consensus_13645#1 length = 384 sequences # 1  
consensus_13645#2 length = 334 sequences # 1  
consensus_13645#3 length = 323 sequences # 1  

consensusID : consensus_13645#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1145
fasta sequence
                              [ATCCACTACTTCTTGCTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCGCCGTTGCCGCCGACGGCGACGCCGCGGCGGCGGCGTCC-A-T--GGTC-GTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGGCAAGTCTGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAGCAATGCTTCGCGCAGCTGCACAGCGCGGCGTCGAACCAGCCATGCCCCGGGCAGGAGCCGTCGTGGATCGTCAACGCCGCCGCCGACAAGAAGAAGACCTTCGTCGCCGTCGCCGGCGACACCCACTTCCCGTCGTCGGAGTGCGCGTCGGCGTTCCTCTGCGACCCGTT-CCACAAGAAGGACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCACAAGCCGCCG-CCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACG-CCGGCGTACTCTCACCCGACG-CCGGTGTACAAGCAGCCGCTGCCGACG-CCGTCGCCG-CCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATG-CAGGACGACGCGGAGGCTGA-CCCCGAGCTGTT-CAAGAAGCTGCTG-CC-ATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGT-CGCCGGCTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTTTTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC--TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCTCTAAAAAATGATTACATGTTTGCCGGATTGAATGGATACCTAGCTACTAGCTTAGCTAGCTTAAATTAAAAA]

[+] EMBL AK099480             [ATCCACTACTTCTTGCTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCGCCGTTGCCGCCGACGGCGACGCCGCGGCGGCGGCGTCC A T  GGTC GTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGGCAAGTCTGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAGCAATGCTTCGCGCAGCTGCACAGCGCGGCGTCGAACCAGCCATGCCCCGGGCAGGAGCCGTCGTGGATCGTCAACGCCGCCGCCGACAAGAAGAAGACCTTCGTCGCCGTCGCCGGCGACACCCACTTCCCGTCGTCGGAGTGCGCGTCGGCGTTCCTCTGCGACCCGTT CCACAAGAAGGACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCACAAGCCGCCG CCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACG CCGGCGTACTCTCACCCGACG CCGGTGTACAAGCAGCCGCTGCCGACG CCGTCGCCG CCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATG CAGGACGACGCGGAGGCTGA CCCCGAGCTGTT CAAGAAGCTGCTG CC ATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGT CGCCGGCTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTTTTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC  TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGC                                                                                 ]
[+] EMBL CF325651             [             gGCTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCGCCGTTGCCGCCGACGGCGACGCCGCGGCGGCGGCGTCC A T  GGTC GTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK059665             [               CTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCGCCGTTGCCGCCGACGGCGACGCCGCGGCGGCGGCGTCC A T  GGTC GTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGGCAAGTCTGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAGCAATGCTTCGCGCAGCTGCACAGCGCGGCGTCGAACCAGCCATGCCCCGGGCAGGAGCCGTCGTGGATCGTCAACGCCGCCGCCGACAAGAAGAAGACCTTCGTCGCCGTCGCCGGCGACACCCACTTCCCGTCGTCGGAGTGCGCGTCGGCGTTCCTCTGCGACCCGTT CCACAAGAAGGACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCACAAGCCGCCG CCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACG CCGGCGTACTCTCACCCGACG CCGGTGTACAAGCAGCCGCTGCCGACG CCGTCGCCG CCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATG CAGGACGACGCGGAGGCTGA CCCCGAGCTGTT CAAGAAGCTGCTG CC ATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGT CGCCGGCTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTTTTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC  TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCT                                                                                ]
[+] EMBL OSC556               [                    CATCATATATCTCTTGTGAGCTTCA NAATGGGGGCTCTG CAAGGGCTCTAGTCCTCGGCGTTTGCGCC CNGTCTTGCTGGTGAACGTGCTCGCCGTTGCCGCCGACGG AACGCC    C GNGNCGTCCNANTNGGGTCGGTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGC ATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACC GCGAGGTCGGCAAGTCTGGCGCGTTCG CGTGCCCCTCGCGGCGGACCTNCTCGGCGACGACGGCGAGCTGAGGCAGCAATc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BI305444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTCGTCGGAGTGCGCGTCGGCGTTCCTCTGCGACCCGTT CCACAAGAAGGACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCACAAGCCGCCG CTGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACG CCGGCGTACTCTCACCCGACG CCGGTGTACAAGCAGCCGCTGCCGACG CCGTCGCCG CCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATG CAGGACGACGCGGAGGCTGA CCCCGAGCTGTT CAAGAAGCTGCTG CC ATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGT CGCCGGCTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTATGTGTTTTTCACATCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC  TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCTCTATGATGTGATTACATGTTTGCCGGATTGAATGGATACCTAGCTACTAGCTTAGCTAGCTTA         ]
[+] EMBL AU094417             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCGGAGTGCGCGTCGGCGTTCCTNTGCGACCCGTT CCACAAGAAGGACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCACAAGCCGCCG CCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACG CCGGCGTACTNTCACCCGACG CCGGTGTACAAGCAGCCGCTGCCGACG CCGTCGCCG CCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATG CAGGACGACGCGGAGGCTGA CCCCGAGCTGTT CAAGAAGCTGCTG CC ATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGT   NCGCNTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTTTTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC  TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCAAAAAAAAAaaaa                                                            ]
[+] EMBL C99251               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCTTTCCCACAAGAAGGACTTCTTCTTCCACTACAAGAACCCNTCGCCGCCAGCCCCGGCGGCNTACCACAAGCCGCCGCCCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCNTACCCGACGCCCGGCGTACTCTCACCCGACGNCCGGTGTACAAGCAGCCGCTGNCGACG CCGTCGCCG CCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATGNCAGGACGACGCGGAGGCTGA CCCCGAGCTNTTACAAGAAGCTGCTGCCC ATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGTNCGCC  NTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTTTTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC  TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCTCTAAAAAA                                                                ]
[+] EMBL AU094366             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTACTCCTACCCGACG CCGGCGTACTCTCACCCGACG CCGGTGTACAAGCAGCCGCTGCCGACG CCGTCGCCGCCCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGNCGATG CAGGACGACGCGGAGGCTGACCCCCGAGCTGTT GAAGAAGCTGCTG CC ATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGT   CCGCNTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTTTTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC  TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCTCTAAAAA                                                                 ]
[+] EMBL BI797955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTACTCTCACCCGACG CCGGTGTACAA CAGCCGCTGCCGACGTCCGTCGCCG CCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATG CAGGACGACGCGGAGGCTGA CCCCGAGCTGTT CAAGAAGCTGCTG CCAATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCTGCGGAGGTGGAGGCAAAGCCATAGATGGT CGCCGGCTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTG TTTTCACATCGGCTACTCGAGCTAGTTATTTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC  TTTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCTCTATGATGTGATTACATGTTT CCGGATTGAATGGATACCTAGCTACTAGCTTAGCTAGCTTTAATTAAAAA]
[+] EMBL BI799545             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTCCTCAAGTTCCCC AGCTCCCGCCTGCGGAGGTGGAGGC AAGCCATAGATGGT CGCCGGCTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTG TTTTCACATCGGCTACTCGAGCTAGTTATTTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTCTGTGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCTCTAAAAAAaaaa                                                            ]


>consensus_13645#0 ATCCACTACTTCTTGCTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTG CCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCGCCGTT GCCGCCGACGGCGACGCCGCGGCGGCGGCGTCCATGGTCGTCGGATTGGCCAAGTGCGCC GACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGATC AAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGGCAAGTCT GGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAG CAATGCTTCGCGCAGCTGCACAGCGCGGCGTCGAACCAGCCATGCCCCGGGCAGGAGCCG TCGTGGATCGTCAACGCCGCCGCCGACAAGAAGAAGACCTTCGTCGCCGTCGCCGGCGAC ACCCACTTCCCGTCGTCGGAGTGCGCGTCGGCGTTCCTCTGCGACCCGTTCCACAAGAAG GACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCACAAGCCG CCGCCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACGCCGGCGTACTCT CACCCGACGCCGGTGTACAAGCAGCCGCTGCCGACGCCGTCGCCGCCGATCTACCACCCG CCGGCGGAGGAGAAGAAGGTGGCGATGCAGGACGACGCGGAGGCTGACCCCGAGCTGTTC AAGAAGCTGCTGCCATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCGCCT GTGGAGGTGGAGGCAAAGCCATAGATGGTCGCCGGCTTCGCCGCGGCGCCATGATCGATC GATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTT TTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAGCTTGGTC TGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCTCTAAAAA ATGATTACATGTTTGCCGGATTGAATGGATACCTAGCTACTAGCTTAGCTAGCTTAAATT AAAAA



consensusID : consensus_13645#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence
                              [GGACGAGAACGCGTGGGTGACTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCGCCGTTGCCGCCGACGGGACGCCGCGGCGCGGGTCCATGGTCGTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGGCAATCTGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAGCAATGCTTCGCGCAGTGCACAAC]

[+] EMBL C99250               [GGACGAGAACGCGTGGGTGACTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCGCCGTTGCCGCCGACGGGACGCCGCGGCGCGGGTCCATGGTCGTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGGCAATCTGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAGCAATGCTTCGCGCAGTGCACAAC]


>consensus_13645#1 GGACGAGAACGCGTGGGTGACTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGGG CTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTCG CCGTTGCCGCCGACGGGACGCCGCGGCGCGGGTCCATGGTCGTCGGATTGGCCAAGTGCG CCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCGA TCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGGCAATC TGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCA GCAATGCTTCGCGCAGTGCACAAC



consensusID : consensus_13645#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence
                              [ANAATAGNGGCTCTGCATNGGNTCTAGTCCTCAGCGTTTGCGCACGNTCTTGCTGGTGAACGTNCTCGCCGTTNCCGCCGACGNNCGCCCGGACGTCCANTGNGGTNCGATCGGANTTGGCCAAGTNCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGCGAGGTCGGCAAGTCTGGCGCGTTCGCGTGCCCCTNNCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAGCAATCTTCGCGCAGTTCACAGNCGGC]

[+] EMBL OSC185               [ANAATAGNGGCTCTGCATNGGNTCTAGTCCTCAGCGTTTGCGCACGNTCTTGCTGGTGAACGTNCTCGCCGTTNCCGCCGACGNNCGCCCGGACGTCCANTGNGGTNCGATCGGANTTGGCCAAGTNCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGCGAGGTCGGCAAGTCTGGCGCGTTCGCGTGCCCCTNNCGGCGGACCTCCTCGGCGACGACGGCGAGCTGAGGCAGCAATCTTCGCGCAGTTCACAGNCGGC]


>consensus_13645#2 ANAATAGNGGCTCTGCATNGGNTCTAGTCCTCAGCGTTTGCGCACGNTCTTGCTGGTGAA CGTNCTCGCCGTTNCCGCCGACGNNCGCCCGGACGTCCANTGNGGTNCGATCGGANTTGG CCAAGTNCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTC GCGTGGCATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGCGAGGTC GGCAAGTCTGGCGCGTTCGCGTGCCCCTNNCGGCGGACCTCCTCGGCGACGACGGCGAGC TGAGGCAGCAATCTTCGCGCAGTTCACAGNCGGC



consensusID : consensus_13645#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [ANCNGNTGNNNNCNNTNGANTCATNATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCAAGGGCTCTAGTCCTCGGCGTTTGCGCCCGGTCTTGCTGGTGAACGTGCTCGCCGTTNCCGCCGACGANCGCCCGCGNCGTCCAGTNGGGTCNGTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGCGAGGTCGGCAAGTCTTGCGCGTTCGCGTNCCCCTTGGCGGCGGA]

[+] EMBL OSC504               [ANCNGNTGNNNNCNNTNGANTCATNATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCTGCAAGGGCTCTAGTCCTCGGCGTTTGCGCCCGGTCTTGCTGGTGAACGTGCTCGCCGTTNCCGCCGACGANCGCCCGCGNCGTCCAGTNGGGTCNGTCGGATTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGCGAGGTCGGCAAGTCTTGCGCGTTCGCGTNCCCCTTGGCGGCGGA]


>consensus_13645#3 ANCNGNTGNNNNCNNTNGANTCATNATATATCTCTTGTGAGCTTCAGCAATGGGGGCTCT GCAAGGGCTCTAGTCCTCGGCGTTTGCGCCCGGTCTTGCTGGTGAACGTGCTCGCCGTTN CCGCCGACGANCGCCCGCGNCGTCCAGTNGGGTCNGTCGGATTGGCCAAGTGCGCCGACT GCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGTGGCATCAAGTG CAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGCGAGGTCGGCAAGTCTTGCGCG TTCGCGTNCCCCTTGGCGGCGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13645#1      GGACGAGAACGCGTGGGTGACTGAT-CATCATATATCTCTTGTGAGCTTCAGCAATGGGG 59
consensus_13645#3      -----ANCNGNTGNNNNCNNTNGANTCATNATATATCTCTTGTGAGCTTCAGCAATGGGG 55
consensus_13645#0      ------ATCCACTACTTCTTGCTGATCATCATATATCTCTTGTGAGCTTCAGCAATGGGG 54
consensus_13645#2      ---------------------------------------------------ANAATAGNG 9
                                                                            *** * *

consensus_13645#1      GCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTC 119
consensus_13645#3      GCTCTGC-AAGGGCTCTAGTCCTCGGCGTTTGCGCC-CGGTCTTGCTGGTGAACGTGCTC 113
consensus_13645#0      GCTCTGCCAAGGGCTCTAGTCCTCGGCGTTTGCGCCGCCGTCTTGCTGGTGAACGTGCTC 114
consensus_13645#2      GCTCTGC-ATNGGNTCTAGTCCTCAGCGTTTGCGC-ACGNTCTTGCTGGTGAACGTNCTC 67
                       ******* *  ** ********** **********  *  **************** ***

consensus_13645#1      GCCGTTGCCGCCGACGGG--ACGCCGCGGCGCGGGTCCATGGTCG-TCGGA-TTGGCCAA 175
consensus_13645#3      GCCGTTNCCGCCGACGAN--CGCCCGCGNCGTCCAGTNGGGTCNG-TCGGA-TTGGCCAA 169
consensus_13645#0      GCCGTTGCCGCCGACGGCGACGCCGC-GGCGGCGGCGTCCATGGTCGTCGGATTGGCCAA 173
consensus_13645#2      GCCGTTNCCGCCGACGNN--CGCCCG-GACGTCCANTGNGGTNCGATCGGANTTGGCCAA 124
                       ****** *********       *   * **                  *  ********

consensus_13645#1      GTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGT 235
consensus_13645#3      GTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGT 229
consensus_13645#0      GTGCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGT 233
consensus_13645#2      GTNCGCCGACTGCACCAGGAAGAACATGAAAGCTGAGGCCGTTTTCAAGGGTGTTCGCGT 184
                       ** *********************************************************

consensus_13645#1      GGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGG 295
consensus_13645#3      GGC-ATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCG-CGAGGTCGG 287
consensus_13645#0      GGCGATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCGGCGAGGTCGG 293
consensus_13645#2      GGC-ATCAAGTGCAAGAACAGCAACGGCGAGTACGAGACGAAGGCCACCG-CGAGGTCGG 242
                       *** ********************************************** *********

consensus_13645#1      CAA-TCTGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCT 354
consensus_13645#3      CAAGTCTTGCGCGTTCGCGTNCCCCTTGGCGGCGGA------------------------ 323
consensus_13645#0      CAAGTCTGGCGCGTTCGCCGTGCCCCTCGCGGCGGACCTCCTCGGCGACGACGGCGAGCT 353
consensus_13645#2      CAAGTCTGGCGCGTTCGC-GTGCCCCTNNCGGCGGACCTCCTCGGCGACGACGGCGAGCT 301
                       *** *** **********    *** *  *******                        

consensus_13645#1      GAGGCAGCAATGCTTCGCGCAGTGCACAAC------------------------------ 384
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      GAGGCAGCAATGCTTCGCGCAGCTGCACAGCGCGGCGTCGAACCAGCCATGCCCCGGGCA 413
consensus_13645#2      GAGGCAGCAAT-CTTCGCGCAGTT-CACAGN-CGGC------------------------ 334
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      GGAGCCGTCGTGGATCGTCAACGCCGCCGCCGACAAGAAGAAGACCTTCGTCGCCGTCGC 473
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      CGGCGACACCCACTTCCCGTCGTCGGAGTGCGCGTCGGCGTTCCTCTGCGACCCGTTCCA 533
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      CAAGAAGGACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCA 593
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      CAAGCCGCCGCCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACGCCGGC 653
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      GTACTCTCACCCGACGCCGGTGTACAAGCAGCCGCTGCCGACGCCGTCGCCGCCGATCTA 713
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      CCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATGCAGGACGACGCGGAGGCTGACCCCGA 773
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      GCTGTTCAAGAAGCTGCTGCCATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCT 833
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      CCCGCCTGTGGAGGTGGAGGCAAAGCCATAGATGGTCGCCGGCTTCGCCGCGGCGCCATG 893
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      ATCGATCGATCGAAGCGAGGAAACATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTG 953
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      TGTGTTTTTCACACCGGCTACTCGAGCTAGTTAATTACTGCCCTTCTAGCGTTGTTGAAG 1013
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      CTTGGTCTGTTGCCTGCCTGCTAGCTTAACTATTCAGATATAAATAAAAGCTTCTGTTCT 1073
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------------------------------------------------------
consensus_13645#3      ------------------------------------------------------------
consensus_13645#0      CTAAAAAATGATTACATGTTTGCCGGATTGAATGGATACCTAGCTACTAGCTTAGCTAGC 1133
consensus_13645#2      ------------------------------------------------------------
                                                                                   

consensus_13645#1      ------------
consensus_13645#3      ------------
consensus_13645#0      TTAAATTAAAAA 1145
consensus_13645#2      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)