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Oryza sativa
cluster # 13685 cluster # 13685       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13685#0 length = 1342 sequences # 2  
consensus_13685#1 length = 1265 sequences # 7  
consensus_13685#2 length = 461 sequences # 3  
consensus_13685#3 length = 275 sequences # 1  

consensusID : consensus_13685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1342
fasta sequence
                              [CCATCGCAATCCATCAAGCAAATCTCACTAGCTAGCTAGCTATCTCAGCTCACTCTCTCAGTAGCCACTGATCAGAAGAAGAGCAAGAGACGCCAATTAAGCTAGCTAGCTAAGCTGGTTAATTGCCATGGGTAGTGGTAATAAGCTCGCTGCCACCGTGGTCGTCGTCACCTTCGCGGTGCTCATGGCGGCGGTGACGACGACGTGCCAAGCAGCTTACGGGCCACCCAACCCTGCTTCGTGCGGGCTCAAGGTCGGTTACTACTACGCCAAGTGCCCGCATGCCGAGGAAATCGTCAAGAACGTCGTCGGCGCCGCCATCCTCCACAACCCCGGCGTCGGCGCTGGCCTCATCCGCATGCTCTTCCATGACTGCTTCGTTGAGGGATGTGATGCGTCCGTGCTGCTCGACCCGACGCCGGCGAACCCGCAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGTTACGAGGTGATCGACGCCGCCAAGGCGGCCGTCGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACATCGTCGCCTTCGCCGCGCGCGACGCCTCCTTCTTCCTCAGCAACAGCAGGGTCGCGTTCCAGATGCCCGCGGGGCGCCTCGACGGGCGCTACTCCAACGCGTCGCGCGCCCTCGACTTCCTCCCGCCGCCCAAGTTCAACCTCGGCCAGCTCGTCGCCAACTTCGCCACCAAGGGGCTCGGCATGGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCGACTCCCACTGCTCGTCCTTCGTCCCCGACCGCCTCGCCGTCCCCTCCGACATGGAGCCCCCGCTCGCCGCCATGCTGAGGACGCAGTGCCCGGCGAAGCCGAGCTCAGGCAACGACCCCACGGTGGTGCAGGACGTCGTGACGCCCAACAAGCTGGACAACCAGTACTACAAGAACGTGCTCGCGCACAGGGTGCTCTTCACCTCCGACGCGTCGCTCCTGGCGTCGCCGGCGACGGCGAAGATGGTGGTGGACAATGCCAACATCCCCGGGTGGTGGGAGGATAGGTTCACGAAGGCCATGGTGAAGATGGCCAGCATCGAGGTGAAGACC-GGCGGCAATGGCGAGATCAGGAGGAACTGCCGGGCTGTCAATCACTAGCTCATACAAATTTACGAGCATGCATGTTTAATTAATTTATTCATGCATATCTATGTTCTATCGTTAACTGCTGCATCTTGTCTGTTTATTCTTTCTTTTCCACTGATTTCATTTCAAGTCAAATGAGGCTTATGTACCATTATATTGTATCATGTTTGAATATAATAAAATAACTTTCTTACGGACAAAAAA]

[+] EMBL AK064619             [CCATCGCAATCCATCAAGCAAATCTCACTAGCTAGCTAGCTATCTCAGCTCACTCTCTCAGTAGCCACTGATCAGAAGAAGAGCAAGAGACGCCAATTAAGCTAGCTAGCTAAGCTGGTTAATTGCCATGGGTAGTGGTAATAAGCTCGCTGCCACCGTGGTCGTCGTCACCTTCGCGGTGCTCATGGCGGCGGTGACGACGACGTGCCAAGCAGCTTACGGGCCACCCAACCCTGCTTCGTGCGGGCTCAAGGTCGGTTACTACTACGCCAAGTGCCCGCATGCCGAGGAAATCGTCAAGAACGTCGTCGGCGCCGCCATCCTCCACAACCCCGGCGTCGGCGCTGGCCTCATCCGCATGCTCTTCCATGACTGCTTCGTTGAGGGATGTGATGCGTCCGTGCTGCTCGACCCGACGCCGGCGAACCCGCAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGTTACGAGGTGATCGACGCCGCCAAGGCGGCCGTCGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACATCGTCGCCTTCGCCGCGCGCGACGCCTCCTTCTTCCTCAGCAACAGCAGGGTCGCGTTCCAGATGCCCGCGGGGCGCCTCGACGGGCGCTACTCCAACGCGTCGCGCGCCCTCGACTTCCTCCCGCCGCCCAAGTTCAACCTCGGCCAGCTCGTCGCCAACTTCGCCACCAAGGGGCTCGGCATGGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCGACTCCCACTGCTCGTCCTTCGTCCCCGACCGCCTCGCCGTCCCCTCCGACATGGAGCCCCCGCTCGCCGCCATGCTGAGGACGCAGTGCCCGGCGAAGCCGAGCTCAGGCAACGACCCCACGGTGGTGCAGGACGTCGTGACGCCCAACAAGCTGGACAACCAGTACTACAAGAACGTGCTCGCGCACAGGGTGCTCTTCACCTCCGACGCGTCGCTCCTGGCGTCGCCGGCGACGGCGAAGATGGTGGTGGACAATGCCAACATCCCCGGGTGGTGGGAGGATAGGTTCACGAAGGCCATGGTGAAGATGGCCAGCATCGAGGTGAAGACC GGCGGCAATGGCGAGATCAGGAGGAACTGCCGGGCTGTCAATCACTAGCTCATACAAATTTACGAGCATGCATGTTTAATTAATTTATTCATGCATATCTATGTTCTATCGTTAACTGCTGCATCTTGTCTGTTTATTCTTTCTTTTCCACTGATTTCATTTCAAGTCAAATGAGGCTTATGTACCATTATATTGTATCATGTTTGAATATAATAAAATAACTT                ]
[+] EMBL AU098345             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAACTTCGCCACCAAGGGGCTCGGCATGGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCGACTCCCACTGCTCGTCCTTCGTCCCCGACCGCCTCGCCGTCCCCNCCGACATGGAGCCCCCGCTCGCCGCCATGCTGAGGACGCA TGCCCGGCGAA NAGNCTTCAGGCAACGACCCCACGGTGGTGCAGGACGTCGTGACGCCCAACAAGCTGGACAACCAGTACTACAAGAACGTGCTCGCGCACAGGGTGCTCTTCACCTCCGACGCGTCGCTCCTGGCGTCGCCGGCGACGGGAAAGATGGTGGTGGACAATGCCAACATCCCCGGGTGGTGGGAGGATAGGTTCACGAAGGCCATGGTGAAGATGGCCAGCATCGAGGTGAAGACCGGGCGGCAATGGCGAGATCAGGAGGAACTGCCGGGCTGTCAATCACTAGCTCATACAAATTTACGAGCATGCATGTTTAATTAATTTATTCATGCATATCTATGTTCTATCGTTAACTGCTGCATCTTGTCTGTTTATTCTTTCTTTTCCACTGATTTCATTTCAAGTCAAATGAGGCTTATGTACCATTATATTGTATCATGTTTGAATATAATAAAATAACTTTCTTACGGACAAAAAA]


>consensus_13685#0 CCATCGCAATCCATCAAGCAAATCTCACTAGCTAGCTAGCTATCTCAGCTCACTCTCTCA GTAGCCACTGATCAGAAGAAGAGCAAGAGACGCCAATTAAGCTAGCTAGCTAAGCTGGTT AATTGCCATGGGTAGTGGTAATAAGCTCGCTGCCACCGTGGTCGTCGTCACCTTCGCGGT GCTCATGGCGGCGGTGACGACGACGTGCCAAGCAGCTTACGGGCCACCCAACCCTGCTTC GTGCGGGCTCAAGGTCGGTTACTACTACGCCAAGTGCCCGCATGCCGAGGAAATCGTCAA GAACGTCGTCGGCGCCGCCATCCTCCACAACCCCGGCGTCGGCGCTGGCCTCATCCGCAT GCTCTTCCATGACTGCTTCGTTGAGGGATGTGATGCGTCCGTGCTGCTCGACCCGACGCC GGCGAACCCGCAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGTTACGA GGTGATCGACGCCGCCAAGGCGGCCGTCGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGC CGACATCGTCGCCTTCGCCGCGCGCGACGCCTCCTTCTTCCTCAGCAACAGCAGGGTCGC GTTCCAGATGCCCGCGGGGCGCCTCGACGGGCGCTACTCCAACGCGTCGCGCGCCCTCGA CTTCCTCCCGCCGCCCAAGTTCAACCTCGGCCAGCTCGTCGCCAACTTCGCCACCAAGGG GCTCGGCATGGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCGACTCCCACTG CTCGTCCTTCGTCCCCGACCGCCTCGCCGTCCCCTCCGACATGGAGCCCCCGCTCGCCGC CATGCTGAGGACGCAGTGCCCGGCGAAGCCGAGCTCAGGCAACGACCCCACGGTGGTGCA GGACGTCGTGACGCCCAACAAGCTGGACAACCAGTACTACAAGAACGTGCTCGCGCACAG GGTGCTCTTCACCTCCGACGCGTCGCTCCTGGCGTCGCCGGCGACGGCGAAGATGGTGGT GGACAATGCCAACATCCCCGGGTGGTGGGAGGATAGGTTCACGAAGGCCATGGTGAAGAT GGCCAGCATCGAGGTGAAGACCGGCGGCAATGGCGAGATCAGGAGGAACTGCCGGGCTGT CAATCACTAGCTCATACAAATTTACGAGCATGCATGTTTAATTAATTTATTCATGCATAT CTATGTTCTATCGTTAACTGCTGCATCTTGTCTGTTTATTCTTTCTTTTCCACTGATTTC ATTTCAAGTCAAATGAGGCTTATGTACCATTATATTGTATCATGTTTGAATATAATAAAA TAACTTTCTTACGGACAAAAAA



consensusID : consensus_13685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1265
fasta sequence
                              [GGCAGTCCATCGATCATCTCTTC-TCTTCCAGCAAGGAAGCAGCA-GAG----AA-GA-CAATGGCAGCATCGGCCATGAAGCTCGCCATGGCGGTGGCGTGCGCGCTGGCGCTCGCGTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCC-GGCATCG-GCGCC-GGACTCATCC-GCCTCGTC-TTCCACGACTGCTTCGTCGAGGGATG-TGATGGCTCGGTGCTCCTGGACCCAACTCCGGCGAACCCGAAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCCGCCAAGGACGCCGTCGAGAAGGTCTGCCCCGGCG-TGGTC-TCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACGCCGCCTACTTCCTCAGCAGATTCAGGGTCAAGATCAACGTCCCAGGTGGACGCCTCGATGGCCGCCGCTCCCTCGACTCCGACGCCCTCAACAACCTGCCGCCGCCCAACTTCAACGTGAACCAGCTCATCGGCGCGTTCGCCGCCAAGGGCCTCGACGCCGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCTCGGACCGCGTCGCCGCGCCCTCCGACATCAACGGCGGCTTCGCCAACTTCCTCAAGCAGAGGTGCCCGGCCAACCCGACCTCCAGCAACGACCCGACGGTGAACCAGGACGCCGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCACTGCAGGGTCGTCAACTAATCATCATCGGGTCAATCCGACTAATGCAAACCCATCGATCTATACGTTCATTCGTTTGTTTTCCAGGACTTTGTTCTTCTGATCGATTCGACATGACGTACTACATTTCTTGGTTCTTTTGGCCGTTGGTACGGCTTGCATTATCCCTCTAAAACCACCATGACAATGAACTGTACTTGAATAAATTCATCTCTCATAATAATTAATACAAGCCTCATCTCTTTTTTATTGGTAAAAAAA]

[+] EMBL AU184428             [GGCAGTCCATCGATCATCTCTTC TCTTCCAGCAAGGAAGCAGCA GAG    AA GA CAATGGCAGCATCGGCCATGAAGCTCGCCATGGCGGTGGCGTGCGCGCTGGCGCTCGCGTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCC GGCATCG GCGCC GGACTCATCC GCCTCGTC TTCCACGACTGCTTCGTCGAGGGATG TGATGGCTCGGTGCTCCTGGACCCAACTCCGGCGAACCCGAAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCCGCCAAGGACGCCGTCGAGAAGGTCTGCCCCGGCG TGGTC TCGTGCGCCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK073767             [      CCAACAATCACATCATCATCTCAGAGCAA  AAGCAGCAGGAGCTGAAACGAGCAATGGCAGCATCGGGCATGAAGCTCGCCGTGGCGGTGGCGTGCGCGCTGGCGCTCGCGTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCC GGCATCG GCGCC GGACTCATCC GCCTCGTC TTCCACGACTGCTTCGTCGAGGGATG TGATGGCTCGGTGCTCCTGGACCCAACTCCGGCGAACCCGAAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCCGCCAAGGACGCCGTCGAGAAGGTCTGCCCCGGCG TGGTC TCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACGCCGCCTACTTCCTCAGCAGATTCAGGGTCAAGATCAACGTCCCAGGTGGACGCCTCGATGGCCGCCGCTCCCTCGACTCCGACGCCCTCAACAACCTGCCGCCGCCCAACTTCAACGTGAACCAGCTCATCGGCGCGTTCGCCGCCAAGGGCCTCGACGCCGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCTCGGACCGCGTCGCCGCGCCCTCCGACATCAACGGCGGCTTCGCCAACTTCCTCAAGCAGAGGTGCCCGGCCAACCCGACCTCCAGCAACGACCCGACGGTGAACCAGGACGCCGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCACTGCAGGGTCGTCAACTAATCATCATCGGGTCAGTCCGACTAATGCAAACCCATCGATCTATACGTTCATTCGTTTGTTTTCCAGGACTTTGTTCTTCTGATCGATTCGACATGACGTACTACATTTCTTGGTTCTTTTGGCCGTTGGTACGGCTTGCATTATCCCTCTAAAACCACCATGACAATGAACTGTACTTGAATAAATTCATCTCTCATAATAATTAATACAAGCCTCATCTCT                  ]
[+] EMBL OSR28771A            [             TCATCTCTTC TCTTCCAGCAAGGAAGCAGCA GAG    AA GA CAATGGCAGNATCGGCCATGAAGCTCGCCATGGCGGTGGTGTGCGCGCTGGCGCTCGCNTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCC GGCATCGNGC AC GGACTCATCC GCCTCGTC TTCCACGACTGCTTCGTCGAGGGATG TGATGGCTCGGTGCTCCTGGACCCAACTCCGGCGAACCCGAAGCCGGAGAAGCTCAGCCCGNCCAACATGCCCAGNCTCCGNGGCTTCGAGGTGATCGACGNCG CAAGGACGNCGTCGAGAAGGTCTGCCCCGGCGTTGGTCTTCGTGCGCCGACATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU032371             [                 CTCTTC TCTTCCAGCAAGGAAGCAGCA GAG    AA GA CAATGGCAGCATCGGCCATGAAGCTCGCCATGGCGGTGGCGTGCGCNCTGGCGCTCGCGTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTNGAGGCCATCGTNAGGTACGAGGTGAAGAAGTTCGTCTACAAGGACGCCGGGCATCG G GCCGGGACTCATCCGGCTTCGTCTTTCCAAGACTGCTTCGTCGAGGGATGTTNATGGCTCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C22701               [                     tcatctcagAGCAA  AAGCAGCAGGAGCTGAAACGAGCAATGGCAGCATCGGGCATGAAGCTCGCCGTGGCGGTGGCGTGCGCGCTGGCGCTCGCTTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCNTGGAGGCCATCGTNAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCC GGCATCG G GCC GGACTCATCC GCCTCGTC TTCCACGACTGCTTCGTCGAGGGATG TNATGGCTCGGTGCTCCTGGACCCAACTCCGGCGAACCCGAAGCCGGAGAAGNTCAGCCCGCCCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C19115               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTTCGCAAAGNCGTTCGTCAAGATGGCATCCGTCGNTGTCAAGACCGGCTACCCCGGCAAGATCAGGAGGCACTGCAGGGTCGTCAACTAATCATCATCGGGTCAATCCGACTAATGCAAACCCATCGATCTATACGTTCATTCGTTTGTTTTCCAGGACTTTGTTCTTCTGATCGATTCGACATGACGTACTACATTTCTTGGTTCTTTTGGCCGTTGGTACGGCTTGCATTATCCCTCTAAAACCACCATGACAATGAACTGTACTTGAATAAATTCATCTCTCATAATAATTAATACAAGCCTCATCTCTTTTTTATTGGTAAAAAAA]
[+] EMBL C96868               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTAATCATCATNGGGTCAATCCGACTAATGCAAACCCATCGATCTATACGTTCATTCGTNTGTTTTCCAGGACTTTGTTCNTCTGANCGANTCGACATGACGTACTACATTTCTTGGTTCTTTTGGCCGTTGGTACGGCTTGCATNATCCCTCTAAAACCACCATGACANTGAACTGTACATGGATAAAATCATCTCTCATAATAATTAAAACAAGCCTCATCTCTNNTTTATTGNTAAga   ]


>consensus_13685#1 GGCAGTCCATCGATCATCTCTTCTCTTCCAGCAAGGAAGCAGCAGAGAAGACAATGGCAG CATCGGCCATGAAGCTCGCCATGGCGGTGGCGTGCGCGCTGGCGCTCGCGTCGGCGTGCC ACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGG ACGAGGTGAAGAAGTTCGTCTACAAGGACGCCGGCATCGGCGCCGGACTCATCCGCCTCG TCTTCCACGACTGCTTCGTCGAGGGATGTGATGGCTCGGTGCTCCTGGACCCAACTCCGG CGAACCCGAAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGCTTCGAGG TGATCGACGCCGCCAAGGACGCCGTCGAGAAGGTCTGCCCCGGCGTGGTCTCGTGCGCCG ACATCGTCGCCTTCGCCGCCCGCGACGCCGCCTACTTCCTCAGCAGATTCAGGGTCAAGA TCAACGTCCCAGGTGGACGCCTCGATGGCCGCCGCTCCCTCGACTCCGACGCCCTCAACA ACCTGCCGCCGCCCAACTTCAACGTGAACCAGCTCATCGGCGCGTTCGCCGCCAAGGGCC TCGACGCCGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCCGCTCCCACTGCT CCTCCTTCGTCTCGGACCGCGTCGCCGCGCCCTCCGACATCAACGGCGGCTTCGCCAACT TCCTCAAGCAGAGGTGCCCGGCCAACCCGACCTCCAGCAACGACCCGACGGTGAACCAGG ACGCCGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGG TGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGG ACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGG CATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCACTGCAGGGTCGTCA ACTAATCATCATCGGGTCAATCCGACTAATGCAAACCCATCGATCTATACGTTCATTCGT TTGTTTTCCAGGACTTTGTTCTTCTGATCGATTCGACATGACGTACTACATTTCTTGGTT CTTTTGGCCGTTGGTACGGCTTGCATTATCCCTCTAAAACCACCATGACAATGAACTGTA CTTGAATAAATTCATCTCTCATAATAATTAATACAAGCCTCATCTCTTTTTTATTGGTAA AAAAA



consensusID : consensus_13685#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 461
fasta sequence
                              [CGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCNCTGCAGGGTCGTCAACTAATCATCTATATATTGAATTCAACGTGTGTTCCATCAAATTTTCTCATTGCTACGTTTTGTTTTTGTATTTATTCGTTCATTCTTTTGTGTAGTGTATTTTGTGTTGATTATTATATATGTCCTCTCCTATTATGTAATTGTGTAATATGACACTTTATCATGTAATAACATTGGAATATATTTTTGGAGTAAATTTCCCNAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU173827             [CGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCACTGCAGGGTCGTCAACTAATCATCTATATATTGAATTCAACGTGTGTTCCATCAAATTTTCTCATTGCTACGTTTTGTTTTTGTATTTATTCGTTCATTCTTTTGTGTAGTGTATTTTGTGTTGATTATTATATATGTCCTCTCCTATTATGTAATTGTGTAATATGACACTTTATCATGTAATAACATTGGAATATATTTTTGGAGTAAAaaaa                        ]
[+] EMBL AU184429             [                       ACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTNTTNGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTNGTCAANATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCNCTGCAGGGTCGTCAACTAATCATCTATATATTGAATTCAACGTGTGTTCCATCAAATTTTNTCATTGCTACGTTTTGTTTTTGTATTTATTCGTTCATTCTTTTGTGTAGTGTATTTTGTGTTGATTATTATATATGTCCTCTCCTATTATGTAATTGTGTAATATGACNCTTTATCATGTAATAACATTGGAATATATTTTTGGAGTAAATTTCCCNAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031963             [                                                                                                                                                                                           GTCAAGACCGGNTACCCCGGCGAGNTCAGGAGGCNCTGCAGGNTCGTNAANTAATCATCTATATATTGAATNCAACGTGTGTTCCATCAAATTTTCNCATTGCTACGTTTTGTTTTTGTATTTATTCGTTCATTCTTTTGTGTAGTGTATTTTGTGTTGATTATTATATATGTCCTCTCCTATTATGTAATTGTGTAATATGACACTTTATCATGTAATAACATTGGAATATATTTTTGGAGTAAATTTCACAAAAAAAAAAA           ]


>consensus_13685#2 CGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCT CTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAA CGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGGCATC CGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCNCTGCAGGGTCGTCAACTA ATCATCTATATATTGAATTCAACGTGTGTTCCATCAAATTTTCTCATTGCTACGTTTTGT TTTTGTATTTATTCGTTCATTCTTTTGTGTAGTGTATTTTGTGTTGATTATTATATATGT CCTCTCCTATTATGTAATTGTGTAATATGACACTTTATCATGTAATAACATTGGAATATA TTTTTGGAGTAAATTTCCCNAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13685#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence
                              [TCATCTCAGAGCAAAAGCAGCAGGAGCTGAAACGAGCAATGGCAGCATCGGGCATGAAGCTCGCCGTGGCGGTGGCGTGCGCGCTGGCGCTCGCNTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGNNTGGAGGCCATCGTNAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCCGGCATCGGGCCGGACTCATCCGCCTCGTCTTCCACGACTTCTTTCGTCGAGGGATTTTATNGCTCGGTGCTTCTTGGC]

[+] EMBL OSC5471              [TCATCTCAGAGCAAAAGCAGCAGGAGCTGAAACGAGCAATGGCAGCATCGGGCATGAAGCTCGCCGTGGCGGTGGCGTGCGCGCTGGCGCTCGCNTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGNNTGGAGGCCATCGTNAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCCGGCATCGGGCCGGACTCATCCGCCTCGTCTTCCACGACTTCTTTCGTCGAGGGATTTTATNGCTCGGTGCTTCTTGGC]


>consensus_13685#3 TCATCTCAGAGCAAAAGCAGCAGGAGCTGAAACGAGCAATGGCAGCATCGGGCATGAAGC TCGCCGTGGCGGTGGCGTGCGCGCTGGCGCTCGCNTCGGCGTGCCACGGCCTGCAGCTGG GCTACTACAAGCAGTCGTGCCCCCGNNTGGAGGCCATCGTNAGGGACGAGGTGAAGAAGT TCGTCTACAAGGACGCCGGCATCGGGCCGGACTCATCCGCCTCGTCTTCCACGACTTCTT TCGTCGAGGGATTTTATNGCTCGGTGCTTCTTGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      CCATCGCAATCCATCAAGCAAATCTCACTAGCTAGCTAGCTATCTCAGCTCACTCTCTCA 60
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GTAGCCACTGATCAGAAGAAGAGCAAGAGACGCCAATTAAGCTAGCTAGCTAAGCTGGTT 120
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      AATTGCCATGGGTAGTGGTAATAAGCTCGCTGCCACCGTGGTCGTCGTCACCTTCGCGGT 180
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GCTCATGGCGGCGGTGACGACGACGTGCCAAGCAGCTTACGGGCCACCCAACCCTGCTTC 240
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GTGCGGGCTCAAGGTCGGTTACTACTACGCCAAGTGCCCGCATGCCGAGGAAATCGTCAA 300
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GAACGTCGTCGGCGCCGCCATCCTCCACAACCCCGGCGTCGGCGCTGGCCTCATCCGCAT 360
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GCTCTTCCATGACTGCTTCGTTGAGGGATGTGATGCGTCCGTGCTGCTCGACCCGACGCC 420
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GGCGAACCCGCAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGTTACGA 480
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GGTGATCGACGCCGCCAAGGCGGCCGTCGAGGCGGCCTGCCCGGGCGTCGTCTCCTGCGC 540
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      CGACATCGTCGCCTTCGCCGCGCGCGACGCCTCCTTCTTCCTCAGCAACAGCAGGGTCGC 600
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GTTCCAGATGCCCGCGGGGCGCCTCGACGGGCGCTACTCCAACGCGTCGCGCGCCCTCGA 660
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      CTTCCTCCCGCCGCCCAAGTTCAACCTCGGCCAGCTCGTCGCCAACTTCGCCACCAAGGG 720
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      GCTCGGCATGGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCGACTCCCACTG 780
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ------------------------------------------------------------
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      CTCGTCCTTCGTCCCCGACCGCCTCGCCGTCCCCTCCGACATGGAGCCCCCGCTCGCCGC 840
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      -------------------------------------------------GGCAGTCCATC 11
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      CATGCTGAGGACGCAGTGCCCGGCGAAGCCGAGCTCAGGCAACGACCCCACGGTGGTGCA 900
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      GATCATCTCTTCTCTTCCAGCAAGGAAGCAGCAGAGAAGA-CAATGGCAGCATCGGCCAT 70
consensus_13685#3      -----TCATCTCAGAGCAAAAGCAGCAGGAGCTGAAACGAGCAATGGCAGCATCGGGCAT 55
consensus_13685#0      GGACGTCGTGACGCCCAACAAGCTGGACAACCAGTACTACAAGAACGTGCTCGCGCACAG 960
consensus_13685#2      ------CGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAA 54
                             *    *              *  * * *         *  *      **  ** 

consensus_13685#1      GAAGCTCGCCATGGCGGTGGCGTGCGCGCTGGCGCTCGCGTCGGCGTGCCACGGCCTGCA 130
consensus_13685#3      GAAGCTCGCCGTGGCGGTGGCGTGCGCGCTGGCGCTCGCNTCGGCGTGCCACGGCCTGCA 115
consensus_13685#0      GGTGCTCTTCACCTCCGACGCGTCGCTCCTGGCGTCGCCGGCGACG-GCGAAGA--TGGT 1017
consensus_13685#2      GGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACG-GCGAAGA--TGGT 111
                       *  ****  *    * *  ***      *** **    *  ** ** ** * *   **  

consensus_13685#1      GCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGGACGAGGTGAA 190
consensus_13685#3      GCTGGGCTACTACAAGCAGTCGTGCCCCCGNNTGGAGGCCATCGTNAGGGACGAGGTGAA 175
consensus_13685#0      GGTGGACAATGCCAACATCCCCGGGTGGTGGGAGGATAGGTTCACGAAGGCCATGGTGAA 1077
consensus_13685#2      GTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAA 171
                       *  ** * *   ***     *  *     *   ***     **   * **     ** **

consensus_13685#1      GAAG---TTCGTCTACAAGGACGCCGGCATCGGCGCCGGACTCA------TCCGCCTCGT 241
consensus_13685#3      GAAG---TTCGTCTACAAGGACGCCGGCATCGG-GCCGGACTCA------TCCGCCTCGT 225
consensus_13685#0      GATGGCCAGCATCGAGGTGAAGACCGGCGGCAATGGCGAGATCAGGAGGAACTGCCGGGC 1137
consensus_13685#2      GATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCNCTGCAGGGT 231
                       ** *     * **       *  *****  *   * **   ***       * **   * 

consensus_13685#1      CTTCCACGACTGCTT-CGTCGAGGGATGTGATGGCTCGGTGCTCCTGGACCCAACTCCGG 300
consensus_13685#3      CTTCCACGACTTCTTTCGTCGAGGGATTTTATNGCTCGGTGCTTCTTGGC---------- 275
consensus_13685#0      TGTCAATCACTAGCT-CATACA---AATTTA-CGAGCA-TGCATGTTTAATTAATTTATT 1191
consensus_13685#2      CGTCAACTAATCATC-TATATATTGAATTCAACGTGTG-TTC-CATCAAATTTTCTCATT 288
                         ** *  * *       *  *   *  * *  *     * *   *              

consensus_13685#1      CGAACCCGAAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGCTTCGAGG 360
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      CATGCATATC-----TATGTTCTATCGTTAACTGCTGCATCTTGTCTGTTTATTCTTTCT 1246
consensus_13685#2      GCTACGTTTTGTTTTTGTATTTATTCGTTCATTCTTTTGTGTAGTGTATTT-TGTGTTGA 347
                                                                                   

consensus_13685#1      TGATCGACGCCGCCAAGGACGCCGTCGAGAAGGTCTGCCCCGGCGTGGTCTCGTGCGCCG 420
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      TTTCCACTGATTTCATTTCAAGTCAAATGA--GGCTTATGTACCATTATATTGTATCATG 1304
consensus_13685#2      TTATTATATATGTCCTCTCCTATTATGTAATTGTGTAATATGACACTTTATCATGTAATA 407
                                                                                   

consensus_13685#1      ACATCGTCGCCTTCGCCGCCCGCGACGCCGCCTACTTCCTCAGCAGATTCAGGGTCAAGA 480
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ---TTTGAATATAAT---AAAATAACTTTCTTACGGACAAAAAA---------------- 1342
consensus_13685#2      ACATTGGAATATATTTTTGGAGTAAATTTCCCNAAAAAAAAAAAAAAAAAAAAA------ 461
                                                                                   

consensus_13685#1      TCAACGTCCCAGGTGGACGCCTCGATGGCCGCCGCTCCCTCGACTCCGACGCCCTCAACA 540
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ACCTGCCGCCGCCCAACTTCAACGTGAACCAGCTCATCGGCGCGTTCGCCGCCAAGGGCC 600
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      TCGACGCCGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCCGCTCCCACTGCT 660
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      CCTCCTTCGTCTCGGACCGCGTCGCCGCGCCCTCCGACATCAACGGCGGCTTCGCCAACT 720
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      TCCTCAAGCAGAGGTGCCCGGCCAACCCGACCTCCAGCAACGACCCGACGGTGAACCAGG 780
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ACGCCGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGG 840
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      TGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGG 900
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGG 960
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      CATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCACTGCAGGGTCGTCA 1020
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      ACTAATCATCATCGGGTCAATCCGACTAATGCAAACCCATCGATCTATACGTTCATTCGT 1080
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      TTGTTTTCCAGGACTTTGTTCTTCTGATCGATTCGACATGACGTACTACATTTCTTGGTT 1140
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      CTTTTGGCCGTTGGTACGGCTTGCATTATCCCTCTAAAACCACCATGACAATGAACTGTA 1200
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      CTTGAATAAATTCATCTCTCATAATAATTAATACAAGCCTCATCTCTTTTTTATTGGTAA 1260
consensus_13685#3      ------------------------------------------------------------
consensus_13685#0      ------------------------------------------------------------
consensus_13685#2      ------------------------------------------------------------
                                                                                   

consensus_13685#1      AAAAA 1265
consensus_13685#3      -----
consensus_13685#0      -----
consensus_13685#2      -----
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)