cluster # 1368

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Oryza sativa
cluster # 1368 cluster # 1368 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1368#0 length = 482 sequences # 1

consensus_1368#1 length = 374 sequences # 1

consensusID : consensus_1368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [ACGGGAAGCAGCAGGGTGGTGGCGGCGGCGGGGCGGCGGCGGCGGGGGGCGGGCAGGAGCAGGCGCCGCCGGCGAGGAAGCGAGGGCGGAGCGCCGGCGACAAGGAGCAGAACCGGCTGAAGCGGCTGCTGCGGAACCGCGTGTCGGCGCAGCAGGCGCGGGAGCGGAAGAAGGCGTACATGACGGAGCTCGAGGCCAAGGCCAAGGACCTCGAGCTCCGCAATGCCGAGCTCGAGCAGCGCGTCTCCACCCTCCAGAACGAGAACAACACGCTCCGCCAGATACTCAAGAACACGACGGCGCACGCCGGCAAGAGGGGCGGCGGCGGCGGAGGCAAGGGCGGCGATGGCGGCGGCGGCGGGAAGAAGCACCATTTCACCAAGAGCTAGGAGGAGAGGGACTGCGGTGACGGCTGGCGGCGGAGGCAGGGTTGTGGTAGGAATTGAATTGGTCATCTGATCTGACCATTGGTAGGAAACATC]

[+] EMBL BP184477             [ACGGGAAGCAGCAGGGTGGTGGCGGCGGCGGGGCGGCGGCGGCGGGGGGCGGGCAGGAGCAGGCGCCGCCGGCGAGGAAGCGAGGGCGGAGCGCCGGCGACAAGGAGCAGAACCGGCTGAAGCGGCTGCTGCGGAACCGCGTGTCGGCGCAGCAGGCGCGGGAGCGGAAGAAGGCGTACATGACGGAGCTCGAGGCCAAGGCCAAGGACCTCGAGCTCCGCAATGCCGAGCTCGAGCAGCGCGTCTCCACCCTCCAGAACGAGAACAACACGCTCCGCCAGATACTCAAGAACACGACGGCGCACGCCGGCAAGAGGGGCGGCGGCGGCGGAGGCAAGGGCGGCGATGGCGGCGGCGGCGGGAAGAAGCACCATTTCACCAAGAGCTAGGAGGAGAGGGACTGCGGTGACGGCTGGCGGCGGAGGCAGGGTTGTGGTAGGAATTGAATTGGTCATCTGATCTGACCATTGGTAGGAAACATC]




>consensus_1368#0
ACGGGAAGCAGCAGGGTGGTGGCGGCGGCGGGGCGGCGGCGGCGGGGGGCGGGCAGGAGC
AGGCGCCGCCGGCGAGGAAGCGAGGGCGGAGCGCCGGCGACAAGGAGCAGAACCGGCTGA
AGCGGCTGCTGCGGAACCGCGTGTCGGCGCAGCAGGCGCGGGAGCGGAAGAAGGCGTACA
TGACGGAGCTCGAGGCCAAGGCCAAGGACCTCGAGCTCCGCAATGCCGAGCTCGAGCAGC
GCGTCTCCACCCTCCAGAACGAGAACAACACGCTCCGCCAGATACTCAAGAACACGACGG
CGCACGCCGGCAAGAGGGGCGGCGGCGGCGGAGGCAAGGGCGGCGATGGCGGCGGCGGCG
GGAAGAAGCACCATTTCACCAAGAGCTAGGAGGAGAGGGACTGCGGTGACGGCTGGCGGC
GGAGGCAGGGTTGTGGTAGGAATTGAATTGGTCATCTGATCTGACCATTGGTAGGAAACA
TC

consensusID : consensus_1368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [GCGAAGAAGGCGTACATGACGGAGCTGGAGCCAAGCCCAAGGACCTCTGAGCTCCGCAATGCCGAGCTCGAGCAGCGCGTCTCCACCCTCCAGACGAGAACAACACGCTCCAGCCAGATACTCAAGAACACGACGGCAGCACCCGGCAAGAGGGGCGGCGGCGGAGGAGGTGGAGGAGTGCAAGGGCGGCGACGGCGGCGGCGGCGGGAAGAAGCAACCATTTCACCAAGAGCTATGGAGAGGGAGTGCGGTGACGCGGCGGAGTCGGAGCCAGGTTTGTGGTAGGAATTGAATTGTTCATCTGATCTGACCATTGTTATTAGGAAACATCATCGATGTTGTTGTTGTTGTTGTTGTTGACGTTTTTCTTTTTC]

[+] EMBL BI807665             [GCGAAGAAGGCGTACATGACGGAGCTGGAGCCAAGCCCAAGGACCTCTGAGCTCCGCAATGCCGAGCTCGAGCAGCGCGTCTCCACCCTCCAGACGAGAACAACACGCTCCAGCCAGATACTCAAGAACACGACGGCAGCACCCGGCAAGAGGGGCGGCGGCGGAGGAGGTGGAGGAGTGCAAGGGCGGCGACGGCGGCGGCGGCGGGAAGAAGCAACCATTTCACCAAGAGCTATGGAGAGGGAGTGCGGTGACGCGGCGGAGTCGGAGCCAGGTTTGTGGTAGGAATTGAATTGTTCATCTGATCTGACCATTGTTATTAGGAAACATCATCGATGTTGTTGTTGTTGTTGTTGTTGACGTTTTTCTTTTTC]




>consensus_1368#1
GCGAAGAAGGCGTACATGACGGAGCTGGAGCCAAGCCCAAGGACCTCTGAGCTCCGCAAT
GCCGAGCTCGAGCAGCGCGTCTCCACCCTCCAGACGAGAACAACACGCTCCAGCCAGATA
CTCAAGAACACGACGGCAGCACCCGGCAAGAGGGGCGGCGGCGGAGGAGGTGGAGGAGTG
CAAGGGCGGCGACGGCGGCGGCGGCGGGAAGAAGCAACCATTTCACCAAGAGCTATGGAG
AGGGAGTGCGGTGACGCGGCGGAGTCGGAGCCAGGTTTGTGGTAGGAATTGAATTGTTCA
TCTGATCTGACCATTGTTATTAGGAAACATCATCGATGTTGTTGTTGTTGTTGTTGTTGA
CGTTTTTCTTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1368#0      ACGGGAAGCAGCAGGGTGGTGGCGGCGGCGGGGCGGCGGCGGCGGGGGGCGGGCAGGAGC 60
consensus_1368#1      ------------------------------------------------------------
                                                                                  

consensus_1368#0      AGGCGCCGCCGGCGAGGAAGCGAGGGCGGAGCGCCGGCGACAAGGAGCAGAACCGGCTGA 120
consensus_1368#1      ------------------------------------------------------------
                                                                                  

consensus_1368#0      AGCGGCTGCTGCGGAACCGCGTGTCGGCGCAGCAGGCGCGGGAGCGGAAGAAGGCGTACA 180
consensus_1368#1      -------------------------------------------GCG-AAGAAGGCGTACA 16
                                                                 *** *************

consensus_1368#0      TGACGGAGCTCGAGGCCAAGGCCAAGGACCTC-GAGCTCCGCAATGCCGAGCTCGAGCAG 239
consensus_1368#1      TGACGGAGCT-GGAGCCAAGCCCAAGGACCTCTGAGCTCCGCAATGCCGAGCTCGAGCAG 75
                      ********** *  ****** *********** ***************************

consensus_1368#0      CGCGTCTCCACCCTCCAGAACGAGAACAACACGCTCC-GCCAGATACTCAAGAACACGAC 298
consensus_1368#1      CGCGTCTCCACCCTCCAGA-CGAGAACAACACGCTCCAGCCAGATACTCAAGAACACGAC 134
                      ******************* ***************** **********************

consensus_1368#0      GGCGCACGCCGGCAAGAGGGGCGGCGGCGGCGGAGG----------CAAGGGCGGCGATG 348
consensus_1368#1      GGCAGCACCCGGCAAGAGGGGCGGCGGCGGAGGAGGTGGAGGAGTGCAAGGGCGGCGACG 194
                      ***     ********************** *****          ************ *

consensus_1368#0      GCGGCGGCGGCGGGAAGAAGCA-CCATTTCACCAAGAGCTAGGAGGAGAGGGACTGCGGT 407
consensus_1368#1      GCGGCGGCGGCGGGAAGAAGCAACCATTTCACCAAGAGCTAT--GGAGAGGGAGTGCGGT 252
                      ********************** ******************   ********* ******

consensus_1368#0      GACG-GCTGGCGGCGGAGGCAGGGTTGTGGTAGGAATTGAATTGGTCATCTGATCTGACC 466
consensus_1368#1      GACGCGGCGGAGTCGGAGCCAGGTTTGTGGTAGGAATTGAATTGTTCATCTGATCTGACC 312
                      **** *  ** * ***** **** ******************** ***************

consensus_1368#0      ATTGGTA---GGAAACATC----------------------------------------- 482
consensus_1368#1      ATTGTTATTAGGAAACATCATCGATGTTGTTGTTGTTGTTGTTGTTGACGTTTTTCTTTT 372
                      **** **   *********                                         

consensus_1368#0      --
consensus_1368#1      TC 374