These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1032 fasta sequence [GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC-GTCGACCTCGC-GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC-GTTGGTCGAC-GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC-GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC-CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC-AGACATACAGTGCTAGTGCTATTGCCA-TTGTAAAAAAAAAA] [+] EMBL AK098972 [GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCATATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCC CAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCT ] [+] EMBL AK105926 [ GTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTA ] [+] EMBL AK067361 [ TCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAG ] [+] EMBL AK104213 [ CAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTAT ] [+] EMBL CB681094 [ GATGGTCCTTGGAATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAGCCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCTAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCCACGGGGTGGTGCCGGACGCGGACTGACGCCGGGGAGTTCGCCACGAAAGGCCAGGCTCGTGTTGCAACTGCTGCTGCTTCCGCCGCTGC CAAGTGAa ] [+] EMBL BI806145 [ TAT GTTTGCG TTTGA GGC GC AC GAGGA GAGA GGCCGCGAA GCCGACGAG CGCT GC GCGATGGC CAGCTGGAGAAGGCGTTC CCGA GT GCC CGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGCCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATACAAGACATACAGTGCTAGTGCTATTGCCATTTGTAAAAAAAAAA] [-] EMBL CB639275 [ GTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTAGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTATTGCCA TTGTAc ] [+] EMBL BI807651 [ AGGCGTTC CCGAGGTGCACGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCCGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAaaaaaaa ] [+] EMBL BM038148 [ tcCCGA GT GCACCGAAGAACGGGAA CCCTTCTTC GC GCGACACCGTCGGGTACAGTCGACCTCGCAGCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCAGTTGGTCGACAGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGCACAA GGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGCACAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGT CCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCCGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTAaaaaaaaaa ] consensusID : consensus_13739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence [TCCGACAAAACCTCATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGCCGCGGCGCCATCCGTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACAACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGGCGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTCGCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGGCGCTGCTGGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGAAGCGGTTCGTGGAGGCCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTCGGCAAGAAGCTGCAGGCTCGTGCAGCAGCGGCTTCCACC-GCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAAA] [+] EMBL AF402800 [TCCGACAAAACCTCATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGCCGCGGCGCCATCCGTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACAACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGGCGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTCGCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGGCGCTGCTGGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGAAGCGGTTCGTGGAGGCCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTCGGCAAGAAGCTGCAGGCTCGTGCAGCAGCGGCTTCCACC GCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAA ] [+] EMBL OSS12005A [ CATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCG GTGCGCATCG GTNCAACATCAAGGGCGTGAG TACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAG CCATCTNCGAGTCGNTCGTNATCGTGCAGTACGTCGACGAGGTC ] [+] EMBL AU088674 [ AGCT CAGGCTCGTGCA CAGCGGCTTCCACCNGCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTGAAAAAAAAAA] consensusID : consensus_13739#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAGGTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGACGCCCGGCAAGAACCCCGCTCCCTGGCGCGTGGGCGGAGCGGTTCGTGGAGGGTCAGGCNNGCAAGGGGGGTGGTGCCGGACGCCGGACGACGCCCGGGAGTTCGCCAGGAAAGTCCAGGCTTCGGTAGCAACTTGTGGTTGGTTCCACCGTTGGCAAGTGAGGTGGAAAATCGTTTTCGAATGGGACAATTGGGGTTCCTGGGAATAAAAAAAAAATCGTGGTATTTACAGGGGGCATTTTTCAAGGCAGGGGGTAGGTTTATTTGGGGGGGGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGGGTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG] [+] EMBL BE040843 [GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAGGTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGACGCCCGGCAAGAACCCCGCTCCCTGGCGCGTGGGCGGAGCGGTTCGTGGAGGGTCAGGCNNGCAAGGGGGGTGGTGCCGGACGCCGGACGACGCCCGGGAGTTCGCCAGGAAAGTCCAGGCTTCGGTAGCAACTTGTGGTTGGTTCCACCGTTGGCAAGTGAGGTGGAAAATCGTTTTCGAATGGGACAATTGGGGTTCCTGGGAATAAAAAAAAAATCGTGGTATTTACAGGGGGCATTTTTCAAGGCAGGGGGTAGGTTTATTTGGGGGGGGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGGGTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG] consensusID : consensus_13739#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CCTGGCAACTTTTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGCAGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTCGTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGAGTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTGCCAAGTGAGTGGAAAATCGTTGTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCAGTGTTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTGTGGGGTTATTAATGTGTGAAAGTGCTGGACATGTATGCAGTGTNATGTTCTCCGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCTGCTCTAA] [+] EMBL BQ907921 [CCTGGCAACTTTTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGCAGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTCGTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGAGTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTGCCAAGTGAGTGGAAAATCGTTGTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCAGTGTTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTGTGGGGTTATTAATGTGTGAAAGTGCTGGACATGTATGCAGTGTNATGTTCTCCGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCTGCTCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13739#1 ----------------------------TCCGACAAAACCTCATCTAGAGCATCGAGCTG 32 consensus_13739#2 ------------------------------------------------------------ consensus_13739#0 GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTC-AGTATCCAGCCG 59 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 AGAGGTAA-----GGAAGAGAAG----AAAACAATGGCGGGGAAAGACGACGACGTGAAG 83 consensus_13739#2 ------------------------------------------------------------ consensus_13739#0 AGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAG 119 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 GTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAG 143 consensus_13739#2 ------------------------------------------------------------ consensus_13739#0 GTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAG 179 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 GGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACC 203 consensus_13739#2 ------------------------------------------------------------ consensus_13739#0 GGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGC 239 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 TCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAG 263 consensus_13739#2 ------------------------------------------------------------ consensus_13739#0 TCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAG 299 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 TCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGC---------CGCGGCGCCATCC 314 consensus_13739#2 ------GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCC 54 consensus_13739#0 TCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCC 359 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 GTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 374 consensus_13739#2 ATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 114 consensus_13739#0 ATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 419 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 AACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCG 434 consensus_13739#2 GACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCG 174 consensus_13739#0 GACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCG 479 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 GCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGG---CGTTCGCGGAG 491 consensus_13739#2 GCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAG 234 consensus_13739#0 GCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGG---CGTTCGCCGAG 536 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 TGCGCGG------GCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTC 545 consensus_13739#2 GTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTC 294 consensus_13739#0 GTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTC 596 consensus_13739#3 ------------------------------------------------------------ consensus_13739#1 GCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGC--AGGTTGTTCGG-CGT-GGC 601 consensus_13739#2 GCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGC--AGGTTGCACGG-CGT-GGC 350 consensus_13739#0 GCGCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGC--AGGTTGCACGG-CGT-GGC 652 consensus_13739#3 ------CCTGGCAACTT-TTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGC 53 ***** * ** * ***** ***** *** *** *** consensus_13739#1 -GCTGCTGGACGCC---GGCAAGA-CCCCGCTCCTGGC-GGCGTGGGCGAAGC--GGTTC 653 consensus_13739#2 -GTTGGTCGACGCCC--GGCAAGAACCCCGCTCCCTGG-CGCGTGGGCGGAGC--GGTTC 404 consensus_13739#0 -GTTGGTCGACGCC---GGCAAGA-CCCCGCTCCTGGC-GGCGTGGGCGGAGC--GGTTC 704 consensus_13739#3 AGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTC 113 * ** * **** **** ********* * ****** * ***** consensus_13739#1 GTGGAGGCCGAGGCGGCCAAGGGGG---TGGTGCC--GGACGCTGG-T-GTGGCGGTGGA 706 consensus_13739#2 GTGGAGGGTCAGGCNNGCAAGGGGGG--TGGTGCC--GGACGCCGGAC-GACGCCCGGGA 459 consensus_13739#0 GTGGAGGTCGAGGCGGCCAAGGGGG---TGGTGCC--GGACGC-GGAC-GACGCCGTGGA 757 consensus_13739#3 GTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGA 173 ******* ** ****** * *** * ****** ** * ** *** consensus_13739#1 GCTCGGC-AAGAAGCTGCAGGCTC-GTGCAGCA-GCG--------GCTTC-CACCGCTGC 754 consensus_13739#2 GTTCGCC-AGGAAAGTCCAGGCTT-CGGTAGCA-ACTTG-TGGTTGGTTC-CACCGTTGG 514 consensus_13739#0 GTTCGCC-AGGAAAGTCCAGGCTC-GTGTAGCA-GCT-G-CTGCTGCTTC-CACCGCTGC 811 consensus_13739#3 GTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTG 233 * *** * * *** * ****** * **** * * *** ***** consensus_13739#1 CTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGA-TGGGTTCATGTGAA 813 consensus_13739#2 C-AAGTGAGGTGGAA-AATCGTT---TTCGAATGGGACAATTGGGGTTCCTGGGAATAAA 569 consensus_13739#0 C-AAGTGAG-TGGAA-AATCGTT---TTCGATTGGATCA--TTGGGTTTCTTGTAATAAA 863 consensus_13739#3 CCAAGTGAG-TGGAA-AATCGTT--GTTCGATTGGATCA--TTGGGTTTCTTGTAATAAA 287 * **** ***** *** ** **** *** ** * * * * * ** consensus_13739#1 GATAAAACC-GTGCGTTATATTAGAGTGCCATTT-GAAGTCTTGT--TTAGTTCATTTGT 869 consensus_13739#2 AAAAAAATC-GTGGTATTTACAGGGGGCATTTTT-CAAGGCAGGGGGTAGGTTTATTTGG 627 consensus_13739#0 GAAAAAATC-GTG----TTATTACAGTGCCATTTTCAAGTCATGG--TTAGTTTATTTGT 916 consensus_13739#3 GAAAAAATCAGTG----TTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTG 343 * **** * *** ** * ** * * *** ** * consensus_13739#1 GGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTG-TATATATATGTATGCTCTCTGA 928 consensus_13739#2 GGGG--GGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGG 685 consensus_13739#0 GGGG---TTAT-TAATGTGTAAA-GTCTGGACATGTA-TGCGTGT---TATGTTCTCTGG 967 consensus_13739#3 TGGG--GTTAT-TAATGTGTGAAAGTGCTGG-ACATG-TATGCAGTGTNATGTTCTCCGG 398 *** *** ** * * * * * * ** * * consensus_13739#1 TTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAAA-------- 980 consensus_13739#2 GTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG----------- 734 consensus_13739#0 TTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATTGCCATTGTAAAAA 1027 consensus_13739#3 TTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCT 458 ** ***** * * * ** * consensus_13739#1 ------- consensus_13739#2 ------- consensus_13739#0 AAAAA-- 1032 consensus_13739#3 GCTCTAA 465 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||