These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1710 fasta sequence [TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGGTGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCATTGTTTTCA-TGATG-AAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC--AAAGTGGTTCATCCC-TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT-GGAGTTTTGCACCACGCAAACTGGCA-GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC-AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGATGGTGAATTGGTGATACCCGGATCTCAGAT] [+] EMBL CB678297 [TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGGTGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCATTGTTTTCATTGATG AAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGCAAAATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAACCTTACCGCCTACCATGAAAGTG ] [-] EMBL CA755002 [ AGTGAGGTCATTGTTTCAAGCTGCAAGAAAGAGGGCGCCATGCATNGTNTTCA TGATGAAAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTNGTCGAGATGGATGGTTNTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCNTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATNTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAANGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCT ] [+] EMBL AK068431 [ CAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAA AAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTCAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGATGGTGAATTGGTGATACCCGGATCTCAGAT] [+] EMBL AK060394 [ CCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGTCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTT ] [+] EMBL BE230074 [ GAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACCAAAAGTGGGTCATCCCTTACCAAGAAGA ] [+] EMBL BE230473 [ GAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATA ] [-] EMBL CB628593 [ CTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAAT ] [-] EMBL CB668378 [ AGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAAGGGTGTTTGTGATATATATATTTGCATATTTGCA ] [-] EMBL CB628635 [ ATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAAT ] [+] EMBL CF312376 [ CAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACATGGGAGTTTTGCACCACGCAAACTGGCAGGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGC ] [-] EMBL CA762932 [ GGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGATGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAaaaaaaaaa ] consensusID : consensus_13706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTTTCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCACATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACGATGGTGAATTGGTGATAAAAAAAAAAAA] [-] EMBL CA762931 [CAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTTTCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCACATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACGATGGTGAATTGGTGATAAAAAAAAAAAA] consensusID : consensus_13706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [GACGACGACTACGCCTTCTACTACTCTTTCTTCCAGGACGCCGCCGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACGGAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT] [+] EMBL BE230474 [GACGACGACTACGCCTTCTACTACTCTTTCTTCCAGGACGCCGCCGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACGGAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13706#0 TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGG 60 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 TGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGG 120 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 TGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCAT 180 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 TGTTTTCATGATGAAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACA 240 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 AAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATA 300 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 ATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGT 360 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 AGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTC 420 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGC 480 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 AGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAG 540 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGT 600 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 ATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACG 660 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATT 720 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 CACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCA 780 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 CAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGT 840 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAAT 900 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGAT 960 consensus_13706#1 ------------------------------------------------------------ consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGAT 1020 consensus_13706#1 -------------------------------------------------CAAGGATAGAT 11 consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAG 1080 consensus_13706#1 GCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAG 71 consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 CATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCA 1140 consensus_13706#1 CATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCA 131 consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAA 1200 consensus_13706#1 GATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAA 191 consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 GAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGC 1260 consensus_13706#1 GAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGC 251 consensus_13706#2 ------------------------------------------------------------ consensus_13706#0 TGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTC 1320 consensus_13706#1 TGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTT 311 consensus_13706#2 ---------------GACGACGACTA-CGCCTTCTACTACTCTTTCTTCCAGGACGCCGC 44 * * ***** * * * * consensus_13706#0 TCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACTGGCAGGAA 1380 consensus_13706#1 TCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAA 371 consensus_13706#2 CGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACG 104 ** * * * * * * * * * * * * ** * consensus_13706#0 GTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTATTACTGT 1440 consensus_13706#1 GTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGT 431 consensus_13706#2 GAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCA-CACAGC 163 * **** **** ** * * ** *** * ** * * * ** * consensus_13706#0 GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTT 1500 consensus_13706#1 GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTT 491 consensus_13706#2 TTCCTT-CACAGGATGAGACTTCTATTAGCA-AGAAACA--GCTGCTGG---CACGTCTT 216 * * ** ** * * ** ** ** * ** *** **** * ** consensus_13706#0 CATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACAT 1560 consensus_13706#1 CATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACAT 551 consensus_13706#2 GATGTTTGCATGGGT--GGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAA--GACAATGT 272 ** * * ** ** * * * * * ***** ***** ** * consensus_13706#0 TGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCA 1620 consensus_13706#1 TGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCA 611 consensus_13706#2 TACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGA-GCTTGCTCA---GTACATGG 328 * ** * *** * ** * * ** * * * **** * * * ** consensus_13706#0 CATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGA 1680 consensus_13706#1 CATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATAC----GA 667 consensus_13706#2 TATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT----------------- 371 ** * * * * *** * *** *** consensus_13706#0 TGGTGAATTGGTGATACCCGGATCTCAGAT 1710 consensus_13706#1 TGGTGAATTGGTGATAAAAAAAAAAAA--- 694 consensus_13706#2 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||