These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1562 fasta sequence [ACCAAGATCCAATCCTCGCGAGCAGAATCGATGGCGACGGCGGCGGTGATGGCTGCTGTACCCTCGTCTTCGCCGGCCGACGCGGCGGAGGCTGTGGTTATGACGGAGGCGATGCCTTCTCTCCCGCAACGCCAGCAGCCGGTGTTCGTCGAGGGCAGAGGCGGGAAGCTGCGTGACCACGCCTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCTCCAATTTCGTCGCTCTGTACAACCGCGACGACGTGGAGTCTATCGGGCTGGACGACGCGGCTAGGAGGCTCGGCGTGGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCGTAGGGATCCTCGTGAGGAAGGCCAAGAATCGTTATTCTTGGATAGGCTTCGGCGGCGTCCCAATGGCATTGCGAGAACTCAAGGAGAGGGCATTGAGAGAGAAGTCTGGATTGGCTCCTCTGCCCGTGGAGGAGCCGTCTGCAGCCATTATGTCGGATGACGAAGATGAAGATAAGATGGGTGACGCTGATGGTGATACCGAGAGCGAGAAGCTGAGTCAACCAGTTGACAACCCTTCTGACAACAAGCCAGGCGCACCTCGCTGCCGGCTTAGATCTGACCATAGGAAGGAGAAGTCGCTTGGGTTGCTCACGCAGAATTTCGTGAAACTCTTCCTGACCATGGAGGTTGACACAATCTCACTTGATGAAGCTGCAAAGCTGCTACTTGGAGAAGGTCACGCAGAGAACAGTATGAGAACTAAAGTCCGGAGACTGTATGACATTGCTAACGTGCTGTCATCACTGAATTTCATTGATAAGATACAACAGGCAGACTCAAGGAAACCTGCATTCCGGTGGTTGGGCTCAGCGGGGAAACCAAAAGCTGAAAATGGTGTCACAATCGCAGTACCTCCACCAGGGAAGACCATATCGAACAAGAGAGCATTTGGGACTGAACTCACTAACATTGACATAAACAGAAGCAGACTGGACTCAACAATCCCAAAGAAAGCAAAGCTGACACTGAGTGGTGGTGAAATTTTGAAGAACTGCAAATTGTCAGTGCAGAAACAGCTCGGGCAGGGTAGCAAGGGTGGTTTTGTTTATGGGCCTTTCCACCCTGCTGGTGCAAGAAAACAAGAGCTTGACAATGGTAATAAAGGACACACAGATAATGTTCAAAACTGGGAGAGCCTTGCTGCTTCATTTCGACCACAATACCAGAACCAAGCATTGGGCGATCTTTTTGCTCATTATGTGGAAGCCTGGAAATCGTGGTACTCTGAATTTGCGCAAGGCAGCAGCATGATGCAGCAGCACTTTGGCATGCCTGTCATTAACCAGTTTTTGTAGTCAAATCATTAATCTCAAGCACTGTATTTCTTACCGCGTGCTTGGGATTTTACCTGTACAATTTGTCAGAAAATGAGGGAACAAAGACATGACCTAGGCCTAGGATCCATTGTATTTACTCAATGCAGGAAATATCCAGGCTATTCAGTCCAAAAGATAAACTCGCCTCATTGTTAGGCATGTAACTGTTAATTCATCTAGCTATA] [+] EMBL AK111537 [ACCAAGATCCAATCCTCGCGAGCAGAATCGATGGCGACGGCGGCGGTGATGGCTGCTGTACCCTCGTCTTCGCCGGCCGACGCGGCGGAGGCTGTGGTTATGACGGAGGCGATGCCTTCTCTCCCGCAACGCCAGCAGCCGGTGTTCGTCGAGGGCAGAGGCGGGAAGCTGCGTGACCACGCCTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCTCCAATTTCGTCGCTCTGTACAACCGCGACGACGTGGAGTCTATCGGGCTGGACGACGCGGCTAGGAGGCTCGGCGTGGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCGTAGGGATCCTCGTGAGGAAGGCCAAGAATCGTTATTCTTGGATAGGCTTCGGCGGCGTCCCAATGGCATTGCGAGAACTCAAGGAGAGGGCATTGAGAGAGAAGTCTGGATTGGCTCCTCTGCCCGTGGAGGAGCCGTCTGCAGCCATTATGTCGGATGACGAAGATGAAGATAAGATGGGTGACGCTGATGGTGATACCGAGAGCGAGAAGCTGAGTCAACCAGTTGACAACCCTTCTGACAACAAGCCAGGCGCACCTCGCTGCCGGCTTAGATCTGACCATAGGAAGGAGAAGTCGCTTGGGTTGCTCACGCAGAATTTCGTGAAACTCTTCCTGACCATGGAGGTTGACACAATCTCACTTGATGAAGCTGCAAAGCTGCTACTTGGAGAAGGTCACGCAGAGAACAGTATGAGAACTAAAGTCCGGAGACTGTATGACATTGCTAACGTGCTGTCATCACTGAATTTCATTGATAAGATACAACAGGCAGACTCAAGGAAACCTGCATTCCGGTGGTTGGGCTCAGCGGGGAAACCAAAAGCTGAAAATGGTGTCACAATCGCAGTACCTCCACCAGGGAAGACCATATCGAACAAGAGAGCATTTGGGACTGAACTCACTAACATTGACATAAACAGAAGCAGACTGGACTCAACAATCCCAAAGAAAGCAAAGCTGACACTGAGTGGTGGTGAAATTTTGAAGAACTGCAAATTGTCAGTGCAGAAACAGCTCGGGCAGGGTAGCAAGGGTGGTTTTGTTTATGGGCCTTTCCACCCTGCTGGTGCAAGAAAACAAGAGCTTGACAATGGTAATAAAGGACACACAGATAATGTTCAAAACTGGGAGAGCCTTGCTGCTTCATTTCGACCACAATACCAGAACCAAGCATTGGGCGATCTTTTTGCTCATTATGTGGAAGCCTGGAAATCGTGGTACTCTGAATTTGCGCAAGGCAGCAGCATGATGCAGCAGCACTTTGGCATGCCTGTCATTAACCAGTTTTTGTAGTCAAATCATTAATCTCAAGCACTGTATTTCTTACCGCGTGCTTGGGATTTTACCTGTACAATTTGTCAGAAAATGAGGGAACAAAGACATGACCTAGGCCTAGGATCCATTGTATTTACTCAATGCAGGAAATATCCAGGCTATTCAGTCCAAAAGATAAACTCGCCTCATTGTTAGGCATGTAACTGTTAATTCATCTAGCTATA] consensusID : consensus_1373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1511 fasta sequence [CTCCCGCTCGCCGAAACCCTCGCCGTCGCCGCGCCATGGCCGCCGCCGCCGATGCTCCCCCGCCTCCTCCGGAGGTCGCCCCGCCCGCGCCCGCGCCCGCCCCCGCGCCGGCGCCATATCAGCCGCCGCGGCTGGCGGTGGCCGACGGAGCGGGAGGTGGCGGCGGCGGCGGCGGGAAGCCGTGCAGGCACCACGCGTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCACCAACTTCGTGGCGCTGTACGACCGGGAGGACGTGGAGTCGGTGGGGCTGGACGACGCGGCGAGGCGGCTGGGCGTCGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCATCGGGATGCTCGTGAGGAGGGCCAAGAATCGGTATACGTGGATCGGCTTCGGTGGAGTCCCTGCGGCGCTCGCGAAACTCAAGGAGATGTCACTGAGGGCGGTGTCAAGCGTGGCGTCACCGTCGCTGGATGAAACATCTGCTGCTAATGTCTCGGATGATGAGGATGATGACAAGTTAGATGATGCTGAGGGCGATGCGGAGAGCGAGAAGCTCAGCCTCAGCCAGTCCATTGACAATCCTTCTGATAAGCCTGATGCACCCCCTTGCAAGCTTCGATCCGAGCATAGGAAGGAGAAGTCCCTTGGGCTGCTCACTCAGAATTTTGTCAAGCTCTTCCTCACCATGGAGATTGAGACGATCTCACTTGATGAAGCCGCAAAGCGGCTCCTTGGAGAGGGACATGCGGCGAACAATATGAGAACCAAAGTTCGGCGATTGTACGATATTGCCAATGTGCTGTCTTCTTTGAATCTTATTGAGAAGACACAACAGGCGGACTCAAGAAAACCTGCATTCCGGTGGCTGGGCCAGGCAAAACGGAATGAAGGCGTCACGGTTGCTTTACCCCCAACCAAGACGTTGCCTAACAAGAGAGCATTTGGTACTGATCTGACTAACATTGACAATAAGAGGGGTAAGTTGGACTCCACAATGGAGAACAGAGGCAAGCCCACGCAGGATGGTGGCAACCTATTCAATAATTTGCAGAGGCAATTAGGGCAAGAGAACAGGAGCGATTTTGCTTATGGCCCCTTCCACCCTGCTGTTGCAAGGAAACAAGAACATGGTAATCGCACAGTACAAGAGAAGGAGAGGAAGAGCATTCAAGACTGGGAGAACCTTGCTTCTTCTTTCCGTCCGCAATATCAAAATCCAGGACTGAACGATCTTTTTGGCCACTACATGGAAGCAAGGAGGTCATGGTACTCGGATCTCAGGCGAGACAGAGCATCATAAAACCAGATTCAGGCCGGTCCGTTGTAAACAAAATTCTTGTAGGCAGATAAACTCATTTGTTGATGCATGGTTAGGGATTTTTGAGTTATACAAGATGTCACAAAAACAAAGGCTAGTGCTGGCCTTTGATTGATTGTATTTACTCAGTGCAAGAAATTGGAAAGTCGTTTCGTCAATAATACTAGGATACCTGATTGT] [+] EMBL AK120032 [CTCCCGCTCGCCGAAACCCTCGCCGTCGCCGCGCCATGGCCGCCGCCGCCGATGCTCCCCCGCCTCCTCCGGAGGTCGCCCCGCCCGCGCCCGCGCCCGCCCCCGCGCCGGCGCCATATCAGCCGCCGCGGCTGGCGGTGGCCGACGGAGCGGGAGGTGGCGGCGGCGGCGGCGGGAAGCCGTGCAGGCACCACGCGTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCACCAACTTCGTGGCGCTGTACGACCGGGAGGACGTGGAGTCGGTGGGGCTGGACGACGCGGCGAGGCGGCTGGGCGTCGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCATCGGGATGCTCGTGAGGAGGGCCAAGAATCGGTATACGTGGATCGGCTTCGGTGGAGTCCCTGCGGCGCTCGCGAAACTCAAGGAGATGTCACTGAGGGCGGTGTCAAGCGTGGCGTCACCGTCGCTGGATGAAACATCTGCTGCTAATGTCTCGGATGATGAGGATGATGACAAGTTAGATGATGCTGAGGGCGATGCGGAGAGCGAGAAGCTCAGCCTCAGCCAGTCCATTGACAATCCTTCTGATAAGCCTGATGCACCCCCTTGCAAGCTTCGATCCGAGCATAGGAAGGAGAAGTCCCTTGGGCTGCTCACTCAGAATTTTGTCAAGCTCTTCCTCACCATGGAGATTGAGACGATCTCACTTGATGAAGCCGCAAAGCGGCTCCTTGGAGAGGGACATGCGGCGAACAATATGAGAACCAAAGTTCGGCGATTGTACGATATTGCCAATGTGCTGTCTTCTTTGAATCTTATTGAGAAGACACAACAGGCGGACTCAAGAAAACCTGCATTCCGGTGGCTGGGCCAGGCAAAACGGAATGAAGGCGTCACGGTTGCTTTACCCCCAACCAAGACGTTGCCTAACAAGAGAGCATTTGGTACTGATCTGACTAACATTGACAATAAGAGGGGTAAGTTGGACTCCACAATGGAGAACAGAGGCAAGCCCACGCAGGATGGTGGCAACCTATTCAATAATTTGCAGAGGCAATTAGGGCAAGAGAACAGGAGCGATTTTGCTTATGGCCCCTTCCACCCTGCTGTTGCAAGGAAACAAGAACATGGTAATCGCACAGTACAAGAGAAGGAGAGGAAGAGCATTCAAGACTGGGAGAACCTTGCTTCTTCTTTCCGTCCGCAATATCAAAATCCAGGACTGAACGATCTTTTTGGCCACTACATGGAAGCAAGGAGGTCATGGTACTCGGATCTCAGGCGAGACAGAGCATCATAAAACCAGATTCAGGCCGGTCCGTTGTAAACAAAATTCTTGTAGGCAGATAAACTCATTTGTTGATGCATGGTTAGGGATTTTTGAGTTATACAAGATGTCACAAAAACAAAGGCTAGTGCTGGCCTTTGATTGATTGTATTTACTCAGTGCAAGAAATTGGAAAGTCGTTTCGTCAATAATACTAGGATACCTGATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1373#0 ACCAAGATCCAATCCTCGCGAGCAGAATCGATGGCG-ACGGCGGCGGTGATGGCTGCTGT 59 consensus_1373#1 -----CTCCCGCTCGCCGAAACCCTCGCCGTCGCCGCGCCATGGCCGCCGCCGCCGATGC 55 ** ** ** * * ** * ** * *** * ** * ** consensus_1373#0 ACCCTCGTCTTCGCCGG---CCGACGCGGCGGAGGCTGTGGTTATGACGGAGGCGATGCC 116 consensus_1373#1 TCCCCCGCCTCCTCCGGAGGTCGCCCCGCCCGCGCCCGCGCCCGCCCCCGCGCCGGCGCC 115 *** ** ** * **** ** * ** * * * * * * * * * ** *** consensus_1373#0 TTCTCTCCCGCAACGCC----AGCAGCCGGTGTT--------CGTCGAGGGCAGAGGCGG 164 consensus_1373#1 ATATCAGCCGCCGCGGCTGGCGGTGGCCGACGGAGCGGGAGGTGGCGGCGGCGGCGGCGG 175 * ** **** ** * * **** * * ** *** * ***** consensus_1373#0 GAAGCTGCGTG---ACCACGCCTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCTC 221 consensus_1373#1 GAAGCCGTGCAGGCACCACGCGTACAGCCGCAAGCAGAAGTCGCTCGGCCTCCTCTGCAC 235 ***** * * ******* ************************************ * consensus_1373#0 CAATTTCGTCGCTCTGTACAACCGCGACGACGTGGAGTCTATCGGGCTGGACGACGCGGC 281 consensus_1373#1 CAACTTCGTGGCGCTGTACGACCGGGAGGACGTGGAGTCGGTGGGGCTGGACGACGCGGC 295 *** ***** ** ****** **** ** *********** * ***************** consensus_1373#0 TAGGAGGCTCGGCGTGGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCGT 341 consensus_1373#1 GAGGCGGCTGGGCGTCGAGAGGCGCCGGATCTACGACATCGTCAACGTGCTCGAGAGCAT 355 *** **** ***** ****************************************** * consensus_1373#0 AGGGATCCTCGTGAGGAAGGCCAAGAATCGTTATTCTTGGATAGGCTTCGGCGGCGTCCC 401 consensus_1373#1 CGGGATGCTCGTGAGGAGGGCCAAGAATCGGTATACGTGGATCGGCTTCGGTGGAGTCCC 415 ***** ********** ************ *** * ***** ******** ** ***** consensus_1373#0 AATGGCATTGCGAGAACTCAAGGAGAGGGCATTGAGAGAGAAGTCTGGATTGGCTCCTCT 461 consensus_1373#1 TGCGGCGCTCGCGAAACTCAAGGAGATGTCACTGAGGGCGGTGTCAAGCGTGGCGTCACC 475 *** * ************ * ** **** * * *** * **** * * consensus_1373#0 GCCCGTGGAGGAGCCGTCTGCAGCCATTATGTCGGATGACGAAGATGAAGATAAGATGGG 521 consensus_1373#1 GTCGCTGGATGAAACATCTGCTGCTAATGTCTCGGATGATGAGGATGATGACAAGTTAGA 535 * * **** ** * ***** ** * * * ******** ** ***** ** *** * * consensus_1373#0 TGACGCTGATGGTGATACCGAGAGCGAGAAGCTGAG--TCAACCAGT----TGACAACCC 575 consensus_1373#1 TGATGCTGAGGGCGATGCGGAGAGCGAGAAGCTCAGCCTCAGCCAGTCCATTGACAATCC 595 *** ***** ** *** * ************** ** *** ***** ****** ** consensus_1373#0 TTCTGACAACAAGCCAGGCGCACCTCGCTGCCGGCTTAGATCTGACCATAGGAAGGAGAA 635 consensus_1373#1 TTCTGAT---AAGCCTGATGCACCCCCTTGCAAGCTTCGATCCGAGCATAGGAAGGAGAA 652 ****** ***** * ***** * *** **** **** ** ************** consensus_1373#0 GTCGCTTGGGTTGCTCACGCAGAATTTCGTGAAACTCTTCCTGACCATGGAGGTTGACAC 695 consensus_1373#1 GTCCCTTGGGCTGCTCACTCAGAATTTTGTCAAGCTCTTCCTCACCATGGAGATTGAGAC 712 *** ****** ******* ******** ** ** ******** ********* **** ** consensus_1373#0 AATCTCACTTGATGAAGCTGCAAAGCTGCTACTTGGAGAAGGTCACGCAGAGAACAGTAT 755 consensus_1373#1 GATCTCACTTGATGAAGCCGCAAAGCGGCTCCTTGGAGAGGGACATGCGGCGAACAATAT 772 ***************** ******* *** ******** ** ** ** * ***** *** consensus_1373#0 GAGAACTAAAGTCCGGAGACTGTATGACATTGCTAACGTGCTGTCATCACTGAATTTCAT 815 consensus_1373#1 GAGAACCAAAGTTCGGCGATTGTACGATATTGCCAATGTGCTGTCTTCTTTGAATCTTAT 832 ****** ***** *** ** **** ** ***** ** ******** ** ***** * ** consensus_1373#0 TGATAAGATACAACAGGCAGACTCAAGGAAACCTGCATTCCGGTGGTTGGGCTCAGCGGG 875 consensus_1373#1 TGAGAAGACACAACAGGCGGACTCAAGAAAACCTGCATTCCGGTGGCTGGGC----CAGG 888 *** **** ********* ******** ****************** ***** * ** consensus_1373#0 GAAACCAAAAGCTGAAAATGGTGTCACAATCGCAGTACCTCCACCAGGGAAGACCATATC 935 consensus_1373#1 CAAAACGGAA--TGAA---GGCGTCACGGTTGCTTTACCCCCAAC---CAAGACGTTGCC 940 *** * ** **** ** ***** * ** **** *** * ***** * * consensus_1373#0 GAACAAGAGAGCATTTGGGACTGAACTCACTAACATTGACATAAACAGAAGCAGACTGGA 995 consensus_1373#1 TAACAAGAGAGCATTTGGTACTGATCTGACTAACATTGACAATAAGAGGGGTAAGTTGGA 1000 ***************** ***** ** ************* ** ** * * **** consensus_1373#0 CTCAACAATCCCAAAGAAAGCAAAGCTGACACTGAGTGGTGGTGAAATTTTGAAGAACTG 1055 consensus_1373#1 CTCCACAATGGAGAACAGAGGCAAGCCCACGCAGGATGGTGGCAACCTATTCAATAATT- 1059 *** ***** ** * ** **** ** * * ****** * * ** ** ** * consensus_1373#0 CAAATTGTCAGTGCAGAAACAGCTCGGGCAGGGTAGCAAGGGTGGTTTTGTTTATGGGCC 1115 consensus_1373#1 -----------TGCAGAGGCAATTAGGGCAAGAGAACAGGAGCGATTTTGCTTATGGCCC 1108 ****** ** * ***** * * ** * * * ***** ****** ** consensus_1373#0 TTTCCACCCTGCTGGTGCAAGAAAACAAGAGCTTGACAATGGTA----ATAAAGGACACA 1171 consensus_1373#1 CTTCCACCCTGCTGTTGCAAGGAAACAAGAACATGGTAATCGCACAGTACAAGAGAAGGA 1168 ************* ****** ******** * ** *** * * * ** ** * consensus_1373#0 CAG--ATAATGTTCAAAACTGGGAGAGCCTTGCTGCTTCATTTCGACCACAATACCAGAA 1229 consensus_1373#1 GAGGAAGAGCATTCAAGACTGGGAGAACCTTGCTTCTTCTTTCCGTCCGCAATATCAAAA 1228 ** * * ***** ********* ******* **** ** ** ** ***** ** ** consensus_1373#0 CCAAGCATTGGGCGATCTTTTTGCTCATTATGTGGAAGCCTGGAAATCGTGGTACTCTGA 1289 consensus_1373#1 TCCAGGACTGAACGATCTTTTTGGCCACTACATGGAAGCAAGGAGGTCATGGTACTCGGA 1288 * ** * ** *********** ** ** ******* *** ** ******** ** consensus_1373#0 ATTTGCGCAAGGCAGCAGCATGATGCAGCAGCACTTTGGCATGCCTGTCATTAACCAG-T 1348 consensus_1373#1 TCTCAGGCGAGACAG-AGCATCATAAAACCAGATTCAGGCCGGTCCGTTGTAAACAAAAT 1347 * ** ** *** ***** ** * * * * *** * * ** * *** * * consensus_1373#0 TTTTGTAGTCAAATCATTAATCTCAAGCACTGTATTTCTTACCGCGTGCTT-GGGATTTT 1407 consensus_1373#1 TCTTGTAGGCAGAT----AAACTCA---------TTTGTTGATGCATGGTTAGGGATTTT 1394 * ****** ** ** ** **** *** ** ** ** ** ******** consensus_1373#0 --ACCTGTACAATTTGTCAGAAAATGAGGGAACAAAGACATGACCTAGGCCTAGGATCCA 1465 consensus_1373#1 TGAGTTATACAAGATGTCACAAAA-------ACAAAGGCTAGTGCT-GGCCTTTGATTGA 1446 * * ***** ***** **** ****** * * ** ***** *** * consensus_1373#0 TTGTATTTACTCAATGCAGGAAATATCCAGGCTATTCAGTCCAAAAGATAAACTCGCCTC 1525 consensus_1373#1 TTGTATTTACTCAGTGCAAGAAATTGGAAAGTCGTTTCGTCAATAATACTAGGATACCTG 1506 ************* **** ***** * * ** *** * ** * * *** consensus_1373#0 ATTGTTAGGCATGTAACTGTTAATTCATCTAGCTATA 1562 consensus_1373#1 ATTGT-------------------------------- 1511 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||