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Oryza sativa
cluster # 13718 cluster # 13718       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13718#0 length = 773 sequences # 12  
consensus_13718#1 length = 379 sequences # 1  

consensusID : consensus_13718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 773
fasta sequence
                              [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG-CG-TTCCTGACGCAGACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTCGTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCANGAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC]

[+] EMBL AU062614             [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGC NCAGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTC GNTCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU062608             [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAACTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGANGCCGGGTCGGTGTCCCTGGACGA                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU197654             [  AAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGC                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC104581            [   AGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGG GTCCGGTGCACCGTCGCCGTGACGCGGTTCGTNGTAGGATCGACCACCAAGCCCTGCAGCCTCGGNTCGTCGCCGGTGCGCGTCGGANTGTTCTCCGACGGCTGCAACGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C26628               [    GAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCANTTCGGCAAGCGCCTNGNCGGCCATGAC GNGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTAGGCTCGACCACCAAGCCCTGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB647448             [         AGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG CG TTCCTGACGCAGACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTCGTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCANGAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC]
[+] EMBL OSC101331            [           TTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTNGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGNTCGACCACCAAGCCCTGCAGCCTCGGNTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGNTGCGACGAGGGCGGCCCGGCGNAG TCGGCGGCCACCGCGGCCCGTACTTCCAGCGGNTGGAGGAGGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB683712             [             CGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCATTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCTCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG CG TTCCTGACGCACACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGTCGCCCACGACACGCACCACCCGTCCATGCACGCGCTGCTGATGAACCAATTCGTCGGACTCGACAACGTCGACCA                                                                                             ]
[+] EMBL C28253               [                   GGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGGCGTCCGGTGCACCGTCGCCGTNACGCGGTTCGTNGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGAG TCGGCGGCCAac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC623               [                           AAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGGCGTCCGGTGCACCGTCGCCGTAACGCGGTTCGTAGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGNGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGAG TCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTTCTCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C28107               [                                 aAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGA CTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGGGCGGCGCCANGGCGCGGCGTGCGCGGACGTTTCCTGACGCAGANGTG                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C26386               [                                                               AGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGG GTCCGGTGCACCGTCGCCGTNACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGA NTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_13718#0 CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAG GGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTC CAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGG TTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGC GTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCG TACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAG GCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCC CGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGGCGTTCCTGACGCAGACGTGCGCCGTG GACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGAC GGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTC CTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTCGTC GGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCANGAA GCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC



consensusID : consensus_13718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence
                              [ANCATGGTCCGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGCCGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCCGTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGGGAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT]

[+] EMBL AA751625             [ANCATGGTCCGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGCCGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCCGTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGGGAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT]


>consensus_13718#1 ANCATGGTCCGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTC CCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGT CCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCT CGGCTCGTCGCCGGTGCGCGTCGCCGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGC GGANCTCGGCGGGCACCGCGGCCCGTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGT CCCTGGACAANCTGCTCCGCGGGGGAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTG TNCGANACGTNCATGCCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13718#0      CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTG-GTGCAATCCGGCGA 59
consensus_13718#1      ------------------------------------ANCATGGTCCGTGCAATCCGGCGA 24
                                                             ******  **************

consensus_13718#0      GGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCT 119
consensus_13718#1      GGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCT 84
                       ************************************************************

consensus_13718#0      CCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCG 179
consensus_13718#1      CCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCG 144
                       ************************************************************

consensus_13718#0      GTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGG 239
consensus_13718#1      GTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGC 204
                       ************************ ******* ************************** 

consensus_13718#0      CGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCC 299
consensus_13718#1      CGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCC 264
                       ********************** * ************** ******** ***********

consensus_13718#0      GTACTTCCAGCGGCTGGAGGAGGCCG-GGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGG 358
consensus_13718#1      GTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGG 324
                       ********* *** ****          **************** * *************

consensus_13718#0      -AGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTG 417
consensus_13718#1      GAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT----- 379
                        ******* ******** ******************* *** **** ********     

consensus_13718#0      CCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGGCGTTCCTGACGCAGACGTGCGCC 477
consensus_13718#1      ------------------------------------------------------------
                                                                                   

consensus_13718#0      GTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCG 537
consensus_13718#1      ------------------------------------------------------------
                                                                                   

consensus_13718#0      GACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACG 597
consensus_13718#1      ------------------------------------------------------------
                                                                                   

consensus_13718#0      TTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTC 657
consensus_13718#1      ------------------------------------------------------------
                                                                                   

consensus_13718#0      GTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCAN 717
consensus_13718#1      ------------------------------------------------------------
                                                                                   

consensus_13718#0      GAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC 773
consensus_13718#1      --------------------------------------------------------
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)