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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 777 fasta sequence
[GAGTAGAAAATCCTCCACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC-TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA-GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATGCTATTCGACCATTGTCCTAGTTTATGTTTGTCCTTTAAA]
[+] EMBL CF301348 [GAGTAGAAAATCCT TTCACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCTTTTCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCA ]
[+] EMBL AK063198 [ gtATCCTCCACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGAT TTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATG ]
[+] EMBL CF292204 [ agtagaaaACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAAGGGTTTTGTAGCCCCAGTTTATG ]
[+] EMBL OS1321684 [ CGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTNAGGATGCCGAGGGCCACGAGCGATGCGAAGTTCCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGNAGTCGNCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTNCTCTCATGCATAGG ACTGCAGTCCTNGNTGTTTGCCTTTGGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTTCTTCTGAAAGGCGGTTTtnagtt ]
[-] EMBL CB627893 [ CGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACAGAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGC TTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGAAGGCAACATGCTATTCGACCATTGTCCTAGTTTAT ]
[+] EMBL CA754124 [ CCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTNATTCGACAATNTTTCGAGAAACTATAAGTTCTCTACCTGC ]
[+] EMBL CB627892 [ CACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACAGAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGC TTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATGCTATTCGACCATTGTCC ]
[+] EMBL D89726 [ agAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATG ]
[-] EMBL CF305408 [ AGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAG GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCAACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATGCTATTCGACCATGCTGTTAACTGTTGTTTGTCCTTTAAA]
[+] EMBL AU176515 [ gcgtccgGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAAaaaaa ]
[+] EMBL OSR14131A [ TTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTAT ]
[+] EMBL AA751733 [ TTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAA GGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTC ]
consensusID : consensus_13709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTCAAGTTACCAAAGATACCAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAAAAAAAAAAAAAAA]
[-] EMBL CF292205 [GCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTCAAGTTACCAAAGATACCAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13709#0 GAGTAGAAAATCCTCCACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCG 60
consensus_13709#1 ------------------------------------------------------------
consensus_13709#0 TCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGA 120
consensus_13709#1 ------------------------------------------------------------
consensus_13709#0 TTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGG 180
consensus_13709#1 ------------------------------------------------------------
consensus_13709#0 CTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCG 240
consensus_13709#1 ------------------------------------------------------------
consensus_13709#0 CCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTT 300
consensus_13709#1 -----GCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTT 55
*******************************************************
consensus_13709#0 TCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTC 360
consensus_13709#1 TCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTC 115
************************************************************
consensus_13709#0 AAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATT 420
consensus_13709#1 AAGTTACCAAAGATACCAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATT 175
****** ******** ********************************************
consensus_13709#0 TCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTG 480
consensus_13709#1 TCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTG 235
************************************************************
consensus_13709#0 CCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTG 540
consensus_13709#1 CCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTG 295
************************************************************
consensus_13709#0 ATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAA 600
consensus_13709#1 ATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAA 355
************************************************************
consensus_13709#0 TTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTT 660
consensus_13709#1 TTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTT 415
************************************************************
consensus_13709#0 ATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGA 720
consensus_13709#1 ATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGA 475
************************************************************
consensus_13709#0 CCGAAGGTTGGCAACATGCTATTCGACCATTGTCCTAGTTTATGTTTGTCCTTTAAA 777
consensus_13709#1 CCGAAGGTTGGCAAAAAAAAAAAAAAA------------------------------ 502
************** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||