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Oryza sativa
cluster # 13650 cluster # 13650       Sequences # 13       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13650#0 length = 1808 sequences # 7  
 consensus_13650#1 length = 741 sequences # 4  
consensus_13650#2 length = 380 sequences # 2  
consensusID : consensus_13650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1808
fasta sequence 
                              [CGCCTTCTTGAACAGTTTCCCCAATTTTCTGACCGCCGCTTTGTTTGCAGCTCGCGCTTCCTGTCGACATGGCGAAGAAATCCAAGCTGAAGAAGGAGGGATCCAGTACGACGAGGAATCCGGCGGCCGAGCTCACCGACGACCTCATCGTCGACATCCTCTCCCGCCTCCCCGCAAGTCGGTCTGCCGATGCAAGTGCGTATCCAGGCGGTGGCGCGGCCTCATCTCCGACCCCGACCACCGCAAGAAGCTCCCCCAAACCCTCGCCGGCTTCTTCTACCGCAGCGAGAACGAATCACGCTGCCCCCAAGCTAGCGCGCCATTTCGTCAATGTCACCGGCAGAGGCCGGCCTCTCATCTGCCCAACCATCTCCTTCCTGCCTCGCTTCGACTTGGAGGGCATGAGGATGGTGGACTGCTGCGGCGGCCTCCTCCTCTTCCGCTGCTTCATGAGCTCGGACGAATTCTGCTACCTCGTGTGCAATCCCTCCACCGAGGAATGGGTTGCCTTCCCAGATTCCGGCTACAACCCCGAGTGGCAGTTCTTCACCCATTTGGGGTTTGATCCTGCCGTCTCCTCGCACTTCCATGTCTTTGAGTTTGTGATGGGTGATTGTGGATTTGTGGAAGGGGTGGAGATCTACTCTTCGGAAACCGGATTATGGAATTTCATGGAAAGTGAATGGGACCCTGAAACCACCGTATATGATCGCACAAGGACCTTTTTCAATGGCATGCTGCATTTAGTTGAAGAGGGGATTGCGATATTATCAGTAGATGTGGAAGGGGAGATATGGCAGAGCATTGGCGCCCCGAGACCGGAACTAGAAAATGTGGAAGATATGTTTGCTTTGGTGTCTTGTTTCATCGGTCAATCCCAAGGGAAATTGTGCTACCTCAGTGCATATGACACTGTCCCTTGGAACCTGTCAATATGGGTTCTTGAGGATTATTCCAAGGATGAATGGACATTGAAGCATAAGCTGACTACCGAACAGCTGTCTGAGAAGATAAACTGCAAGTGCAAAACCGACTTCGACAAGGCTTGGTACTACCACGTGGTCGCAGTTCATTCAGAGTGCAATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATAAACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAAGCAGAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTAGTCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCGTGAGTGCTTGATATTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACTTGTCTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGGATGTAAAACAGTGGTTCTGTTTCGTGGAATTTGAGTTGTATCAGTTATGATGACATTACTTGCTTGTCCTTTTGTGCAGTATCAGGTCTGTTGCTTGCTAAAATCATATGACCAAAATATGCAAGTTT]

[+] EMBL AK068467             [CGCCTTCTTGAACAGTTTCCCCAATTTTCTGACCGCCGCTTTGTTTGCAGCTCGCGCTTCCTGTCGACATGGCGAAGAAATCCAAGCTGAAGAAGGAGGGATCCAGTACGACGAGGAATCCGGCGGCCGAGCTCACCGACGACCTCATCGTCGACATCCTCTCCCGCCTCCCCGCAAGTCGGTCTGCCGATGCAAGTGCGTATCCAGGCGGTGGCGCGGCCTCATCTCCGACCCCGACCACCGCAAGAAGCTCCCCCAAACCCTCGCCGGCTTCTTCTACCGCAGCGAGAACGAATCACGCTGCCCCCAAGCTAGCGCGCCATTTCGTCAATGTCACCGGCAGAGGCCGGCCTCTCATCTGCCCAACCATCTCCTTCCTGCCTCGCTTCGACTTGGAGGGCATGAGGATGGTGGACTGCTGCGGCGGCCTCCTCCTCTTCCGCTGCTTCATGAGCTCGGACGAATTCTGCTACCTCGTGTGCAATCCCTCCACCGAGGAATGGGTTGCCTTCCCAGATTCCGGCTACAACCCCGAGTGGCAGTTCTTCACCCATTTGGGGTTTGATCCTGCCGTCTCCTCGCACTTCCATGTCTTTGAGTTTGTGATGGGTGATTGTGGATTTGTGGAAGGGGTGGAGATCTACTCTTCGGAAACCGGATTATGGAATTTCATGGAAAGTGAATGGGACCCTGAAACCACCGTATATGATCGCACAAGGACCTTTTTCAATGGCATGCTGCATTTAGTTGAAGAGGGGATTGCGATATTATCAGTAGATGTGGAAGGGGAGATATGGCAGAGCATTGGCGCCCCGAGACCGGAACTAGAAAATGTGGAAGATATGTTTGCTTTGGTGTCTTGTTTCATCGGTCAATCCCAAGGGAAATTGTGCTACCTCAGTGCATATGACACTGTCCCTTGGAACCTGTCAATATGGGTTCTTGAGGATTATTCCAAGGATGAATGGACATTGAAGCATAAGCTGACTACCGAACAGCTGTCTGAGAAGATAAACTGCAAGTGCAAAACCGACTTCGACAAGGCTTGGTACTACCACGTGGTCGCAGTTCATTCAGAGTGCAATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATAAACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAAGCAGAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTAGTCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCGTGAGTGCTTGATATTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACTTGTCTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGGATGTAAAACAGTGGTTCTGTTTCGTGGAATTTGAGTTGTATCAGTTATGATGACATTACTTGCTTGTCCTTTTGTGCAGTATCAGGTCT                                       ]
[+] EMBL AK105962             [        TGAACAGTTTCCCCAATTTTCTGACCGCCGCTTTGTTTGCAGCTCGCGCTTCCTGTCGACATGGCGAAGAAATCCAAGCTGAAGAAGGAGGGATCCAGTACGACGAGGAATCCGGCGGCCGAGCTCACCTACGACCTCATCGTCGACATCCTCTCCCGCCTCCCCGCAAGTCGGTCTGCCGATGCAAGTGCGTATCCAGGCGGTGGCGCGGCCTCATCTCCGACCCCGACCACCGCAAGAAGCTCCCCCAAACCCTCGCCGGCTTCTTCTACCGCAGCGAGAACGAATCACGCTGCCCCCAAGCTAGCGCGCCATTTCGTCAATGTCACCGGCAGAGGCCGGCCTCTCATCTGCCCAACCATCTCCTTCCTGCCTCGCTTCGACTTGGAGGGCATGAGGATGGTGGACTGCTGCGGCGGCCTCCTCCTCTTCCGCTGCTTCATGAGCTCGGACGAATTCTGCTACCTCGTGTGCAATCCCTCCACCGAGGAATGGGTTGCCTTCCCAGATTCCGGCTACAACCCCGAGTGGCAGTTCTTCACCCATTTGGGGTTTGATCCTGCCGTCTCCTCGCACTTCCATGTCTTTGAGTTTGTGATGGGTGATTGTGGATTTGTGGAAGGGGTGGAGATCTACTCTTCGGAAACCGGATTATGGAATTTCATGGAAAGTGAATGGGACCCTGAAACCACCGTATATGATCGCACAAGGACCTTTTTCAATGGCATGCTGCATTTAGTTGAAGAGGGGATTGCGATATTATCAGTAGATGTGGAAGGGGAGATATGGCAGAGCATTGGCGCCCCGAGACCGGAACTAGAAAATGTGGAAGATATGTTTGCTTTGGTGTCTTGTTTCATCGGTCAATCCCAAGGGAAATTGTGCTACCTCAGTGCATATGACACTGTCCCTTGGAACCTGTCAATATGGGTTCTTGAGGATTATTCCAAGGATGAATGGACATTGAAGCATAAGCTGACTACCGAACAGCTGTCTGAGAAGATAAACTGCAAGTGCAAAACCGACTTCGACAAGGCTTGGTACTACCACGTGGTCGCAGTTCATTCAGAGTGCAATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATAAACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAAGCAGAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTAGTCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCGTGAGTGCTTGATATTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACTTGTCTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGGATGTAAAACAGTGGTTC                                                                                                               ]
[+] EMBL CB651471             [                            CTGACCGCCGCTTTGTTTGCAGCTCGCGCTTCCTGTCGACATGGCGAAGAAATCCAAGCTGAAGAAGGAGGGATCCAGTACGACGAGGAATCCGGCGGCCGAGCTCACCGACGACCTCATCGTCGACATCCTCTCCCGCCTCCCCGCAAGTCGGTCTGCCGATGCAAGTGCGTATCCAGGCGGTGGCGCGGCCTCATCTCCGACCCCGACCACCGCAAGAAGCTCCCCCAAACCCTCGCCGGCTTCTTCTACCGCAGCGAGAACGAATCACGCTGCCCCCAAGCTAGCGCGCCATTTCGTCAATGTCACCGGCAGAGGCCGGCCTCTCATCTGCCCAACCATCTCCTTCCTGCCTCGCTTCGACTTGGAGGGCATGAGGATGGTGGACTGCTGCGGCGGCCTCCTCCTCTTCCGCTGCTTCATGAGCTCGGACGAATTCTGCTACCTCGTGTGCAATCCCTCCACCGAGGAATGGGTTGCCTTCCCAGATTCCGGCTACAACCCCGAGTGGCAGTTCTTCACCCATTTGGGGTTTGATCCTGCCGTCTCCTCGCACTTCCATGTCTTTGAGTTTGTGATGGGTGATTGTGGATTTGTGGAAGGGGTGGAGATCTACTCTTCGGAAACCGGATTATGGAATTTCATGGAAAGTGAATGGGACCCTGAAACCACCGTATATGATCGCACAAGGACCTTTTTCAATGGCATGCTGCATTTAGTTGAAGAGGGGATTGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA766129             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATCCTGCCGTCTCCTCGCACTTCCATGTCTTTGAGTTTGTGATGGATGATTGTGGATTTGTGGAAGGGGTGGAGATCTACTCTTCGGAAACCGGATTATGGAATTTCATGGAAAGTGAATGGGACCCTGAAACCACCGTATATGATCGCACAAGGACCTTTTTCAATGGCATGCTGCATTTAGTTGAAGAGGGGATTGCGATATTATCAGTAGATGTGGAAGGGGAGATATGGCAGAGCATTGGCGCCCCGAGACCGGAACTAGAAAATGTGGAAGATATGTTTGCTTTGGTGTCTTGTTTCATCGGTCAATCCCAAGGGAAATTGTGCTACCTCAGTGCATATGACACTGTCCCTTGGAACCTGTCAATATGGGTTCTAGAGGATTATTCCAAGGATGAATGCACATTGAAGCATAAGCTGACTACCGAACAGCTGTCTGAGAAGATAAACTGCAAGTGCAAAACCGACTTCGACAAGGCTTGGTACTACCACGTGGTCGCAGTTCATTCAGAGTGCAATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATAAACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGGTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTACGGNTCTGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB662719             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGATTATTCCAAGGATGAATGGACATTGAAGCATAAGCTGACTACCGAACAGCTGTCTGAGAAGATAAACTGCAAGTGCAAAACCGACTTCGACAAGGCTTGGTACTACCACGTGGTCGCAGTTCATTCAGAGTGCAATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATAAACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAAGCAGAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTAGTCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCGTGAGTGCTTGATATTACTAATCCAGTCCCGTTCATGGTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACTTGTCTCTCTAGATCCGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCGGGATGTAAACCAGTGGTTCTGTTTCGTGGAAaaaaaaaag                                                                                          ]
[-] EMBL CB651472             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGAGTGCAATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATAAACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAAGCAGAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTAGTCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCGTGAGTGCTTGATATTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACTTGTCTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGGATGTAAAACAGTGGTTCTGTTTCGTGGAATTTGAGTTGTATCAGTTAT                                                                                ]
[+] EMBL CA766415             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGCCTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCNNTACGAGGAGCTCAANCCNAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTAGNCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCTTGAGTGCTTGATATTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACTTGTCTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGGATGTAAAACAGTGGTTCTGTTTCGTGGAATTTGAGTTGTATCAGTTATGATGACATTACTTGCTTGTCCTTTTGTGCAGTATCAGGTCTGTTGCTTGCTAAAATCATATGACCAAAATATGCAAGTTT]




>consensus_13650#0
CGCCTTCTTGAACAGTTTCCCCAATTTTCTGACCGCCGCTTTGTTTGCAGCTCGCGCTTC
CTGTCGACATGGCGAAGAAATCCAAGCTGAAGAAGGAGGGATCCAGTACGACGAGGAATC
CGGCGGCCGAGCTCACCGACGACCTCATCGTCGACATCCTCTCCCGCCTCCCCGCAAGTC
GGTCTGCCGATGCAAGTGCGTATCCAGGCGGTGGCGCGGCCTCATCTCCGACCCCGACCA
CCGCAAGAAGCTCCCCCAAACCCTCGCCGGCTTCTTCTACCGCAGCGAGAACGAATCACG
CTGCCCCCAAGCTAGCGCGCCATTTCGTCAATGTCACCGGCAGAGGCCGGCCTCTCATCT
GCCCAACCATCTCCTTCCTGCCTCGCTTCGACTTGGAGGGCATGAGGATGGTGGACTGCT
GCGGCGGCCTCCTCCTCTTCCGCTGCTTCATGAGCTCGGACGAATTCTGCTACCTCGTGT
GCAATCCCTCCACCGAGGAATGGGTTGCCTTCCCAGATTCCGGCTACAACCCCGAGTGGC
AGTTCTTCACCCATTTGGGGTTTGATCCTGCCGTCTCCTCGCACTTCCATGTCTTTGAGT
TTGTGATGGGTGATTGTGGATTTGTGGAAGGGGTGGAGATCTACTCTTCGGAAACCGGAT
TATGGAATTTCATGGAAAGTGAATGGGACCCTGAAACCACCGTATATGATCGCACAAGGA
CCTTTTTCAATGGCATGCTGCATTTAGTTGAAGAGGGGATTGCGATATTATCAGTAGATG
TGGAAGGGGAGATATGGCAGAGCATTGGCGCCCCGAGACCGGAACTAGAAAATGTGGAAG
ATATGTTTGCTTTGGTGTCTTGTTTCATCGGTCAATCCCAAGGGAAATTGTGCTACCTCA
GTGCATATGACACTGTCCCTTGGAACCTGTCAATATGGGTTCTTGAGGATTATTCCAAGG
ATGAATGGACATTGAAGCATAAGCTGACTACCGAACAGCTGTCTGAGAAGATAAACTGCA
AGTGCAAAACCGACTTCGACAAGGCTTGGTACTACCACGTGGTCGCAGTTCATTCAGAGT
GCAATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATA
AACAATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATG
TTCCACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTA
GTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTAC
GGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAA
GCAGAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGC
TTAGTCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCAT
ATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCGTGAGTGCTTG
ATATTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACT
TGTCTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGG
ATGTAAAACAGTGGTTCTGTTTCGTGGAATTTGAGTTGTATCAGTTATGATGACATTACT
TGCTTGTCCTTTTGTGCAGTATCAGGTCTGTTGCTTGCTAAAATCATATGACCAAAATAT
GCAAGTTT

consensusID : consensus_13650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 741
fasta sequence 
                              [CCTCCCCCTCTAAAACCCCAGCACCCAGAGCCGCCGGCGGCGGCGGCGA-CGGCGACTCGGAAAGGGGATCTCCGGCGACGTCTCGCGGATCTCCGGTTGCGCTTCTTGGCGACATGGCGAAGGGATCCAAGAAGAAGAAGGGATCCAGTGCGACGAGGAATCCGGCGGCCGAGCTCACCGACGACCTCATCGTGGAGATCCTCTCCCGCCTCCCCGCCAAGTCGGTCCGCCGATGCAGGCGCGTATGCAGGCGGTGGCGCCG-CTCATCTCCGATCCCCATCA---CCGCAAGAAGCTCCCCCAAACCCTCGNCGGCTTCTTCCACCTCAGCGTGAACGAATCACGCTTTCCCGTGGAAGCACGCCATTTCGTCAATGTCTCCGGGATAGGGGGACGCCTGCCTCACGTCTGCCCATCCTTCTCCTTCCTGCCTCGCTTTGAGCGCATCAGTATGGTGGACAGCTGCGGCGACCTCCTCCTCTGCCAATGCTTCGAGAGCTCAGATGCATTCCGCTACGTCGTATTCAATCCTTGTACTGAGGAATGGATCGTCTTGCCGGAGTCCGGCTTCCACCCCAAGGACCGGGGGTTCTGCGCCCGCTTGGGATTTGACCCTGATGTCTCCTCGCAATTCCATGTCTTTGAGTTTGTGCCATGTGATGATGTGACTGGGGTGAAGATCTACTCTTCTGAAACCAGAGAATGGAATTACAGGGAAAGTGAATGGTGCACTGATACCGGCAT]

[+] EMBL AK102960             [CCTCCCCCTCTAAAACCCCAGCACCCAGAGCCGCCGGCGGCGGCGGCGA CGGCGACTCGGAAAGGGGATCTCCGGCGACGTCTCGCGGATCTCCGGTTGCGCTTCTTGGCGACATGGCGAAGGGATCCAAGAAGAAGAAGGGATCCAGTGCGACGAGGAATCCGGCGGCCGAGCTCACCGACGACCTCATCGTGGAGATCCTCTCCCGCCTCCCCGCCAAGTCGGTCCGCCGATGCAGGCGCGTATGCAGGCGGTGGCGCCGCCTCATCTCCGATCCCCATCACCGCCGCAAGAAGCTCCCCCAAACCCTCGCCGGCTTCTTCCACCTCAGCGTGAACGAATCACGCTTTCCCGTGGAAGCACGCCATTTCGTCAATGTCTCCGGGATAGGGGGACGCCTGCCTCACGTCTGCCCATCCTTCTCCTTCCTGCCTCGCTTTGAGCGCATCAGTATGGTGGACAGCTGCGGCGACCTCCTCCTCTGCCAATGCTTCGAGAGCTCAGATGCATTCCGCTACGTCGTATTCAATCCTTGTACTGAGGAATGGATCGTCTTGCCGGAGTCCGGCTTCCACCCCAAGGACCGGGGGTTCTGCGCCCGCTTGGGATTTGACCCTGATGTCTCCTCGCAATTCCATGTCTTTGAGTTTGTGCCATGTGATGATGTGACTGGGGTGAAGATCTACTCTTCTGAAACCAGAGAATGGAATTACAGGGAAAGTGAATGGTGCACTGATACCGGCAT]
[+] EMBL C72509               [                            AGCCGCCGGC GCNGTNCNGANCGGCGACTCGGAAAGGGGATCTCCGGCGACGTCTCGCGGATCTCCGGTTGCGCTTCTTGGCGACATGGCGAAGGGATCCAAGAAGAAGAAGGGATCCAGTGCGACGAGGAATCCGGCGGCCGAGCTCACCGACGACCTCATCGTGGAGATCCTCTCCCGCCTCCCCGCCAAGTCGGTCCGCCGATGCAGGCGCGTATGCAGGCGGTGGCG CG CTCATCTCCGATCCCCATCA   CCGCAAGAAGNTCCCCCAAACCCTCGNCGGTTTCTTCCACCTCAGCGTGAACGAATCACGTTTTCCCGTGGAAGCA                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C28665               [                                                                        CCGGCGACGTCTCGCGGATCTCCGGTTGCNCTTCTTGGCGACATGGCGAAGGGATCCAAGAAGAAGAAGGGATCCAGTGCGACGAGGAATCCGGCGGCCGAGCTCACCGACGACCTCATCGTGGAGATCCTCTACCGCCTCCCCGCCAAGTCGGTCCGCCGATGCAGGCGCGTATGCAGGCGGTGGCGCCG CTCATCTCCNATCCCCATCA   CCGCAAGAAGCTCCCCCAAACCCTCGNCGGCTTCTTCCACCTCAGCGTGAACGAATCACGCTTTCCCGTGGAAGCACGCCATTTCGTCAATGTCTNCGGGATAGGGGGACGCCTGCCTCAC                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF312594             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTACTGAGGAATGGATCGTCTTGCCGGAGTCCGGCTTCCACCCCAAGGACCGGGGGTTCTGCGCCCGCTTGGGATTTGACCCTGATGTCTCCTCGCAATTCCATGTCTTTGAGTTTGTGCCATGTGATGATGTGACTGGGGTGAAGATCTACTCTTCTGAAACCAGAGAATGGAATTACAGGGAAAGTGAATGGTGCACTGATACCGGCAT]




>consensus_13650#1
CCTCCCCCTCTAAAACCCCAGCACCCAGAGCCGCCGGCGGCGGCGGCGACGGCGACTCGG
AAAGGGGATCTCCGGCGACGTCTCGCGGATCTCCGGTTGCGCTTCTTGGCGACATGGCGA
AGGGATCCAAGAAGAAGAAGGGATCCAGTGCGACGAGGAATCCGGCGGCCGAGCTCACCG
ACGACCTCATCGTGGAGATCCTCTCCCGCCTCCCCGCCAAGTCGGTCCGCCGATGCAGGC
GCGTATGCAGGCGGTGGCGCCGCTCATCTCCGATCCCCATCACCGCAAGAAGCTCCCCCA
AACCCTCGNCGGCTTCTTCCACCTCAGCGTGAACGAATCACGCTTTCCCGTGGAAGCACG
CCATTTCGTCAATGTCTCCGGGATAGGGGGACGCCTGCCTCACGTCTGCCCATCCTTCTC
CTTCCTGCCTCGCTTTGAGCGCATCAGTATGGTGGACAGCTGCGGCGACCTCCTCCTCTG
CCAATGCTTCGAGAGCTCAGATGCATTCCGCTACGTCGTATTCAATCCTTGTACTGAGGA
ATGGATCGTCTTGCCGGAGTCCGGCTTCCACCCCAAGGACCGGGGGTTCTGCGCCCGCTT
GGGATTTGACCCTGATGTCTCCTCGCAATTCCATGTCTTTGAGTTTGTGCCATGTGATGA
TGTGACTGGGGTGAAGATCTACTCTTCTGAAACCAGAGAATGGAATTACAGGGAAAGTGA
ATGGTGCACTGATACCGGCAT

consensusID : consensus_13650#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 380
fasta sequence 
                              [GGAAGCGTGGAAGCAGTGGAAGGGTTGCAGTCAAAGCTAACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCACTACGAGGAGCTCAAGCAGAATTATGAGATAGCTCGTGATGACTACCAGACGGGTCGATCAAATGCCCATCTTGTTTAGTCTGATGATGATCCTAGGTCTACAATTTTCAACCCTATGATTCTATTCCTACTAGTAGTATTCTAGTTGAACATCTGAGAGTATTTTGGTACATATAGTACGTTAATGATGAGGTTGTAATACATATATGTTGGGTTAAAAAGCGGC-GTTGCAAAAATATACTTCGGTACTATATTTGCCAAAGCTCAAGGATTGTCAGAATGGCCCAACAG]

[-] EMBL AU225496             [GGAAGCGTGGAAGCAGTGGAAGGGTTGCAGTCAAAGCTAACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCACTACGAGGAGCTCAAGCAGAATTATGAGATAGCTCGTGATGACTACCAGACGGGTCGATCAAATGCCCATCTTGTTTAGTCTGATGATGATCCTAGGTCTACAATTTTCAACCCTATGATTCTATTCCTACTAGTAGTATTCTAGTTGAACATCTGAGAGTATTTTGGTACATATAGTACGTTAATGATGAGGTTGTAATACATATATGTTGGGTTAAAAAGCGGC                                                                  ]
[+] EMBL BE530921             [                                                                                           ACGAGGAGCTCAAGCAGAATTATGAGATAGCTCGTGATGACTACCAGACGGGTCGATCAAATGCCCATCTTGTTTAGTCTGATGATGATCCTAGGTCTACAATTTTCAACCCTATGATTCTATTCCTACTAGTAGTATTCTAGTTGAACATCTGAGAGTATTTTGGTACATATAGTACGTTAATGATGAGGTTGTAATACATATATGTTGGGTT AAGGGTTACAGTTGCAAAAATATACTTCGGTACTATATTTGCCAAAGCTCAAGGATTGTCAGAATGGCCCAACAG]




>consensus_13650#2
GGAAGCGTGGAAGCAGTGGAAGGGTTGCAGTCAAAGCTAACTACGGTTCTGGATCGCCTG
ACAAAGTTCTCAGAGGCTTCACTGAAGCACTACGAGGAGCTCAAGCAGAATTATGAGATA
GCTCGTGATGACTACCAGACGGGTCGATCAAATGCCCATCTTGTTTAGTCTGATGATGAT
CCTAGGTCTACAATTTTCAACCCTATGATTCTATTCCTACTAGTAGTATTCTAGTTGAAC
ATCTGAGAGTATTTTGGTACATATAGTACGTTAATGATGAGGTTGTAATACATATATGTT
GGGTTAAAAAGCGGCGTTGCAAAAATATACTTCGGTACTATATTTGCCAAAGCTCAAGGA
TTGTCAGAATGGCCCAACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13650#0      -------------------------------------CGCCTTCTTGAACAGTTTCCCCA 23
consensus_13650#1      CCTCCCCCTCTAAAACCCCAGCACCCAGAGCCGCCGGCGGCGGCGGCGACGGCGACTCGG 60
consensus_13650#2      --------------------------------------------------GGAAGCGTGG 10
                                                                          *   *    

consensus_13650#0      AT------TTTCTGAC--CGCCGCTTTGTTTGCAGCTCGCGCTTCCTGTCGACATGGCGA 75
consensus_13650#1      AAAGGGGATCTCCGGCGACGTCTCGCGGATCTCCGGTTGCGCTTCTTGGCGACATGGCGA 120
consensus_13650#2      AAG------CAGTGGAAGGGTTGCAGTCAAAGCTAACTACGGTTCTGGATCGCCTGACAA 64
                       *            *     *   *        *      ** ***  *    * ** * *

consensus_13650#0      AGAAATCCAAGCTGAAGAAGGAGGGATCCAGTACGACGAGGAATCCGGCGGCCGAGCTCA 135
consensus_13650#1      AGGGATCCAAG---AAGAAGAAGGGATCCAGTGCGACGAGGAATCCGGCGGCCGAGCTCA 177
consensus_13650#2      AGTTCTC--------AGAGGCTTCACTGAAGCACTACGAGGAGCTCAA--GCAGAATTAT 114
                       **   **        *** *      *  **  * *******   *    ** **  *  

consensus_13650#0      CCGACGACCTCATCGTCGACATCCTCTCCCGCCTCCCCGC-AAGTCGGTCTGCCGATGCA 194
consensus_13650#1      CCGACGACCTCATCGTGGAGATCCTCTCCCGCCTCCCCGCCAAGTCGGTCCGCCGATGCA 237
consensus_13650#2      GAGATAGC----TCGTGATGA-----------CTACCAGACGGGTCGATCAAATGCCCAT 159
                         **   *    ****    *           ** ** *    **** **    *     

consensus_13650#0      AGTGCGTATCCAGGCGGTGGCGCGGCCTCATCTCCGACCCCGACCACCGCAAGAAGCTCC 254
consensus_13650#1      GGCGCGTATGCAGGCGGTGGCGCCGC-TCATCTCCGATCCCCATCACCGCAAGAAGCTCC 296
consensus_13650#2      CTTGTTTAGTCTGATGATGATCCTAG---GTCTACAATTTTCA--ACCCTATGATTCTAT 214
                          *  **  * *  * **   *       *** * *     *  ***  * **  **  

consensus_13650#0      CCCAAACCCTCGCCGGCTTCTTCTACCGCAGCGAGAACGA-ATCACGCTGCCCCCAAGCT 313
consensus_13650#1      CCCAAACCCTCGNCGGCTTCTTCCACCTCAGCGTGAACGA-ATCACGCT-TTCCCGTGGA 354
consensus_13650#2      TCCTACTAGTAGTATTCTAGTTGAACATCTGAGAGTATTTTGGTACATATAGTACGTTAA 274
                        ** *    * *    **  **  **  * * * * *       **        *     

consensus_13650#0      AGCGCGCCATTTCGTCAATGTCACCGGCAGAGG------CCGGCCTCTCATCTGCCCAAC 367
consensus_13650#1      AGCACGCCATTTCGTCAATGTCTCCGGGATAGGGGGACGCCTGCCTCACGTCTGCCCATC 414
consensus_13650#2      TGATGAGGTTGTAATACATATATGTTGGGTTAAAAAGCGGC-GTTGCAAAAATATACTTC 333
                        *       * *  *  ** *     *             * *   *     *   *  *

consensus_13650#0      CATCTCCTTCCTGCCTCGCTTCGACTTGGAGGGCATGAGGATGGTG-GACTGCTGCGGCG 426
consensus_13650#1      CTTCTCCTTCCTGCCTCGCTTT------GAGCGCATCAGTATGGTG-GACAGCTGCGGCG 467
consensus_13650#2      GGTACTATATTTGCCAAAGCTCA-----AGGATTGTCAGAATGGCCCAACAG-------- 380
                         *    *   ****     *         *    * ** ****    ** *        

consensus_13650#0      GCCTCCTCCTCTTCCGCTGCTTCATGAGCTCGGACGAATTCTGCTACCTCGTGTGCAATC 486
consensus_13650#1      ACCTCCTCCTCTGCCAATGCTTCGAGAGCTCAGATGCATTCCGCTACGTCGTATTCAATC 527
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      CCTCCACCGAGGAATGGGTTGCCTTCCCAGATTCCGGCTACAACCCCGAG---TGGCAGT 543
consensus_13650#1      CTTGTACTGAGGAATGGATCGTCTTGCCGGAGTCCGGCTTCCACCCCAAGGACCGGGGGT 587
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TCTTCACCCATTTGGGGTTTGATCCTGCCGTCTCCTCGCACTTCCATGTCTTTGAGTTTG 603
consensus_13650#1      TCTGCGCCCGCTTGGGATTTGACCCTGATGTCTCCTCGCAATTCCATGTCTTTGAGTTTG 647
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TGATGGGTGATTGTGGATTTGTGGAAGGGGTGGAGATCTACTCTTCGGAAACCGGATTAT 663
consensus_13650#1      TGCCATGTGATGATG------TGACTGGGGTGAAGATCTACTCTTCTGAAACCAGAGAAT 701
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      GGAATTTCATGGAAAGTGAATGGGACCCTGAAACCACCGTATATGATCGCACAAGGACCT 723
consensus_13650#1      GGAATTACAGGGAAAGTGAATGGTGCACTGATACCGGCAT-------------------- 741
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TTTTCAATGGCATGCTGCATTTAGTTGAAGAGGGGATTGCGATATTATCAGTAGATGTGG 783
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      AAGGGGAGATATGGCAGAGCATTGGCGCCCCGAGACCGGAACTAGAAAATGTGGAAGATA 843
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TGTTTGCTTTGGTGTCTTGTTTCATCGGTCAATCCCAAGGGAAATTGTGCTACCTCAGTG 903
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      CATATGACACTGTCCCTTGGAACCTGTCAATATGGGTTCTTGAGGATTATTCCAAGGATG 963
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      AATGGACATTGAAGCATAAGCTGACTACCGAACAGCTGTCTGAGAAGATAAACTGCAAGT 1023
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      GCAAAACCGACTTCGACAAGGCTTGGTACTACCACGTGGTCGCAGTTCATTCAGAGTGCA 1083
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      ATTTGATTTACTATATTGCTGGCGGAGATACACTGATGTCATATGACATGGGTCATAAAC 1143
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      AATCGTGTGTTATTGAAAATCTTGGGCCGGGTAATAACAGTGGATATCTTCCCTATGTTC 1203
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      CACTCTACTCAGAAATATTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTG 1263
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGGTTGCAGTCAAAGCTGACTACGGT 1323
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAAGCA 1383
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      GAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTA 1443
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      GTCTGATGATGCCCGTCAAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATT 1503
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      AGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAGCCATCATGCGTGAGTGCTTGATA 1563
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACTTGT 1623
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      CTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGGATG 1683
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TAAAACAGTGGTTCTGTTTCGTGGAATTTGAGTTGTATCAGTTATGATGACATTACTTGC 1743
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      TTGTCCTTTTGTGCAGTATCAGGTCTGTTGCTTGCTAAAATCATATGACCAAAATATGCA 1803
consensus_13650#1      ------------------------------------------------------------
consensus_13650#2      ------------------------------------------------------------
                                                                                   

consensus_13650#0      AGTTT 1808
consensus_13650#1      -----
consensus_13650#2      -----


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)