These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [GGTAAAGATCAGCATTTGCAGCATTCCCATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTTCGCTCTCTTTCACCAGCGCGAGGATCACGCAATCGAGTTTGCCGCTGTCCAGTTGCGCCAGTAACTGGTGGGTCTGTGCTTCATGCAGATACATTTCCAGCTTTGGAAAGGTCTGGTGCAGCATAGGGATAATATGCGGTAGCAGGTACGGTCCAACTGTGGGAATCAAACCAATGTGCAGCGGTCCGGACATCGTCTCGCCCTGCTGGCTTGCCATCTCTTTAAGGACTTTCACCTCACGCAGCACGGTACGCGCCTGATCCACCAGCAGCATTCCCGCCTGGGTGAACAACACTTTACGGCTGGTCCGCTCCAGCAACATCACGCCCAGCTCATCTTCCAGCTTACGAATTTGCCCGCTAAGCGTCGGCTGGCTAACGTGGCAGGAATCTGCCGC] [+] EMBL CF306673 [GGTAAAGATCAGCATTTGCAGCATTCCCATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTTCGCTCTCTTTCACCAGCGCGAGGATCACGCAATCGAGTTTGCCGCTGTCCAGTTGCGCCAGTAACTGGTGGGTCTGTGCTTCATGCAGATACATTTCCAGCTTTGGAAAGGTCTGGTGCAGCATAGGGATAATATGCGGTAGCAGGTACGGTCCAACTGTGGGAATCAAACCAATGTGCAGCGGTCCGGACATCGTCTCGCCCTGCTGGCTTGCCATCTCTTTAAGGACTTTCACCTCACGCAGCACGGTACGCGCCTGATCCACCAGCAGCATTCCCGCCTGGGTGAACAACACTTTACGGCTGGTCCGCTCCAGCAACATCACGCCCAGCTCATCTTCCAGCTTACGAATTTGCCCGCTAAGCGTCGGCTGGCTAACGTGGCAGGAATCTGCCGC] consensusID : consensus_1365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [CGGCATATAAACAACCCCATCGCGTTTGCGCTCCGGCGGCACACCCAGCGCTGGCAGTAAAGTGATCCCGCTACCTGCCGCCACCATGTTGCGCAGAGTTTCCAGGCTGGTCGCGCGGAAGTGTGTATCTTCATCCGCCCCGGCTTCAAAACAGAAACCCATTGCCTGATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTCCG] [+] EMBL CB640131 [CGGCATATAAACAACCCCATCGCGTTTGCGCTCCGGCGGCACACCCAGCGCTGGCAGTAAAGTGATCCCGCTACCTGCCGCCACCATGTTGCGCAGAGTTTCCAGGCTGGTCGCGCGGAAGTGTGTATCTTCATCCGCCCCGGCTTCAAAACAGAAACCCATTGCCTGATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1365#0 GGTAAAGATCAGCATTTGCAGCATTCCCATCGCGCAAACAGTGACCATCTTCCAGCATCA 60 consensus_1365#1 ------------------------------------------------------------ consensus_1365#0 GCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGAT 120 consensus_1365#1 ------------------------------------------------------------ consensus_1365#0 CTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTTCGC 180 consensus_1365#1 ----------------------CGGCATAT-AAACAACCCCATCGCGTTTG-CGCTCCGG 36 *** ** ******* ** * * *** ** consensus_1365#0 TCTCTTTCACCAGCGCGAGGA-TCACGCAATCGAGTT---TGCCGCTGTCCAGTTGCGCC 236 consensus_1365#1 CGGCACAC-CCAGCGCTGGCAGTAAAGTGATCCCGCTACCTGCCGCCACCATGTTGCGCA 95 * * ******* * * * * * *** * * ****** * ******* consensus_1365#0 AGTAACTGGTGGGTCTGTGCTTCATGCAGATACATTTCCAGCTTTGGAAAGGTCTGGTGC 296 consensus_1365#1 G--AGTTTCCAGGCTGGT----CGCGCGGAAGTGTGT--ATCTTC------ATCCGCCCC 141 * * ** ** * ** ** * * * *** ** * * consensus_1365#0 AGCATAGGGATAATATGCGGTAGCAGGTACGGTCCAACTGTGGGAATCAAACCAATGTGC 356 consensus_1365#1 GGCTTCAAAACAGAAACCCATTGCCTGATCGCGCAAACAGTGACCATCTT-CCAGCAT-C 199 ** * * * * * * ** * ** * *** *** *** *** * * consensus_1365#0 AGCGGTCCGGACATCGTCTCGCCCTGCTGGCTTGCCATCTCTTTAAGGACTTTCACCTCA 416 consensus_1365#1 AGCAGT----------TTTTCCCCTGCCAGATCGGC-CATCGGTACGCATTCGCGGTTCG 248 *** ** * * ****** * * * * ** ** * * * * ** consensus_1365#0 CGCAGCACGGTACGCGCCTGATCCACCAGCAGCATTCCCGCCTGGGTGAACAACACTTTA 476 consensus_1365#1 CCCA-CGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCA 307 * ** * * * * * ****** **** * * * *** ***** * consensus_1365#0 -CGGCTGGTCCGCTCCAGCAACATCACGCCCAGCTCATCTTCCAGCTTACGAATTTGCCC 535 consensus_1365#1 ATGAATGCTCCG------------------------------------------------ 319 * ** **** consensus_1365#0 GCTAAGCGTCGGCTGGCTAACGTGGCAGGAATCTGCCGC 574 consensus_1365#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||