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Oryza sativa
cluster # 13651 cluster # 13651       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13651#0 length = 1073 sequences # 9  
consensus_13651#1 length = 663 sequences # 2  
consensus_13651#2 length = 518 sequences # 1  
consensus_13651#3 length = 313 sequences # 1  

consensusID : consensus_13651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1073
fasta sequence
                              [CACCCCACAGAGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGAGGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGA-TAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCAT-AAACTTTCCAAGTTCCTACAAGG-TGATAC-TGGAC-TGTTCTTTAC-TAATCTTCCAAG-AGATGATGTA-GAGA-GATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTGACAGAAACGGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAGCTATTCGTGTCTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGTTGGTA-TTTAAACTCTTCTGAACAATTGTTACTCCCTGAATGAATTCGTTGGTAGCTATAATTTG]

[+] EMBL CF314878             [CACCCCACAGAGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGACGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTTGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGANTAGCGTTGGGGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCAT AAACTTTCCAAGTTCCTACAAGG TGATAC TGGAC TGTTCTTTAC TAATCTTCCAAG AGATGATGTA GAGA GATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGCGACAGAAACGGTGGAGCTAAAAGAAGGCCCCTTAGAACAGTTTACACATGAAATGGAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK067673             [          AGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGAGGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGA TAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCAT AAACTTTCCAAGTTCCTACAAGG TGATAC TGGAC TGTTCTTTAC TAATCTTCCAAG AGATGATGTA GAGA GATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTGACAGAAACGGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAGCTATTCGTGTCTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGTTGGTA TTTAAACTCTTCTGAACAATTGTTACTCCCTGAATGAATTCGTTGGTAGCTATAATTTG]
[+] EMBL CF337172             [                     CGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGAGGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGA TAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCAT AAACTNTCCAAGTTCCTACAAGG TGATAC TGGAC TGTTCTTTAC TAATCTTCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF324991             [                               GCCAGCCGCAACAGCACCGACGACGAGGAGGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGA TAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF325013             [                               GCCAGCCGCAACAGCACCGACGACGAGGAGGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGA TAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCAT AAACTTTCCAAGTTCCTACAAGG TGATAC TGGAC TGTTCTTTAC TAATCTTCCAAG AGATGATGTA GAGA GATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTGACAGAAACGGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C27499               [                                                                                           CAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTTGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGA TAGCGTTGGGGCGTTCACCTGCTGATGAAGCTAAAACAGGNCTTCATAAAACTTTCCAAGTTCCTACAAGGTTGATACTTGGNCTTGTTCTTTACTTAATCTTCCAAGNGGATGATGTAGGAGAGGATTATTTngggga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA767467             [                                                                                                                                                                                                                                                                                                           GTC TGCAGA TAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCAT AAACTTTCCAAGTTCCTACAAGG TGATAC TGGAC TGTTCTTTAC TAATCTTCCAAG AGATGATGTA GAGA GATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTGACAGAAACGGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTAGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGNTGTCCTAGTATTTTCTATAAAGCTATTCGTGTCTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGGTGGTATTTTAAACTCTTCTG ACAATTGGTACTNCCTGAATGAATTCGnt               ]
[+] EMBL C96747               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTGAACAAAGGGNCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAGCTATTCGTGTCTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGTTGGTA TTTAAACTCTTCTGAACAAaaa                                     ]
[+] EMBL OSC24571             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACTCTNCGGTTGCTTNGNATGCAGATGGCAACATTCCGACTGTACCTTGTCTNCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTNCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACANCCAGTTTGCAGTNACGNACTTGCTGTCTTGTNGTGCTGAGGCAGTTTTTGGTATTGTGCGTGC                                                                                                                                                                                                                  ]


>consensus_13651#0 CACCCCACAGAGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGA GGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCA AGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATG CCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGC TCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGG TCATGCAGATAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAAC TTTCCAAGTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATG TAGAGAGATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTGA CAGAAACGGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCT TTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGGGGCGGTGGAATTAGTTGCAG ATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGT TGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATG ACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTT AAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGA GGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTG AAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAGCTATTCGT GTCTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGTTGGTATTTAAA CTCTTCTGAACAATTGTTACTCCCTGAATGAATTCGTTGGTAGCTATAATTTG



consensusID : consensus_13651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence
                              [TCACNAATCTTCCCAAAGAGGATGATTGTAGAGAGATTATTTCCGAGAATTCGAAGAGCCATGATTTCCGCCNGGACCAGGAAGTCATTGCGNCAGAAACGG-AAAGCTTAAGGAAGGCCCCTTAGANCAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGAATGCCAGTTCGTCTGAACAAAGGTGCGGTAGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAANCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCCTGCCGGTGGTCCTCTGATGACTTCGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTCTGTGCTCTTTTTTGCCGGAATGACCGAAGGAGGTCATTCAATGTAAGCGTCTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAACTCTTCGTGTCTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU085725             [TCACNAATCTTCCCAAAGAGGATGATTGTAGAGAGATTATTTCCGAGAATTCGAAGAGCCATGATTTCCGCCNGGACCAGGAAGTCATTGCGNCAGAAACGG AAAGCTTAAGGAAGGCCCCTTAGANCAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGAATGCCAGTTCGTCTGAACAAAGGTGCGGTAGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAANCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCCTGCCGGTGGTCCTCTGATGACTTCGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTCTGTGCTCTTTTTTGCCGGAATGACCGAAGGAGGTCATTCAATGTAAGCGTCTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAACTCTTCGTGTCTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF314879             [                             AGAGAGATTATTT CGAGAATTCGAAGAG CATGATTT CGCCAGGA CAGGAAGT ATTGCGACAGAAACGGTGGAGCTTAAGGAAGGCCCCTTAGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGAATGCCAGTTCGTCTGAACAAAGGTGCGGTAGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGT CTGCCGGTGGTCCTCTGATGACTTCGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTCTGTGCTCTTTTTTGCCGGAATGACCGAAGGAGGTCATTCAATGTAAGCGTCTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAACTCTTCGTGTCTTATTAAAAAA                         ]


>consensus_13651#1 TCACNAATCTTCCCAAAGAGGATGATTGTAGAGAGATTATTTCCGAGAATTCGAAGAGCC ATGATTTCCGCCNGGACCAGGAAGTCATTGCGNCAGAAACGGAAAGCTTAAGGAAGGCCC CTTAGANCAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGAATGCCAGTTCG TCTGAACAAAGGTGCGGTAGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAANCC CATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCG ACTGTACCTTGTCCTGCCGGTGGTCCTCTGATGACTTCGAAGTTTACAAGGAAGGCTTGG CGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTT TGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCA TGGCGTCTGTGCTCTTTTTTGCCGGAATGACCGAAGGAGGTCATTCAATGTAAGCGTCTG TGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCT AGTATTTTCTATAAAACTCTTCGTGTCTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA



consensusID : consensus_13651#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence
                              [TCTTGTTAAACCCTAGAGCCACCACCCCACAGAGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGACGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGGTAACTGCATCTAATCCCTATACTCCGCGGCGATTCGTTGCTCATCCATCTATCTGACTGATTCTATTCTTACCTCGCTCATATCCTATCTTTTGCAATTTTATATATGCTGTTAGTTCTAATCATAGAGAATCATACAGTTTACTTTGCACAGCTTGTTTACTTCATTCATGCTTTTCACTCGCCAGTAGTAAGGTACAGACTATGCTGTGATGCTGTTTCCCCAAGGCCAAGGGGAGATCCAAAAACCTTCTCTTTTTATTTTTTTTTTCTATCCTGCATATTCTGCACAGATCGCTCTTGTTTTGTAATTAGTTAGTTATCAGCACCAAAGCTCTAATTTGTGCCCCTGATTCGAGCGCAGTAACCTTATCCAAGACCAAGAAGA]

[+] EMBL CF314451             [TCTTGTTAAACCCTAGAGCCACCACCCCACAGAGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGACGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGGTAACTGCATCTAATCCCTATACTCCGCGGCGATTCGTTGCTCATCCATCTATCTGACTGATTCTATTCTTACCTCGCTCATATCCTATCTTTTGCAATTTTATATATGCTGTTAGTTCTAATCATAGAGAATCATACAGTTTACTTTGCACAGCTTGTTTACTTCATTCATGCTTTTCACTCGCCAGTAGTAAGGTACAGACTATGCTGTGATGCTGTTTCCCCAAGGCCAAGGGGAGATCCAAAAACCTTCTCTTTTTATTTTTTTTTTCTATCCTGCATATTCTGCACAGATCGCTCTTGTTTTGTAATTAGTTAGTTATCAGCACCAAAGCTCTAATTTGTGCCCCTGATTCGAGCGCAGTAACCTTATCCAAGACCAAGAAGA]


>consensus_13651#2 TCTTGTTAAACCCTAGAGCCACCACCCCACAGAGCAACATCGCCGCCGCCACCGCCAGCC GCAACAGCACCGACGACGAGGACGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGC AACCGCCCTGGTAACTGCATCTAATCCCTATACTCCGCGGCGATTCGTTGCTCATCCATC TATCTGACTGATTCTATTCTTACCTCGCTCATATCCTATCTTTTGCAATTTTATATATGC TGTTAGTTCTAATCATAGAGAATCATACAGTTTACTTTGCACAGCTTGTTTACTTCATTC ATGCTTTTCACTCGCCAGTAGTAAGGTACAGACTATGCTGTGATGCTGTTTCCCCAAGGC CAAGGGGAGATCCAAAAACCTTCTCTTTTTATTTTTTTTTTCTATCCTGCATATTCTGCA CAGATCGCTCTTGTTTTGTAATTAGTTAGTTATCAGCACCAAAGCTCTAATTTGTGCCCC TGATTCGAGCGCAGTAACCTTATCCAAGACCAAGAAGA



consensusID : consensus_13651#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence
                              [CGGTTGCTTGGGATGCAGATGGCAANATTCCGACTGTNCCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTNGTATTTTCTATAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031511             [CGGTTGCTTGGGATGCAGATGGCAANATTCCGACTGTNCCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTNGTATTTTCTATAAAAAAAAAAAAAAAAAAAAA]


>consensus_13651#3 CGGTTGCTTGGGATGCAGATGGCAANATTCCGACTGTNCCTTGTCTGCCGGTGGTCCTCT GATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCT TCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTG CTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAA TCTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTNGTATTTTCTATAAAAAAAA AAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13651#1      ------------------------------------------------------------
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      CACCCCACAGAGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGA 60
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      ------------------------------------------------------------
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      GGAGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCA 120
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      ------------------------------------------------------------
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      AGACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATG 180
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      ------------------------------------------------------------
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      CCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGC 240
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      ------------------------------------------------------------
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      TCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGG 300
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      ------------------------------------------------------------
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      TCATGCAGATAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAAC 360
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      ------------------------------------TCACNAATCTTCCCAAAGAGGATG 24
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      TTTCCAAGTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATG 420
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      ATTGTAGAGAGATTATTTCCGAGAATTCGAAGAGCCATGATTTCCGCCNGGACCAGGAAG 84
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      ----TAGAGAGATTATTTC-GAGAATTCGAAGAGC-ATGATTTC-GCCAGGAC-AGGAAG 472
consensus_13651#2      ------------------------------------------------------------
                                                                                   

consensus_13651#1      TCATTGCGNCAGAAACGG-AAAGCTTAAGGAAGGCCCCTTAGANCAGTTTACACATGAAA 143
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      T-ATTGTGACAGAAACGGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAA 531
consensus_13651#2      -------------------------------------------------------TCTTG 5
                                                                                   

consensus_13651#1      TGGAACCCTTTCTACGCAAGCAAGGAATGCCAGTTCGTCTGAACAAAGGTGCGGTAGAAT 203
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      TGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGGGGCGGTGGAAT 591
consensus_13651#2      TTAAACCCTAGAGCCACCACCCCACAGAGCAACATCGCCGCCGCCACCGC-CAGCCGCAA 64
                                                                                   

consensus_13651#1      TAGTTGCAGATCACATAGTATGTGAAGAAGGGAANCCCATTTCACCAGAAGCAGCACAAA 263
consensus_13651#3      ------------------------------------------------------------
consensus_13651#0      TAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAA 651
consensus_13651#2      CAGCACCGACGACGAGGACGAGCTGAGAATACGAGGCGATGCCGA-AATCCAAGCGCAAC 123
                                                                                   

consensus_13651#1      CTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCCTGCCGGTGG 323
consensus_13651#3      -----CGGTTGCTTGGGATGCAGATGGCAANATTCCGACTGTNCCTTGTC-TGCCGGTGG 54
consensus_13651#0      CTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTC-TGCCGGTGG 710
consensus_13651#2      CGCCCTGGTAACT--GCAT-CTAATCCCTATACTCCG-CGGCGATTCGTTGCTCATCCAT 179
                             ***  **  * ** *  **  * * * **** * *    * **    *      

consensus_13651#1      TCCTCTGATGACTTCGAAGTTTACAAGGAAGGCTTGGCG-CAACTGCGAGCTGAAGCTGA 382
consensus_13651#3      TCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCG-CAACTGCGAGCTGAAGCTGA 113
consensus_13651#0      TCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCG-CAACTGCGAGCTGAAGCTGA 769
consensus_13651#2      CTATCTGACTGATTCTATTCTTACCTCGCTCATATCCTATCTTTTGCAATTTTATATATG 239
                          *****    **  *   ****   *      *     *   *** *  * *      

consensus_13651#1      TGATTCTTCTTAAGCTTGTTTGGCTTGCACA-CCCAGTTTGCAGTGACGCACTTGCTGTC 441
consensus_13651#3      TGATTCTTCTTAAGCTTGTTTGGCTTGCACA-CCCAGTTTGCAGTGACGCACTTGCTGTC 172
consensus_13651#0      TGATTCTTCTTAAGCTTGTTTGGCTTGCACA-CCCAGTTTGCAGTGACGCACTTGCTGTC 828
consensus_13651#2      CTGTTAGTTCTAATCATAGA-GAATCATACAGTTTACTTTGCA-CAGCTTGTTTACTTCA 297
                          **  *  *** * *    *  *   ***    * ******    *    ** **   

consensus_13651#1      TTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTCTGTGCTCTTTTTTG 501
consensus_13651#3      TTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTT----- 227
consensus_13651#0      TTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTT----- 883
consensus_13651#2      TTCATGCTTTTCACTCGCCAGTAGTAAGGTACAGAC-TATGCTGTG-ATGCTGTTTC--- 352
                       **  **   *      *    * ***  ** *   *  ***  **   **** **     

consensus_13651#1      CCGGAATGACCGAAGGAGGTCATTCAATGTAAGCGTCTGTGCTCTTGGTACGTTGGAAAT 561
consensus_13651#3      ----------------------------------------------GGTACGTTGGAAAT 241
consensus_13651#0      ----------------------------------------------GGTACGTTGGAAAT 897
consensus_13651#2      -----------------------------------------CCCAAGGCCAAGGGGAGAT 371
                                                                     **      *** **

consensus_13651#1      CTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAACTCTT 621
consensus_13651#3      CTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTNGTATTTTCTATAAAA----- 296
consensus_13651#0      CTGAAAAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAGCTATT 957
consensus_13651#2      CCAAAAACCTTCTCTTTTTATTT--TTTTTTTCTATCCT-GCATATTCTGCACAGAT--- 425
                       *  ****   *    * ***      * **   * **** * ** ****  * *      

consensus_13651#1      CGTGTCTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 663
consensus_13651#3      -----------AAAAAAAAAAAAAAAAA-------------------------------- 313
consensus_13651#0      CGTGTCTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGTTGGTATTT 1017
consensus_13651#2      CGCTCTTGTTTTGTAATTAGTTAGTTATCAGCACCAAAGCTCTAATTTGTGCCCCTGATT 485
                                     *       *                                     

consensus_13651#1      --------------------------------------------------------
consensus_13651#3      --------------------------------------------------------
consensus_13651#0      AAACTCTTCTGAACAATTGTTACTCCCTGAATGAATTCGTTGGTAGCTATAATTTG 1073
consensus_13651#2      CGAGCGCAGTAACCTTATCCAAGACCAAGAAGA----------------------- 518
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)