These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 777 fasta sequence [GAGTAGAAAATCCTCCACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC-TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA-GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATGCTATTCGACCATTGTCCTAGTTTATGTTTGTCCTTTAAA] [+] EMBL CF301348 [GAGTAGAAAATCCT TTCACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCTTTTCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCA ] [+] EMBL AK063198 [ gtATCCTCCACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGAT TTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATG ] [+] EMBL CF292204 [ agtagaaaACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAAGGGTTTTGTAGCCCCAGTTTATG ] [+] EMBL OS1321684 [ CGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTNAGGATGCCGAGGGCCACGAGCGATGCGAAGTTCCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGNAGTCGNCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTNCTCTCATGCATAGG ACTGCAGTCCTNGNTGTTTGCCTTTGGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTTCTTCTGAAAGGCGGTTTtnagtt ] [-] EMBL CB627893 [ CGATCTCCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACAGAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGC TTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGAAGGCAACATGCTATTCGACCATTGTCCTAGTTTAT ] [+] EMBL CA754124 [ CCCACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTNATTCGACAATNTTTCGAGAAACTATAAGTTCTCTACCTGC ] [+] EMBL CB627892 [ CACCCCGCGCGGCGCCGGCGCCCGTCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACAGAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGC TTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATGCTATTCGACCATTGTCC ] [+] EMBL D89726 [ agAAGATTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATG ] [-] EMBL CF305408 [ AGATCATTGACCTCTATGTGGTCTTTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAG GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCAACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAACATGCTATTCGACCATGCTGTTAACTGTTGTTTGTCCTTTAAA] [+] EMBL AU176515 [ gcgtccgGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAAaaaaa ] [+] EMBL OSR14131A [ TTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTAT ] [+] EMBL AA751733 [ TTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCC TTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAA GGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAA GGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTC ] consensusID : consensus_13709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTCAAGTTACCAAAGATACCAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAAAAAAAAAAAAAAA] [-] EMBL CF292205 [GCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTCAAGTTACCAAAGATACCAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTGCCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGACCGAAGGTTGGCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13709#0 GAGTAGAAAATCCTCCACACCTCGTCGCCGATCTCCCACCCCGCGCGGCGCCGGCGCCCG 60 consensus_13709#1 ------------------------------------------------------------ consensus_13709#0 TCCGTCCTCTCCTCTCCTGCCTCCGCCGCATCCTCGCCTCGCCTCGCCGAACACACAAGA 120 consensus_13709#1 ------------------------------------------------------------ consensus_13709#0 TTTTGAGGATGCCGAGGGCCACGAGCGATGCGAAGCTTCTAATTCAGTCCCTGGGCAAGG 180 consensus_13709#1 ------------------------------------------------------------ consensus_13709#0 CTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCTTTGCAGTCG 240 consensus_13709#1 ------------------------------------------------------------ consensus_13709#0 CCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTT 300 consensus_13709#1 -----GCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTT 55 ******************************************************* consensus_13709#0 TCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTC 360 consensus_13709#1 TCCTTTCTGGCGTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTC 115 ************************************************************ consensus_13709#0 AAGTTAACAAAGATAACAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATT 420 consensus_13709#1 AAGTTACCAAAGATACCAAGGAATTCAAGGATCTTCCTCCTGAAAGGGCGTTTGCAGATT 175 ****** ******** ******************************************** consensus_13709#0 TCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTG 480 consensus_13709#1 TCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTTGATGTCCTG 235 ************************************************************ consensus_13709#0 CCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTG 540 consensus_13709#1 CCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTG 295 ************************************************************ consensus_13709#0 ATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAA 600 consensus_13709#1 ATGTTTGGGAGTGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAA 355 ************************************************************ consensus_13709#0 TTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTT 660 consensus_13709#1 TTCGACAATTTTTCGAGAAACTATAAGTTCTCTACCTGCCGTTCGCTGCGGCTTATCTTT 415 ************************************************************ consensus_13709#0 ATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGA 720 consensus_13709#1 ATATCTGTGTATTTAGTGTTTAACAATCTTAGAACATGTGATCCTGTTTTCTTCAAGTGA 475 ************************************************************ consensus_13709#0 CCGAAGGTTGGCAACATGCTATTCGACCATTGTCCTAGTTTATGTTTGTCCTTTAAA 777 consensus_13709#1 CCGAAGGTTGGCAAAAAAAAAAAAAAA------------------------------ 502 ************** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||