These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13718#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 773 fasta sequence [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG-CG-TTCCTGACGCAGACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTCGTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCANGAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC] [+] EMBL AU062614 [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGC NCAGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTC GNTCGTC ] [+] EMBL AU062608 [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAACTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGANGCCGGGTCGGTGTCCCTGGACGA ] [+] EMBL AU197654 [ AAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGC ] [+] EMBL OSC104581 [ AGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGG GTCCGGTGCACCGTCGCCGTGACGCGGTTCGTNGTAGGATCGACCACCAAGCCCTGCAGCCTCGGNTCGTCGCCGGTGCGCGTCGGANTGTTCTCCGACGGCTGCAACGAG ] [+] EMBL C26628 [ GAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCANTTCGGCAAGCGCCTNGNCGGCCATGAC GNGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTAGGCTCGACCACCAAGCCCTGCAGC ] [+] EMBL CB647448 [ AGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG CG TTCCTGACGCAGACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTCGTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCANGAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC] [+] EMBL OSC101331 [ TTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTNGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGNTCGACCACCAAGCCCTGCAGCCTCGGNTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGNTGCGACGAGGGCGGCCCGGCGNAG TCGGCGGCCACCGCGGCCCGTACTTCCAGCGGNTGGAGGAGGCCG ] [+] EMBL CB683712 [ CGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCATTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCTCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG CG TTCCTGACGCACACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGTCGCCCACGACACGCACCACCCGTCCATGCACGCGCTGCTGATGAACCAATTCGTCGGACTCGACAACGTCGACCA ] [+] EMBL C28253 [ GGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGGCGTCCGGTGCACCGTCGCCGTNACGCGGTTCGTNGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGAG TCGGCGGCCAac ] [+] EMBL OSC623 [ AAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGGCGTCCGGTGCACCGTCGCCGTAACGCGGTTCGTAGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGNGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGAG TCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTTCTCCGC ] [+] EMBL C28107 [ aAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGA CTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGGGCGGCGCCANGGCGCGGCGTGCGCGGACGTTTCCTGACGCAGANGTG ] [+] EMBL C26386 [ AGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGG GTCCGGTGCACCGTCGCCGTNACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGA NTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGC ] consensusID : consensus_13718#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [ANCATGGTCCGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGCCGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCCGTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGGGAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT] [+] EMBL AA751625 [ANCATGGTCCGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGCCGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCCGTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGGGAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13718#0 CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTG-GTGCAATCCGGCGA 59 consensus_13718#1 ------------------------------------ANCATGGTCCGTGCAATCCGGCGA 24 ****** ************** consensus_13718#0 GGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCT 119 consensus_13718#1 GGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCT 84 ************************************************************ consensus_13718#0 CCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCG 179 consensus_13718#1 CCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCG 144 ************************************************************ consensus_13718#0 GTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGG 239 consensus_13718#1 GTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGC 204 ************************ ******* ************************** consensus_13718#0 CGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCC 299 consensus_13718#1 CGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCC 264 ********************** * ************** ******** *********** consensus_13718#0 GTACTTCCAGCGGCTGGAGGAGGCCG-GGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGG 358 consensus_13718#1 GTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGG 324 ********* *** **** **************** * ************* consensus_13718#0 -AGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTG 417 consensus_13718#1 GAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT----- 379 ******* ******** ******************* *** **** ******** consensus_13718#0 CCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGGCGTTCCTGACGCAGACGTGCGCC 477 consensus_13718#1 ------------------------------------------------------------ consensus_13718#0 GTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCG 537 consensus_13718#1 ------------------------------------------------------------ consensus_13718#0 GACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACG 597 consensus_13718#1 ------------------------------------------------------------ consensus_13718#0 TTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTC 657 consensus_13718#1 ------------------------------------------------------------ consensus_13718#0 GTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCAN 717 consensus_13718#1 ------------------------------------------------------------ consensus_13718#0 GAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC 773 consensus_13718#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||