These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2586 fasta sequence [CTCCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC----AAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC-GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGAAATGGCACCAGTAGGGTATGTAGGCGTCAGTCCAAAATGCATTCTAGGCTTCAATAAGAACATGGGAGAGGAAATATCCCTTCGCCTACGAACTGATGACTTGAAAGGATTTAGGAAATATGAAAGTATCAAGAGAACTCTACTCCATGAACTTGCACACATGGTGCACTCCGAGCATGATGCAAATTTTTTTGCTCTTAATAAGCAGTTGAATGATGAAGCAGCTTCCTTGGACTGGACCAAGTCAAGAGGTCATGTGCTGAGTGGTCGCAAAATCTTCGATTCCTATGAAGACGAATTTGTTCTGGAGCCAGACAGTGTTGTTGTTGGCCACAAACTTGGAGGAGGATCCAGTTCACTGGCAAGTGCTCGTGTGTTGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGTCCTCAGTTTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGTTGATATTCTTAGCCAGGAGTTGACGATTGATGGGAAGCAGAATGGAGAACCTGATCCTGACGATAATGGTACTAGCAAATTTATTCCCGAACCTGTAAACAAGATGGAAGTAGAGACTGAATTGGGAAGTAACTTCGCAGTTCAGAATTCTGAACCTGATCCTGATGATTCCTCAAATGCTATTCTGAATAAGAAGCTGGGAACTGACAGGTCTGATGAAACTACATGCGAAGCTGTTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGGCCTG--AATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTCATCAAATAT-ACAAACTATAGATAAATTACCTGGCAAAAAAAAAAAAAAAAAAG] [-] EMBL CF300284 [CTCCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC AAAAAA ] [+] EMBL AK101328 [ CCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC AAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGTGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCGAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTCGGATTTCGGTCACTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGAACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCCCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGAAATGGCACCAGTAGGGTATGTAGGCGTCAGTCCAAAATGCATTCTAGGCTTCAATAAGAACATGGGAGAGGAAATATCCCTTCGCCTACGAACTGATGACTTGAAAGGATTTAGGAAATATGAAAGTATCAAGAGAACTCTACTCCATGAACTTGCACACATGGTGCACTCCGAGCATGATGCAAATTTTTTTGCTCTTAATAAGCAGTTGAATGATGAAGCAGCTTCCTTGGACTGGACCAAGTCAAGAGGTCATGTGCTGAGTGGTCGCAAAATCTTCGATTCCTATGAAGACGAATTTGTTCTGGAGCCAGACAGTGTTGTTGTTGGCCACAAACTTGGAGGAGGATCCAGTTCACTGGCAAGTGCTCGTGTGTTGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGTCCTCAGTTTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGTTGATATTCTTAGCCAGGAGTTGACGATTGATGGGAAGCAGAATGGAGAACCTGATCCTGACGATAATGGTACTAGCAAATTTATTCCCGAACCTGTAAACAAGATGGAAGTAGAGACTGAATTGGGAAGTAACTTCGCAGTTCAGAATTCTGAACCTGATCCTGATGATTCCTCAAATGCTATTCTGAATAAGAAGCTGGGAACTGACAGGTCTGATGAAACTACATGCGAAGCTGTTGTAGAAGAATGTGTAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATGTCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCAGTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTTCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTACAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTATTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGGCCTCTCTTGAAGTTTCCATGGCCTG AATTGTTTCACCAAGCAATCTCCTATTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGATGATTGTTTGTATATGGAAACACCAAAATGGTCTATACTGTCTGTCAACACACTTCATGATTTCTCATCAAATAT ACAAACTATAGATAAA ] [+] EMBL CF300285 [ GTACGGCCGATGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC AAAAA ] [+] EMBL CB635161 [ TGGAACATTCGCTTGCCTCCGCCAAAAAAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAAACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAGATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGANGTGAATCCTCCACCTT ] [+] EMBL CB630016 [ tgccCATTCACTTGCCTCCGCCAAAAAAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCACCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAGATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAaa ] [+] EMBL CB633915 [ GAGGGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCANGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGA ] [+] EMBL CB632556 [ GGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGAC ] [+] EMBL CF323029 [ tcGGATTTTTGTCACTTGGAGAGGCATACAGATCGATGTCGATGCAGACCCGAACTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTGCCGACCCTCATTCAGGACTGACATTGAAAGAATCTGCTATTAATGATGGGAAGCCTATTACAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATCACGACAATGGCAAAAGAACAGATCTACG ] [-] EMBL CB633916 [ CTGGGAATTGACAGGTCTGATGAAACTACATGCGAAGCTGTTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGGCCTGACAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGAGGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTCATCAAGTAT ACAAACTATAGATAAATTACCTG ] [-] EMBL CB632557 [ TTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCCCATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCCCAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGGCCTGACAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTCATCAAATAT GGGAACTATAGATAAATTCCCTGGCAAAAAAAAAAAAAAAAAAG] [-] EMBL CB630017 [ CAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGTTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCCCATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGCCCTGACAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGCCAAATGATGTAGTATGGTCTTCCTACATTTTGAGGGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTC TCCTATATGACAAACTATAGATAAATTACC ] consensusID : consensus_13679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [CNGGTACGCGTGGGCGNACGCGTGGGGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGGTCCTCAGTNTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGGTTGATATTCTTAGCCA] [+] EMBL C96850 [CNGGTACGCGTGGGCGNACGCGTGGGGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGGTCCTCAGTNTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGGTTGATATTCTTAGCCA] consensusID : consensus_13679#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence [CCGGATTTATCTATAGTTTGTATATTTGATGAGAAATCATGAAGTGTGTTGACAGACAGTATAGAAACTATAGATAAATTACC] [+] EMBL BM422079 [CCGGATTTATCTATAGTTTGTATATTTGATGAGAAATCATGAAGTGTGTTGACAGACAGTATAGAAACTATAGATAAATTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13679#0 CTCCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCCAAAAAA 60 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 AAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCAGCCGCCTCGCTCGTC 120 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTC 180 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGA 240 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGC 300 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTG 360 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 GATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGT 420 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 GAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCT 480 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCA 540 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGG 600 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGTTTTTAATGATGAAATCGAGGAAGTATCGGACAATGGCAAAAGAACAGATCTACGGAT 660 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 AATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGT 720 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACC 780 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATG 840 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGA 900 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 AATGGCACCAGTAGGGTATGTAGGCGTCAGTCCAAAATGCATTCTAGGCTTCAATAAGAA 960 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CATGGGAGAGGAAATATCCCTTCGCCTACGAACTGATGACTTGAAAGGATTTAGGAAATA 1020 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGAAAGTATCAAGAGAACTCTACTCCATGAACTTGCACACATGGTGCACTCCGAGCATGA 1080 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGCAAATTTTTTTGCTCTTAATAAGCAGTTGAATGATGAAGCAGCTTCCTTGGACTGGAC 1140 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CAAGTCAAGAGGTCATGTGCTGAGTGGTCGCAAAATCTTCGATTCCTATGAAGACGAATT 1200 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGTTCTGGAGCCAGACAGTGTTGTTGTTGGCCACAAACTTGGAGGAGGATCCAGTTCACT 1260 consensus_13679#1 --------------------------------------------------CNGGTACGC- 9 consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 GGCAAGTGCTCGTGTGTTGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGC 1320 consensus_13679#1 -GTGGGCGNACGCGTGGGGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGC 68 consensus_13679#2 -----------------------------CCGGATTTATCTATAGTTTGTATATTTGATG 31 * * * ** * **** ** * * consensus_13679#0 GGATTTAGAGAGTTCTAAAGACAG-CGTTACTATACCTGGAAATGAAATTCTTGTGCCTA 1379 consensus_13679#1 GGATTTAGAGAGTTCTAAAGACAG-CGTTACTATACCTGGAAATGAAATTCTTGTGCCTA 127 consensus_13679#2 AGAAATCATGAAGTGTGTTGACAGACAGTATAGAAACTATAGATAAATTACC-------- 83 ** * ** * * ***** * ** * ** * ** ** * * consensus_13679#0 ACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTA 1439 consensus_13679#1 ACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTA 187 consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 AGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCAT 1499 consensus_13679#1 AGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCAT 247 consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CTTGG-TCCTCAGTTTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCT 1558 consensus_13679#1 CTTGGGTCCTCAGTNTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCT 307 consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 GACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGAT 1618 consensus_13679#1 GACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGAT 367 consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TCCTCAAATG-TTGATATTCTTAGCCAGGAGTTGACGATTGATGGGAAGCAGAATGGAGA 1677 consensus_13679#1 TCCTCAAATGGTTGATATTCTTAGCCA--------------------------------- 394 consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 ACCTGATCCTGACGATAATGGTACTAGCAAATTTATTCCCGAACCTGTAAACAAGATGGA 1737 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 AGTAGAGACTGAATTGGGAAGTAACTTCGCAGTTCAGAATTCTGAACCTGATCCTGATGA 1797 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TTCCTCAAATGCTATTCTGAATAAGAAGCTGGGAACTGACAGGTCTGATGAAACTACATG 1857 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CGAAGCTGTTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAA 1917 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCAT 1977 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCAT 2037 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTT 2097 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAA 2157 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 GTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGA 2217 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 ACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTT 2277 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 GGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTC 2337 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CATGGCCTGAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATT 2397 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCT 2457 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 TCCTACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACA 2517 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 CACTTGATGATTTCTCATCAAATATACAAACTATAGATAAATTACCTGGCAAAAAAAAAA 2577 consensus_13679#1 ------------------------------------------------------------ consensus_13679#2 ------------------------------------------------------------ consensus_13679#0 AAAAAAAAG 2586 consensus_13679#1 --------- consensus_13679#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||