These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1902 fasta sequence [TCCCGAGCTCTCACCGAGAGACCCAAAACCCTTTCCACCGATGGCCACCGCCGTAGCCGCCGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGGGGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGAGATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCTCAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGATCGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGTGCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCACATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAGGTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAGTGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTATCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGTTGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGAGACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGATGCTATCTTATGGTTGTACCCGCTTAGAAATTGGTGTTCAGAGCACATACGAGGATGTTGCACGTGACACAAACAGAGGTCACACTGTAGCTGCTGTTGCTGATTGCTTTTGTTTGGCTAAAGATGCTGGTTTTAAGGTGGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTTCCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC-AATTGTCC-GTGAAC-TTCATGTATATGGAACTGCAGTCC-C-TGTAC-ATGGTCGTGATGC-AGACAAAC-TAC-AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC-AGAAAGAATTGCTCGCAAGGAGC-ATCGTTC-AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC-GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC-TTACATGGTC-AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC-AGCATTGTCAC-TGTAGTATGGGTTTTGTACACC-A-GT-GTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTAC] [+] EMBL AK122179 [TCCCGAGCTCTCACCGAGAGACCCAAAACCCTTTCCACCGATGGCCACCGCCGTAGCCGCCGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGGGGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGAGATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCTCAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGATCGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGTGCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCACATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAGGTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAGTGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTATCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGTTGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGAGACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGATGCTATCTTATGGTTGTACCCGCTTAGAAATTGGTGTTCAGAGCACATACGAGGATGTTGCACGTGACACAAACAGAGGTCACACTGTAGCTGCTGTTGCTGATTGCTTTTGTTTGGCTAAAGATGCTGGTTTTAAGGTGGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTTCCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC A GT GTAACTTTTTTTTTATATGAATGAGTAAACAC ] [+] EMBL CB663105 [ CGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGGGGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGAGATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCTCAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGATCGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGTGCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCACATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAGGTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAGTGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTATCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGTTGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGAGACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGAT ] [+] EMBL CB679215 [ TTTTAAGGTGGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTTCCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGACAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCACGAGTTGGGACTC ] [+] EMBL CA999039 [ AGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCGAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACT ] [+] EMBL CB000679 [ AGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCGAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTANGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AG ] [-] EMBL CB663106 [ CTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC A GT GTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAA ] [-] EMBL CB679216 [ AACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC A GT GTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTAC] [+] EMBL CF331348 [ ggagtagaAATCTT T TGCTTGCTTTGGCTCGAATGGAAGATCTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTTCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTA ] [-] EMBL CF331347 [ TTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTTCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC ACGT GTAACTTTTTTTTTATATGAATGAGTAAACACACTTCCTTTCAAAAAAaa ] [+] EMBL BI812464 [ TAGGGAGGTGTTCAAATTGTCCAGTGAACATTCATGTATATGGAACTGCAGTCCACATGTACAATGGTCGTGATGCAAGACAAACGTACAAACACCA GGTTATGGTACTCTTTTGATGGAAGAACCAAGAAAGAATTGCTCGCAAGGAGCAATCGTTCAAAAGAAAATCGCTGTTATATCAGGAGTTGGGACTCAGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGCCCATTACATGGTCAAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAAGCATTGTCACATGTAGTATGGGTTTTGTACACCAA GTGGTAACTTTTTTTTTATATGAATGAGTAAAaaaaaaa ] consensusID : consensus_13694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [GGGGGGTGGNTATTGTTGNNAGANTTCTATNCATGGTACAACCTTGGACACNAGTTNACCGTGNTCAAAGAGATATCCCTATGCCTNTTGNNACTTCNGGTGNTGANAAAGGTAANCTNNNTGAGCTTGCTTTGCCTCGAANGGAANATTGAGGCTTGAANGGCCGNGATGNTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTANACCTGACNAAGNAGGCGCTTGTTCGGCGAGACTATGCTGCAATATGANGGCTGNNANACCTTTCTCTCATACCAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTNGCCGTACTGTNACATGCCCTGAGCTANNAGGGAGGCNNTCAATNGCCCGTGAACTTNATGNATACNNAACTGCAGNCNCTGTACATGGTCGTGATGCANACAAACTACAACACCATGGTTATGGTACTNTTTTGATGGTNNACNCANCAANGNATTGCTCGCAAGGAAGCATCGTATCAAAGAAANATCGCTNCCTATATCATNGAGTTGGGACTCAGNCACTACTACCGTAAAACTGNNNNTATGAACCTTGAGGGGCCCTTACATNGGNCAAANTGTCTGGGCTAAAAACTTCTATTNATGGGNGCTTGGNCTTC] [+] EMBL CA764949 [GGGGGGTGGNTATTGTTGNNAGANTTCTATNCATGGTACAACCTTGGACACNAGTTNACCGTGNTCAAAGAGATATCCCTATGCCTNTTGNNACTTCNGGTGNTGANAAAGGTAANCTNNNTGAGCTTGCTTTGCCTCGAANGGAANATTGAGGCTTGAANGGCCGNGATGNTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTANACCTGACNAAGNAGGCGCTTGTTCGGCGAGACTATGCTGCAATATGANGGCTGNNANACCTTTCTCTCATACCAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTNGCCGTACTGTNACATGCCCTGAGCTANNAGGGAGGCNNTCAATNGCCCGTGAACTTNATGNATACNNAACTGCAGNCNCTGTACATGGTCGTGATGCANACAAACTACAACACCATGGTTATGGTACTNTTTTGATGGTNNACNCANCAANGNATTGCTCGCAAGGAAGCATCGTATCAAAGAAANATCGCTNCCTATATCATNGAGTTGGGACTCAGNCACTACTACCGTAAAACTGNNNNTATGAACCTTGAGGGGCCCTTACATNGGNCAAANTGTCTGGGCTAAAAACTTCTATTNATGGGNGCTTGGNCTTC] consensusID : consensus_13694#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CTGGGAGACCTTTCTCTCATACCGAGGATACCCACCCAGGATATCGCGATTCCGAAAATGTGCCCCAATGGTTACATGCCCCTGAGCTAGTAGGGAGTTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTCCAGTCCCTGTACATGTCGTGATCGCAGACCAAACTACAACACCAGGGTTATGGTACTCTTTTGATGGAAGAACGCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGTTATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCACAGCATTGTCACTGTAGTATGGGTTTTGTACACCAGTGTAACTTTTTTTTTATATGAATGAGTAAACACCCCTCCTTTCAAAAAATGAGTAAAAAAAAA] [+] EMBL BI812991 [CTGGGAGACCTTTCTCTCATACCGAGGATACCCACCCAGGATATCGCGATTCCGAAAATGTGCCCCAATGGTTACATGCCCCTGAGCTAGTAGGGAGTTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTCCAGTCCCTGTACATGTCGTGATCGCAGACCAAACTACAACACCAGGGTTATGGTACTCTTTTGATGGAAGAACGCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGTTATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCACAGCATTGTCACTGTAGTATGGGTTTTGTACACCAGTGTAACTTTTTTTTTATATGAATGAGTAAACACCCCTCCTTTCAAAAAATGAGTAAAAAAAAA] consensusID : consensus_13694#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [AGGACGAGACAAGGGGGGGTTATGAACTTGAGGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAGCATTGTCACTGTAGTATGGGTTTTGTACACCAAGTGTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTACATACATCTCAAAAAAAAAA] [-] EMBL CA762714 [AGGACGAGACAAGGGGGGGTTATGAACTTGAGGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAGCATTGTCACTGTAGTATGGGTTTTGTACACCAAGTGTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTACATACATCTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TCCCGAGCTCTCACCGAGAGACCCAAAACCCTTTCCACCGATGGCCACCGCCGTAGCCGC 60 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 CGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGG 120 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGA 180 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCT 240 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 CAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGAT 300 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 CGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGT 360 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCA 420 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 CATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGA 480 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAG 540 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAG 600 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTA 660 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGT 720 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGA 780 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGATGCTATCTTATGGTTGTAC 840 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 CCGCTTAGAAATTGGTGTTCAGAGCACATACGAGGATGTTGCACGTGACACAAACAGAGG 900 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TCACACTGTAGCTGCTGTTGCTGATTGCTTTTGTTTGGCTAAAGATGCTGGTTTTAAGGT 960 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTT 1020 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 CCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCT 1080 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCC 1140 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 ACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACG 1200 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 AGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGG 1260 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGT 1320 consensus_13694#1 ------------------------------------------------------------ consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGA 1380 consensus_13694#1 --------------------GGGGGGTGGNTATTGTTGNNAGANTTCTATNCATGGTACA 40 consensus_13694#2 ---------------------------------------------CTGGGAGACCTTTCT 15 consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 GCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGA 1440 consensus_13694#1 ACCTTGGACACNAGTTNACCGTGNTCAAAGAGATATCCCTATGCCTNTTGNNACTTCNGG 100 consensus_13694#2 CTCATACCGAGGATACCCACCCAGGATATCGCGATTCCGAAAATGTGCCCCAATGGTTAC 75 consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTAC 1500 consensus_13694#1 TGNTGANAAAGGTAANCTNNNTGAGCTTGCTTTGCCTCGAANGGAANATTGAGGCTTGAA 160 consensus_13694#2 ATGCCCCTGAGCTAGTAGGGAGTTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTC 135 consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 ATGCCC-TGAGCTAGTAGGGAGGTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTG 1559 consensus_13694#1 NGGCCGNGATGNTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTANACC 220 consensus_13694#2 CAGTCCCTGTACATGTCGTGATCGCAGACCAAACTACAACACCAGGGTTATGGTACTCTT 195 consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 CAGTCCCTGTACATGGTCGTGATGCAGAC-AAACTACAACACCAGGGTTATGGTACTCTT 1618 consensus_13694#1 TGACNAAGNAGGCGCTTGTTCGGCGAGACTATGCTGCAATATGANGGCTGNNANACCTTT 280 consensus_13694#2 TTGATGGAAGAACGCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGT 255 consensus_13694#3 ------------------------------------------------------------ consensus_13694#0 TTGATGGAAGAA-GCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGT 1677 consensus_13694#1 CTCTCATACCAGGATACACAGCAGGATATCCTTATTGGTCTGCT---GCGATTGCGAAAA 337 consensus_13694#2 TATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGG-CC 314 consensus_13694#3 -----------------------AGGACGAGACAAGGGGGGGTTATGAACTTGAGGGGCC 37 consensus_13694#0 TATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC 1737 consensus_13694#1 TGTNGCCGTACTGTNACATGCCCTGAGCTANNAGGGAGGCNNTCAATNGCCCGTGAACTT 397 * * * * * * * consensus_13694#2 T-TACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCA-CAG 372 consensus_13694#3 T-TACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAG 96 consensus_13694#0 T-TACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAG 1796 consensus_13694#1 NATGNATACNNAACTG-CAGNCNCTGTACATGGTCGTGATGCANAC--AAACTACAACAC 454 * ** ** ** * * ** * * * *** * * *** ** ** consensus_13694#2 CATTGTCACTGTAGTATGGGTTTTGTACACCA-GTGTAACTTTTTTT-----------TT 420 consensus_13694#3 CATTGTCACTGTAGTATGGGTTTTGTACACCAAGTGTAACTTTTTTT-----------TT 145 consensus_13694#0 CATTGTCACTGTAGTATGGGTTTTGTACACCA-GTGTAACTTTTTTT-----------TT 1844 consensus_13694#1 CATGGTTATGGTACTNTTTTGATGGTNNACNCANCAANGNATTGCTCGCAAGGAAGCATC 514 *** ** * *** * * * ** ** ** * * consensus_13694#2 ATATGAATGAGTAAACACCCCTCCTTTCAAAAAATGAGTAAAAAAAAA------------ 468 consensus_13694#3 ATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTACAT 205 consensus_13694#0 ATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTAC-- 1902 consensus_13694#1 GTATCAAAGAAANATCGCTNCCTATATCATNGAGTTGG--GACTCAGNCACTACTACCGT 572 *** ** ** * * * * * *** * * * * * consensus_13694#2 ------------------------------------------------------------ consensus_13694#3 ACATCTCAAAAAAAAAA------------------------------------------- 222 consensus_13694#0 ------------------------------------------------------------ consensus_13694#1 AAAACTGNNNNTATGAACCTTGAGGGGCCCTTACATNGGNCAAANTGTCTGGGCTAAAAA 632 consensus_13694#2 -------------------------- consensus_13694#3 -------------------------- consensus_13694#0 -------------------------- consensus_13694#1 CTTCTATTNATGGGNGCTTGGNCTTC 658 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||