These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 733 fasta sequence [GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAACCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG-ACGTGCT-CCGCTCGATGCAGCACGAG-CCCGAGGTG-ATGTTCGAGGTGCTC-AAGCAGAGGACCGACGGCG-CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT-CGGCCGCCGGCGCGGCGGAGGAGGATGACG-ACG-AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG-AGGCAGCCATCGCCGGCTTCTT-GGTGTTCA-CGCG-AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG-AGC-AGT-CGTCGTCG-CCGTCGTGTT-CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA] [+] EMBL CB653666 [GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAACCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG ACGTGCT CCGCTCGATGCAGCACGAG CCCGAGGTG ATGTTCGAGGTGCTC AAGCAGAGGACCGACGGCG CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT CGGCCGCCGGCGCGGCGGAGGAGGATGACT ACC AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTT ] [-] EMBL CB678671 [ caCAACCTGTTCGGCGGTCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG ACGTGCT CCGCTCGATGCAGCACGAG CCCGAGGTG ATGTTCGAGGTGCTC AAGCAGAGGACCGACGGCG CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT CGGCCGCCGGCGCGGCGGAGGAGGATGACG ACG AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATCTCTTCAGGGAA ] [+] EMBL AU056473 [ GGGGCCTTCGTGCGCCGAACGTGCTCCCGCTCGATGCAGCACGAGCCCCGAGGTGAATGTTCGAGGTGCTCAAAGCAGAGGACCGACGGCGCCCACCGCCGCCGCGCTCGCCAGGGCGTTCNGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGTNCGGCCGCCGGCGCGGCGGAGGAGGATGACGAACGAAGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAA ] [-] EMBL OSS13230A [ ACTTNTCGTTCGACCCGGAGGCCNC GCGATGGCCANC GGGAAAACANCGGCATAAGCAGCGACTCGAAGGGGT CGGCC CCGGCGCGGCGGAGGAGGATGACG ACG AGTGGAAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTNGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTNGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTT ] [+] EMBL C99670 [ ttcGGGGCTNACCGTGTGACCGAAGGAAGCAATCGCCGGCTTCTT GGTGTTCA CGCGAAGAAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAAGA AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAA ] [+] EMBL AU029789 [ aaacCCGTNTGACCG AGGCAGCCATCGCCGGCTTCTTGGGNGTTCA CGCG AGGAGTTNTTGCACCTCCTTCTCCTCCTCCATNGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAA ] [+] EMBL AU033157 [ ttcCTT GGTGTTCACCCCA AGNAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGTCCGTCGTCG CCGTCGTGTTCCGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAANAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA] [+] EMBL AU033158 [ TCCTCCTCCATTGTACCTGTCGCACTG AGCAAGTCCGTCGTCGCCCGTCGTGTTCCGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAANCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA] [+] EMBL C97714 [ G AGN AGT CGTCGTCGANCGTCGTGTT CGTCGTCGTCGCCGACGGTAATCTCCACCNAGTGTGTGGTTGTATCGTGNNATGGTCGTTGNCGTCGGNCGTCTCGTCGCCGTAGTCTCGNCGGAGTTTCTGNCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAA ] [+] EMBL AU078191 [ ACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCNTNTCGTCGCCGTNGTCTNGCCGGNGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCNGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAA ] [+] EMBL AU078200 [ GTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAA ] consensusID : consensus_13686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATCGCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCGCCGTCGCCGACGNGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTATTAGTTGCTTCATT] [-] EMBL C28875 [CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATCGCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCGCCGTCGCCGACGNGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTATTAGTTGCTTCATT] consensusID : consensus_13686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [CGTGTACGTCGACCGTCANCGACNGTAATCTCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTTCGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT] [+] EMBL AU078729 [CGTGTACGTCGACCGTCANCGACNGTAATCTCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTTCGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13686#0 GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAA 60 consensus_13686#1 ------------------------------------------------------------ consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 CCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGC 120 consensus_13686#1 ------------------------------------------------------------ consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 CGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCGACGTGCTCCGCTCGATGCAGCACGA 180 consensus_13686#1 ------------------------------------------------------------ consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 GCCCGAGGTGATGTTCGAGGTGCTCAAGCAGAGGACCGACGGCGCCACCGCCGCCGCGCT 240 consensus_13686#1 ------------------------------------------------------------ consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 CGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGC 300 consensus_13686#1 ------------------------------------------------------------ consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 CAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGTCGGCCGCCGGCGCGGCGGA 360 consensus_13686#1 ------------------------------------------------------------ consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 GGAGGATGACGACGAGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCGAGGCAGCCATC 420 consensus_13686#1 ------------------------CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATC 36 consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 GCCGGCTTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTAC 480 consensus_13686#1 GCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTAC 96 consensus_13686#2 ------------------------------------------------------------ consensus_13686#0 CTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCG-CCGTCGCCGACGG-TAATC 538 consensus_13686#1 CTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCG-CCGTCGCCGACGNGTAATC 155 consensus_13686#2 -----------------------------CGTGTACGTCGACCGTCANCGACNG-TAATC 30 ***** ***** ***** **** ***** consensus_13686#0 TCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGT 598 consensus_13686#1 TCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGT 215 consensus_13686#2 TCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGT 90 ******** ************************************ ************** consensus_13686#0 AGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTT 658 consensus_13686#1 AGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTT 275 consensus_13686#2 AGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTT 150 ******************* **************** **** ***** ************ consensus_13686#0 CGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGAT 718 consensus_13686#1 CGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGAT 335 consensus_13686#2 CGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT----- 205 ************* *********** **** ***** * *************** consensus_13686#0 TAAAAAAAAAAAAAA- 733 consensus_13686#1 TATTAGTTGCTTCATT 351 consensus_13686#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||