Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13686 cluster # 13686       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13686#0 length = 733 sequences # 11  
consensus_13686#1 length = 351 sequences # 1  
consensus_13686#2 length = 205 sequences # 1  

consensusID : consensus_13686#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 733
fasta sequence
                              [GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAACCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG-ACGTGCT-CCGCTCGATGCAGCACGAG-CCCGAGGTG-ATGTTCGAGGTGCTC-AAGCAGAGGACCGACGGCG-CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT-CGGCCGCCGGCGCGGCGGAGGAGGATGACG-ACG-AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG-AGGCAGCCATCGCCGGCTTCTT-GGTGTTCA-CGCG-AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG-AGC-AGT-CGTCGTCG-CCGTCGTGTT-CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA]

[+] EMBL CB653666             [GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAACCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG ACGTGCT CCGCTCGATGCAGCACGAG CCCGAGGTG ATGTTCGAGGTGCTC AAGCAGAGGACCGACGGCG CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT CGGCCGCCGGCGCGGCGGAGGAGGATGACT ACC AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTT                        ]
[-] EMBL CB678671             [                                                       caCAACCTGTTCGGCGGTCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG ACGTGCT CCGCTCGATGCAGCACGAG CCCGAGGTG ATGTTCGAGGTGCTC AAGCAGAGGACCGACGGCG CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT CGGCCGCCGGCGCGGCGGAGGAGGATGACG ACG AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATCTCTTCAGGGAA                                              ]
[+] EMBL AU056473             [                                                                                                                                          GGGGCCTTCGTGCGCCGAACGTGCTCCCGCTCGATGCAGCACGAGCCCCGAGGTGAATGTTCGAGGTGCTCAAAGCAGAGGACCGACGGCGCCCACCGCCGCCGCGCTCGCCAGGGCGTTCNGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGTNCGGCCGCCGGCGCGGCGGAGGAGGATGACGAACGAAGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAA     ]
[-] EMBL OSS13230A            [                                                                                                                                                                                                                                                                                ACTTNTCGTTCGACCCGGAGGCCNC GCGATGGCCANC GGGAAAACANCGGCATAAGCAGCGACTCGAAGGGGT CGGCC CCGGCGCGGCGGAGGAGGATGACG ACG AGTGGAAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTNGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTNGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTT                       ]
[+] EMBL C99670               [                                                                                                                                                                                                                                                                                                                                                                                                            ttcGGGGCTNACCGTGTGACCGAAGGAAGCAATCGCCGGCTTCTT GGTGTTCA CGCGAAGAAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAAGA AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAA         ]
[+] EMBL AU029789             [                                                                                                                                                                                                                                                                                                                                                                                                                   aaacCCGTNTGACCG AGGCAGCCATCGCCGGCTTCTTGGGNGTTCA CGCG AGGAGTTNTTGCACCTCCTTCTCCTCCTCCATNGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAA     ]
[+] EMBL AU033157             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   ttcCTT GGTGTTCACCCCA AGNAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGTCCGTCGTCG CCGTCGTGTTCCGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAANAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA]
[+] EMBL AU033158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCCTCCTCCATTGTACCTGTCGCACTG AGCAAGTCCGTCGTCGCCCGTCGTGTTCCGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAANCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA]
[+] EMBL C97714               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       G AGN AGT CGTCGTCGANCGTCGTGTT CGTCGTCGTCGCCGACGGTAATCTCCACCNAGTGTGTGGTTGTATCGTGNNATGGTCGTTGNCGTCGGNCGTCTCGTCGCCGTAGTCTCGNCGGAGTTTCTGNCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAA       ]
[+] EMBL AU078191             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCNTNTCGTCGCCGTNGTCTNGCCGGNGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCNGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAA         ]
[+] EMBL AU078200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAA        ]


>consensus_13686#0 GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAA CCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGC CGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCGACGTGCTCCGCTCGATGCAGCACGA GCCCGAGGTGATGTTCGAGGTGCTCAAGCAGAGGACCGACGGCGCCACCGCCGCCGCGCT CGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGC CAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGTCGGCCGCCGGCGCGGCGGA GGAGGATGACGACGAGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCGAGGCAGCCATC GCCGGCTTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTAC CTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCGCCGTCGCCGACGGTAATCTC CACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAG TCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCG CTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTA AAAAAAAAAAAAA



consensusID : consensus_13686#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence
                              [CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATCGCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCGCCGTCGCCGACGNGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTATTAGTTGCTTCATT]

[-] EMBL C28875               [CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATCGCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCGCCGTCGCCGACGNGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTATTAGTTGCTTCATT]


>consensus_13686#1 CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATCGCCGGCNTCTTGGTGTTCACGCGA GGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAGCAGTCGTCGTC GCCGTCGTGTTCGTCGCCGTCGCCGACGNGTAATCTCCACCCAGTGTGTGGTTGTATCGT GTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCA CCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAG AGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTATTAGTTGCTTCATT



consensusID : consensus_13686#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence
                              [CGTGTACGTCGACCGTCANCGACNGTAATCTCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTTCGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT]

[+] EMBL AU078729             [CGTGTACGTCGACCGTCANCGACNGTAATCTCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTTCGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT]


>consensus_13686#2 CGTGTACGTCGACCGTCANCGACNGTAATCTCCACCCANTGTGTGGTTGTATCGTGTCAT GGTCGTTGTCGTCGGNCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGNCGCCACCTTT TTATTTNGCAANCGTCANTGTCCACTGTTTCGCTCTCCTTTTGNAATTTCATCAGNGAAT NAGATGNNGNACAAATAAGTTTCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13686#0      GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAA 60
consensus_13686#1      ------------------------------------------------------------
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      CCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGC 120
consensus_13686#1      ------------------------------------------------------------
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      CGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCGACGTGCTCCGCTCGATGCAGCACGA 180
consensus_13686#1      ------------------------------------------------------------
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      GCCCGAGGTGATGTTCGAGGTGCTCAAGCAGAGGACCGACGGCGCCACCGCCGCCGCGCT 240
consensus_13686#1      ------------------------------------------------------------
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      CGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGC 300
consensus_13686#1      ------------------------------------------------------------
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      CAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGTCGGCCGCCGGCGCGGCGGA 360
consensus_13686#1      ------------------------------------------------------------
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      GGAGGATGACGACGAGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCGAGGCAGCCATC 420
consensus_13686#1      ------------------------CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATC 36
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      GCCGGCTTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTAC 480
consensus_13686#1      GCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTAC 96
consensus_13686#2      ------------------------------------------------------------
                                                                                   

consensus_13686#0      CTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCG-CCGTCGCCGACGG-TAATC 538
consensus_13686#1      CTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCG-CCGTCGCCGACGNGTAATC 155
consensus_13686#2      -----------------------------CGTGTACGTCGACCGTCANCGACNG-TAATC 30
                                                    ***** ***** *****  ****   *****

consensus_13686#0      TCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGT 598
consensus_13686#1      TCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGT 215
consensus_13686#2      TCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGT 90
                       ******** ************************************ **************

consensus_13686#0      AGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTT 658
consensus_13686#1      AGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTT 275
consensus_13686#2      AGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTT 150
                       ******************* **************** **** ***** ************

consensus_13686#0      CGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGAT 718
consensus_13686#1      CGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGAT 335
consensus_13686#2      CGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT----- 205
                       ************* *********** **** *****  * ***************     

consensus_13686#0      TAAAAAAAAAAAAAA- 733
consensus_13686#1      TATTAGTTGCTTCATT 351
consensus_13686#2      ----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)