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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13718#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 773 fasta sequence
[CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG-CG-TTCCTGACGCAGACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTCGTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCANGAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC]
[+] EMBL AU062614 [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGC NCAGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTC GNTCGTC ]
[+] EMBL AU062608 [CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAACTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGANGCCGGGTCGGTGTCCCTGGACGA ]
[+] EMBL AU197654 [ AAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGC ]
[+] EMBL OSC104581 [ AGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGG GTCCGGTGCACCGTCGCCGTGACGCGGTTCGTNGTAGGATCGACCACCAAGCCCTGCAGCCTCGGNTCGTCGCCGGTGCGCGTCGGANTGTTCTCCGACGGCTGCAACGAG ]
[+] EMBL C26628 [ GAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCANTTCGGCAAGCGCCTNGNCGGCCATGAC GNGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTAGGCTCGACCACCAAGCCCTGCAGC ]
[+] EMBL CB647448 [ AGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG CG TTCCTGACGCAGACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTCGTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCANGAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC]
[+] EMBL OSC101331 [ TTCGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTNGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGNTCGACCACCAAGCCCTGCAGCCTCGGNTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGNTGCGACGAGGGCGGCCCGGCGNAG TCGGCGGCCACCGCGGCCCGTACTTCCAGCGGNTGGAGGAGGCCG ]
[+] EMBL CB683712 [ CGACGAGGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCATTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCTCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGG CG TTCCTGACGCACACGTGCGCCGTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCGGACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACGTTCCTGGTCGCCCACGACACGCACCACCCGTCCATGCACGCGCTGCTGATGAACCAATTCGTCGGACTCGACAACGTCGACCA ]
[+] EMBL C28253 [ GGGAATCGAAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGGCGTCCGGTGCACCGTCGCCGTNACGCGGTTCGTNGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGAG TCGGCGGCCAac ]
[+] EMBL OSC623 [ AAGCTCGAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGGCGTCCGGTGCACCGTCGCCGTAACGCGGTTCGTAGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGNGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGAG TCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTTCTCCGC ]
[+] EMBL C28107 [ aAAGCCATGGTGGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGA CTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGGAGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTGCCCCGGCTGGGGCGGCGCCANGGCGCGGCGTGCGCGGACGTTTCCTGACGCAGANGTG ]
[+] EMBL C26386 [ AGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATNACGG GTCCGGTGCACCGTCGCCGTNACGCGGTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGGCGTGTTCTCCGACGGCTGCAACGAGGGCGGCCCGGCGGA NTCGGCGGCCACCGCGGCCCGTACTTCCAGCGGCTGGAGGAGGCCGGGTCGGTGTCCCTGGACGAGCTGCTCCGC ]
consensusID : consensus_13718#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[ANCATGGTCCGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGCCGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCCGTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGGGAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT]
[+] EMBL AA751625 [ANCATGGTCCGTGCAATCCGGCGAGGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCTCCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCGGTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGCCGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCCGTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGGGAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13718#0 CCAAGAAAGAGTTCGACGAGGGAATCGAAGCTCGAAGCCATGGTG-GTGCAATCCGGCGA 59
consensus_13718#1 ------------------------------------ANCATGGTCCGTGCAATCCGGCGA 24
****** **************
consensus_13718#0 GGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCT 119
consensus_13718#1 GGGAAGCGTCCATGTCGTCCTCGTGCCATACCCGTCCCAGGGCCACATCAACCCGGTGCT 84
************************************************************
consensus_13718#0 CCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCG 179
consensus_13718#1 CCAGTTCGGCAAGCGCCTCGCCGGCCATGACGGCGTCCGGTGCACCGTCGCCGTGACGCG 144
************************************************************
consensus_13718#0 GTTCGTCGTCGGCTCGACCACCAAGCCCTGCAGCCTCGGCTCGTCGCCGGTGCGCGTCGG 239
consensus_13718#1 GTTCGTCGTCGGCTCGACCACCAANCCCTGCANCCTCGGCTCGTCGCCGGTGCGCGTCGC 204
************************ ******* **************************
consensus_13718#0 CGTGTTCTCCGACGGCTGCGACGAGGGCGGCCCGGCGGAGCTCGGCGGCCACCGCGGCCC 299
consensus_13718#1 CGTGTTCTCCGACGGCTGCGACAANGGCGGCCCGGCGGANCTCGGCGGGCACCGCGGCCC 264
********************** * ************** ******** ***********
consensus_13718#0 GTACTTCCAGCGGCTGGAGGAGGCCG-GGTCGGTGTCCCTGGACGAGCTGCTCCGCGGGG 358
consensus_13718#1 GTACTTCCANCGGNTGGANNNTTTTTTNGTCGGTGTCCCTGGACAANCTGCTCCGCGGGG 324
********* *** **** **************** * *************
consensus_13718#0 -AGGCGGAGCGGGGGACGCCGGCGACGGTGGTGGTGTACGACACGTTCATGCCGTGGGTG 417
consensus_13718#1 GAGGCGGAACGGGGGACNCCGGCGACGGTGGTGGTGTNCGANACGTNCATGCCGT----- 379
******* ******** ******************* *** **** ********
consensus_13718#0 CCCCGGCTGGCGCGGCGCCACGGCGCGGCGTGCGCGGCGTTCCTGACGCAGACGTGCGCC 477
consensus_13718#1 ------------------------------------------------------------
consensus_13718#0 GTGGACGTGGTGTACACGCACGCGCGCTCCGGGCGCCTCCCGGTGCCGGTGGGGGAGGCG 537
consensus_13718#1 ------------------------------------------------------------
consensus_13718#0 GACGGGCCGCTCCGGCTGCCCGGGCTGCCGGTGGAGCTCGACGCCGGCGACGTGCCGACG 597
consensus_13718#1 ------------------------------------------------------------
consensus_13718#0 TTCCTGGCCGCCCACGACACGCACCACCCGTCCATGCGCGCGCTGCTGATGAACCAGTTC 657
consensus_13718#1 ------------------------------------------------------------
consensus_13718#0 GTCGGCCTCGACAACGTCGACCACGTGTTCGTCAACTCGTTCTACGAGCTCGAGCCTCAN 717
consensus_13718#1 ------------------------------------------------------------
consensus_13718#0 GAAGCGGAGTACATGGCGGCGACATGGGGCGCGAGGACGATCGGGCCGACCGTGCC 773
consensus_13718#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||