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Oryza sativa
cluster # 13679 cluster # 13679       Sequences # 13       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13679#0 length = 2586 sequences # 11  
 consensus_13679#1 length = 394 sequences # 1  
consensus_13679#2 length = 83 sequences # 1  
consensusID : consensus_13679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 2586
fasta sequence 
                              [CTCCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC----AAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC-GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGAAATGGCACCAGTAGGGTATGTAGGCGTCAGTCCAAAATGCATTCTAGGCTTCAATAAGAACATGGGAGAGGAAATATCCCTTCGCCTACGAACTGATGACTTGAAAGGATTTAGGAAATATGAAAGTATCAAGAGAACTCTACTCCATGAACTTGCACACATGGTGCACTCCGAGCATGATGCAAATTTTTTTGCTCTTAATAAGCAGTTGAATGATGAAGCAGCTTCCTTGGACTGGACCAAGTCAAGAGGTCATGTGCTGAGTGGTCGCAAAATCTTCGATTCCTATGAAGACGAATTTGTTCTGGAGCCAGACAGTGTTGTTGTTGGCCACAAACTTGGAGGAGGATCCAGTTCACTGGCAAGTGCTCGTGTGTTGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGTCCTCAGTTTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGTTGATATTCTTAGCCAGGAGTTGACGATTGATGGGAAGCAGAATGGAGAACCTGATCCTGACGATAATGGTACTAGCAAATTTATTCCCGAACCTGTAAACAAGATGGAAGTAGAGACTGAATTGGGAAGTAACTTCGCAGTTCAGAATTCTGAACCTGATCCTGATGATTCCTCAAATGCTATTCTGAATAAGAAGCTGGGAACTGACAGGTCTGATGAAACTACATGCGAAGCTGTTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGGCCTG--AATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTCATCAAATAT-ACAAACTATAGATAAATTACCTGGCAAAAAAAAAAAAAAAAAAG]

[-] EMBL CF300284             [CTCCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC    AAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK101328             [  CCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC    AAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGTGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCGAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTCGGATTTCGGTCACTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGAACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCCCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGAAATGGCACCAGTAGGGTATGTAGGCGTCAGTCCAAAATGCATTCTAGGCTTCAATAAGAACATGGGAGAGGAAATATCCCTTCGCCTACGAACTGATGACTTGAAAGGATTTAGGAAATATGAAAGTATCAAGAGAACTCTACTCCATGAACTTGCACACATGGTGCACTCCGAGCATGATGCAAATTTTTTTGCTCTTAATAAGCAGTTGAATGATGAAGCAGCTTCCTTGGACTGGACCAAGTCAAGAGGTCATGTGCTGAGTGGTCGCAAAATCTTCGATTCCTATGAAGACGAATTTGTTCTGGAGCCAGACAGTGTTGTTGTTGGCCACAAACTTGGAGGAGGATCCAGTTCACTGGCAAGTGCTCGTGTGTTGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGTCCTCAGTTTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGTTGATATTCTTAGCCAGGAGTTGACGATTGATGGGAAGCAGAATGGAGAACCTGATCCTGACGATAATGGTACTAGCAAATTTATTCCCGAACCTGTAAACAAGATGGAAGTAGAGACTGAATTGGGAAGTAACTTCGCAGTTCAGAATTCTGAACCTGATCCTGATGATTCCTCAAATGCTATTCTGAATAAGAAGCTGGGAACTGACAGGTCTGATGAAACTACATGCGAAGCTGTTGTAGAAGAATGTGTAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATGTCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCAGTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTTCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTACAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTATTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGGCCTCTCTTGAAGTTTCCATGGCCTG  AATTGTTTCACCAAGCAATCTCCTATTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGATGATTGTTTGTATATGGAAACACCAAAATGGTCTATACTGTCTGTCAACACACTTCATGATTTCTCATCAAATAT ACAAACTATAGATAAA                            ]
[+] EMBL CF300285             [           GTACGGCCGATGCCGCCTTCTGGAACATTCGCTTGCCTCCGCC    AAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB635161             [                               TGGAACATTCGCTTGCCTCCGCCAAAAAAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAAACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAGATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGANGTGAATCCTCCACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB630016             [                                tgccCATTCACTTGCCTCCGCCAAAAAAAAAAAAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCACCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAGATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB633915             [                                                                                                 GAGGGGGGCGCAGCCGCCTCGCTCGTCTTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTCTCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCANGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB632556             [                                                                                                                                                                                                                             GGAGCGGCGGCCGACGAGAAGGATTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGCCCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTGGATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCATTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATC GGACAATGGCAAAAGAACAGATCTACGGATAATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGTTCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACCTGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATGTGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF323029             [                                                                                                                                                                                                                                                                                                                                                                         tcGGATTTTTGTCACTTGGAGAGGCATACAGATCGATGTCGATGCAGACCCGAACTGTACGGTGAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCTTATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTGCCGACCCTCATTCAGGACTGACATTGAAAGAATCTGCTATTAATGATGGGAAGCCTATTACAATGATGGGTGTTTTTAATGATGAAATCGAGGAAGTATCACGACAATGGCAAAAGAACAGATCTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB633916             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTGGGAATTGACAGGTCTGATGAAACTACATGCGAAGCTGTTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGGCCTGACAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGAGGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTCATCAAGTAT ACAAACTATAGATAAATTACCTG                     ]
[-] EMBL CB632557             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCCCATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCCCAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGGCCTGACAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTCATCAAATAT GGGAACTATAGATAAATTCCCTGGCAAAAAAAAAAAAAAAAAAG]
[-] EMBL CB630017             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGAAATGTTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGAATGTGATAGAGCACCCCCATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGCCCTGACAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGCCAAATGATGTAGTATGGTCTTCCTACATTTTGAGGGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACACTTGATGATTTCTC TCCTATATGACAAACTATAGATAAATTACC                       ]




>consensus_13679#0
CTCCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCCAAAAAA
AAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCAGCCGCCTCGCTCGTC
TTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTC
TCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGA
TTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGC
CCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTG
GATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGT
GAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCT
TATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCA
TTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGG
TGTTTTTAATGATGAAATCGAGGAAGTATCGGACAATGGCAAAAGAACAGATCTACGGAT
AATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGT
TCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACC
TGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATG
TGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGA
AATGGCACCAGTAGGGTATGTAGGCGTCAGTCCAAAATGCATTCTAGGCTTCAATAAGAA
CATGGGAGAGGAAATATCCCTTCGCCTACGAACTGATGACTTGAAAGGATTTAGGAAATA
TGAAAGTATCAAGAGAACTCTACTCCATGAACTTGCACACATGGTGCACTCCGAGCATGA
TGCAAATTTTTTTGCTCTTAATAAGCAGTTGAATGATGAAGCAGCTTCCTTGGACTGGAC
CAAGTCAAGAGGTCATGTGCTGAGTGGTCGCAAAATCTTCGATTCCTATGAAGACGAATT
TGTTCTGGAGCCAGACAGTGTTGTTGTTGGCCACAAACTTGGAGGAGGATCCAGTTCACT
GGCAAGTGCTCGTGTGTTGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGC
GGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAA
CACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAA
GGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATC
TTGGTCCTCAGTTTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGA
CCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTC
CTCAAATGTTGATATTCTTAGCCAGGAGTTGACGATTGATGGGAAGCAGAATGGAGAACC
TGATCCTGACGATAATGGTACTAGCAAATTTATTCCCGAACCTGTAAACAAGATGGAAGT
AGAGACTGAATTGGGAAGTAACTTCGCAGTTCAGAATTCTGAACCTGATCCTGATGATTC
CTCAAATGCTATTCTGAATAAGAAGCTGGGAACTGACAGGTCTGATGAAACTACATGCGA
AGCTGTTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAACTC
GACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCATTGA
GCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCATTGA
AATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAA
GATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAAGTC
CAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGAACT
GATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTTGGT
ACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCAT
GGCCTGAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTC
ATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCTTCC
TACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACACAC
TTGATGATTTCTCATCAAATATACAAACTATAGATAAATTACCTGGCAAAAAAAAAAAAA
AAAAAG

consensusID : consensus_13679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence 
                              [CNGGTACGCGTGGGCGNACGCGTGGGGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGGTCCTCAGTNTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGGTTGATATTCTTAGCCA]

[+] EMBL C96850               [CNGGTACGCGTGGGCGNACGCGTGGGGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTTGTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCATCTTGGGTCCTCAGTNTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGATTCCTCAAATGGTTGATATTCTTAGCCA]




>consensus_13679#1
CNGGTACGCGTGGGCGNACGCGTGGGGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAAT
GCATCAGCGGATTTAGAGAGTTCTAAAGACAGCGTTACTATACCTGGAAATGAAATTCTT
GTGCCTAACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGAC
AACACTAAGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACT
GGGGCATCTTGGGTCCTCAGTNTCTAGATCATTTACAGAACAAGATACCATCAGTCACTC
AGAGCCTGACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCC
TGATGATTCCTCAAATGGTTGATATTCTTAGCCA

consensusID : consensus_13679#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 83
fasta sequence 
                              [CCGGATTTATCTATAGTTTGTATATTTGATGAGAAATCATGAAGTGTGTTGACAGACAGTATAGAAACTATAGATAAATTACC]

[+] EMBL BM422079             [CCGGATTTATCTATAGTTTGTATATTTGATGAGAAATCATGAAGTGTGTTGACAGACAGTATAGAAACTATAGATAAATTACC]




>consensus_13679#2
CCGGATTTATCTATAGTTTGTATATTTGATGAGAAATCATGAAGTGTGTTGACAGACAGT
ATAGAAACTATAGATAAATTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13679#0      CTCCGAGTGCCGTACGGCCGCTGCCGCCTTCTGGAACATTCGCTTGCCTCCGCCAAAAAA 60
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      AAAAAAAAAAAATCCCTCCTCCCCTCTCCCCTCGAGGGGGGCGCAGCCGCCTCGCTCGTC 120
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TTCCTTCCTCCTCCACCGCCGCGCGTGCGCGAGTGCGCAGCCGCCATCGCCGTGCGCTTC 180
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TCTGCCTCCCGATCTGCGGTGCGACCGGTGTGATCGCGGAGCGGCGGCCGACGAGAAGGA 240
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TTTTTTTGAGGGAGGGGGGCAAGTGGTGCGACGCCGCTGACCTCCTTCAATTCCACCTGC 300
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CCCAATCTCGGTTGGGAATCGAATCGAAAGGAATAAGATGGAAGAGAAGAGAATAGCTTG 360
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      GATTTCGGTCATTTGGAGAGGCAGACAGCTCGATGTCGATGCAGACCCGAGCTGTACGGT 420
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      GAAGGAATTCGGGCAACTTTTGCAGGATTTGACTAGTGTTAACCCAGAGACATTGAAGCT 480
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TATTGTTCCGCAGTCTACAAACAAAGGCTCCAAGCTGATCACACCGTTTTCCGACCCTCA 540
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TTCAGTTTTGACATTGAAAGAAGCTGCTATTAGTGATGGGAAGCCTATTAGAATGATGGG 600
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGTTTTTAATGATGAAATCGAGGAAGTATCGGACAATGGCAAAAGAACAGATCTACGGAT 660
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      AATTGGATTTGAGGAGGAAGAACAACGGCTGAGGCAACGGACATCAGGCAGGCCCCAAGT 720
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TCCACTCAAACTTCCACAGGGCCAATACATCTTCTGTGATTTTCGGACACTTCACTTACC 780
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGGGATTGAGTTGAATCCTCCACCTTCAGAAGCTCTGAAAAGAATGCACATGCTAGCATG 840
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGACCCAGGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGA 900
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      AATGGCACCAGTAGGGTATGTAGGCGTCAGTCCAAAATGCATTCTAGGCTTCAATAAGAA 960
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CATGGGAGAGGAAATATCCCTTCGCCTACGAACTGATGACTTGAAAGGATTTAGGAAATA 1020
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGAAAGTATCAAGAGAACTCTACTCCATGAACTTGCACACATGGTGCACTCCGAGCATGA 1080
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGCAAATTTTTTTGCTCTTAATAAGCAGTTGAATGATGAAGCAGCTTCCTTGGACTGGAC 1140
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CAAGTCAAGAGGTCATGTGCTGAGTGGTCGCAAAATCTTCGATTCCTATGAAGACGAATT 1200
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGTTCTGGAGCCAGACAGTGTTGTTGTTGGCCACAAACTTGGAGGAGGATCCAGTTCACT 1260
consensus_13679#1      --------------------------------------------------CNGGTACGC- 9
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      GGCAAGTGCTCGTGTGTTGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGC 1320
consensus_13679#1      -GTGGGCGNACGCGTGGGGTCTGGGTCTGCTGCTTATAAGCGTTTTTTGAATGCATCAGC 68
consensus_13679#2      -----------------------------CCGGATTTATCTATAGTTTGTATATTTGATG 31
                                                    * *  * **    *  **** **   * *  

consensus_13679#0      GGATTTAGAGAGTTCTAAAGACAG-CGTTACTATACCTGGAAATGAAATTCTTGTGCCTA 1379
consensus_13679#1      GGATTTAGAGAGTTCTAAAGACAG-CGTTACTATACCTGGAAATGAAATTCTTGTGCCTA 127
consensus_13679#2      AGAAATCATGAAGTGTGTTGACAGACAGTATAGAAACTATAGATAAATTACC-------- 83
                        **  *   **  * *   ***** *  **    * **  * ** ** * *         

consensus_13679#0      ACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTA 1439
consensus_13679#1      ACACAAAATTTGAGCCTGATCCAGATGATGTTGGTCAAGATTTTTCTCAGGACAACACTA 187
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      AGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCAT 1499
consensus_13679#1      AGGTGGAGCCAGACCCAGATGATAATGATGACATGAACGTGGATGTAGGGACTGGGGCAT 247
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CTTGG-TCCTCAGTTTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCT 1558
consensus_13679#1      CTTGGGTCCTCAGTNTCTAGATCATTTACAGAACAAGATACCATCAGTCACTCAGAGCCT 307
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      GACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGAT 1618
consensus_13679#1      GACCCTGATGATATTCACCAGCAAAGCACTGCTGGTTGCCTAGAACCTGACCCTGATGAT 367
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TCCTCAAATG-TTGATATTCTTAGCCAGGAGTTGACGATTGATGGGAAGCAGAATGGAGA 1677
consensus_13679#1      TCCTCAAATGGTTGATATTCTTAGCCA--------------------------------- 394
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      ACCTGATCCTGACGATAATGGTACTAGCAAATTTATTCCCGAACCTGTAAACAAGATGGA 1737
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      AGTAGAGACTGAATTGGGAAGTAACTTCGCAGTTCAGAATTCTGAACCTGATCCTGATGA 1797
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TTCCTCAAATGCTATTCTGAATAAGAAGCTGGGAACTGACAGGTCTGATGAAACTACATG 1857
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CGAAGCTGTTGTAGAAGAATGTGGAAACAAGATGGAAGTGGAGACTGAACAGAGCAGAAA 1917
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CTCGACAATATCAAAATCTGAGCCTGATCCTGATGATCATGCTGCTAATTCAAACATCAT 1977
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGAGCTCCAGAGGATCGAAGAACCAGTGGCAGCCCTCTGTGCACGCCTCCAGAAGGCCAT 2037
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTT 2097
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TAAGATCATCAAGAATGTGATAGAGCACCCACATGATATCAAGTACAGGAGACTGCGTAA 2157
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      GTCCAATCCACAGTTCCAAAGGAGTGTGGCGAACTACAAAGCTGCAATGGAGGTCCTTGA 2217
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      ACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGACTTACTT 2277
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      GGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTC 2337
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CATGGCCTGAATCGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATT 2397
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TTCATTACTGTTGTGGGGATGCTCATATGCTGCTCTTAGGCAAATGATGTAGTATGGTCT 2457
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      TCCTACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTCTGTCAACA 2517
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      CACTTGATGATTTCTCATCAAATATACAAACTATAGATAAATTACCTGGCAAAAAAAAAA 2577
consensus_13679#1      ------------------------------------------------------------
consensus_13679#2      ------------------------------------------------------------
                                                                                   

consensus_13679#0      AAAAAAAAG 2586
consensus_13679#1      ---------
consensus_13679#2      ---------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)