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Oryza sativa
cluster # 13706 cluster # 13706       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13706#0 length = 1710 sequences # 11  
consensus_13706#1 length = 694 sequences # 1  
consensus_13706#2 length = 371 sequences # 1  

consensusID : consensus_13706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1710
fasta sequence
                              [TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGGTGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCATTGTTTTCA-TGATG-AAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC--AAAGTGGTTCATCCC-TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT-GGAGTTTTGCACCACGCAAACTGGCA-GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC-AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGATGGTGAATTGGTGATACCCGGATCTCAGAT]

[+] EMBL CB678297             [TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGGTGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCATTGTTTTCATTGATG AAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGCAAAATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAACCTTACCGCCTACCATGAAAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CA755002             [                                                                                                                                       AGTGAGGTCATTGTTTCAAGCTGCAAGAAAGAGGGCGCCATGCATNGTNTTCA TGATGAAAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTNGTCGAGATGGATGGTTNTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCNTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATNTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAANGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK068431             [                                                                                                                                                                                                                                                                                               CAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAA AAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC  AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTCAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGATGGTGAATTGGTGATACCCGGATCTCAGAT]
[+] EMBL AK060394             [                                                                                                                                                                                                                                                                                                                                                     CCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGTCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC  AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTT                                                                                                          ]
[+] EMBL BE230074             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACCAAAAGTGGGTCATCCCTTACCAAGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BE230473             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB628593             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC  AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAAT                                                                                            ]
[-] EMBL CB668378             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC  AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAAGGGTGTTTGTGATATATATATTTGCATATTTGCA                                                                                               ]
[-] EMBL CB628635             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC  AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAAT                                                                                            ]
[+] EMBL CF312376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC  AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACATGGGAGTTTTGCACCACGCAAACTGGCAGGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGC                                                                                                                                                                                                                                           ]
[-] EMBL CA762932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC  AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGATGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAaaaaaaaaa                                                                      ]


>consensus_13706#0 TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGG TGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGG TGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCAT TGTTTTCATGATGAAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACA AAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATA ATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGT AGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTC GAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGC AGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAG GCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGT ATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACG GCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATT CACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCA CAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGT GGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAAT GATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGAT GCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGAT GCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAG CATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCA GATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAA GAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGC TGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTC TCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACTGGCAGGAA GTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTATTACTGT GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTT CATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACAT TGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCA CATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGA TGGTGAATTGGTGATACCCGGATCTCAGAT



consensusID : consensus_13706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [CAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTTTCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCACATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACGATGGTGAATTGGTGATAAAAAAAAAAAA]

[-] EMBL CA762931             [CAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTTTCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCACATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACGATGGTGAATTGGTGATAAAAAAAAAAAA]


>consensus_13706#1 CAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTT TATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAA CACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTT CTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCA GTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCT TTTATCATTTTTCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAA ACGGGCAGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCG ATTAATACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGG GTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGA ACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATA TTTGCAAATCACATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTG CATACGATGGTGAATTGGTGATAAAAAAAAAAAA



consensusID : consensus_13706#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence
                              [GACGACGACTACGCCTTCTACTACTCTTTCTTCCAGGACGCCGCCGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACGGAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT]

[+] EMBL BE230474             [GACGACGACTACGCCTTCTACTACTCTTTCTTCCAGGACGCCGCCGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACGGAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT]


>consensus_13706#2 GACGACGACTACGCCTTCTACTACTCTTTCTTCCAGGACGCCGCCGCCGCCGCCGAGTAT GCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACGGAAGCGGAAGAGGGGA CGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAG ACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTT GCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCAT ACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGT CCTGTCATTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13706#0      TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGG 60
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      TGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGG 120
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      TGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCAT 180
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      TGTTTTCATGATGAAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACA 240
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      AAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATA 300
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      ATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGT 360
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      AGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTC 420
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGC 480
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      AGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAG 540
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGT 600
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      ATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACG 660
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATT 720
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      CACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCA 780
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      CAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGT 840
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAAT 900
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGAT 960
consensus_13706#1      ------------------------------------------------------------
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGAT 1020
consensus_13706#1      -------------------------------------------------CAAGGATAGAT 11
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAG 1080
consensus_13706#1      GCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAG 71
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      CATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCA 1140
consensus_13706#1      CATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCA 131
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAA 1200
consensus_13706#1      GATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAA 191
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      GAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGC 1260
consensus_13706#1      GAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGC 251
consensus_13706#2      ------------------------------------------------------------
                                                                                   

consensus_13706#0      TGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTC 1320
consensus_13706#1      TGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTT 311
consensus_13706#2      ---------------GACGACGACTA-CGCCTTCTACTACTCTTTCTTCCAGGACGCCGC 44
                                             * *  *****   *   * *            *     

consensus_13706#0      TCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACTGGCAGGAA 1380
consensus_13706#1      TCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAA 371
consensus_13706#2      CGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACG 104
                         **  *    *    * * *    * *    *      *   * *   *  **  *   

consensus_13706#0      GTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTATTACTGT 1440
consensus_13706#1      GTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGT 431
consensus_13706#2      GAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCA-CACAGC 163
                       *      **** **** **    *    *  **   *** *   **  * * *  ** * 

consensus_13706#0      GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTT 1500
consensus_13706#1      GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTT 491
consensus_13706#2      TTCCTT-CACAGGATGAGACTTCTATTAGCA-AGAAACA--GCTGCTGG---CACGTCTT 216
                         *    * **   **   *   * ** **  ** * **  *** ****    *    **

consensus_13706#0      CATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACAT 1560
consensus_13706#1      CATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACAT 551
consensus_13706#2      GATGTTTGCATGGGT--GGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAA--GACAATGT 272
                        **  *    *  **  ** *     *   * * *    ***** *****     **  *

consensus_13706#0      TGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCA 1620
consensus_13706#1      TGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCA 611
consensus_13706#2      TACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGA-GCTTGCTCA---GTACATGG 328
                       * **  *  ***     *  **  *  *  **  * * *   ****  *   * * **  

consensus_13706#0      CATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGA 1680
consensus_13706#1      CATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATAC----GA 667
consensus_13706#2      TATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT----------------- 371
                        **     *  *         *  * ***  *  *** ***                   

consensus_13706#0      TGGTGAATTGGTGATACCCGGATCTCAGAT 1710
consensus_13706#1      TGGTGAATTGGTGATAAAAAAAAAAAA--- 694
consensus_13706#2      ------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)