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Oryza sativa
cluster # 13739 cluster # 13739       Sequences # 14       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13739#0 length = 1032 sequences # 9  
consensus_13739#1 length = 980 sequences # 3  
consensus_13739#2 length = 734 sequences # 1  
consensus_13739#3 length = 465 sequences # 1  

consensusID : consensus_13739#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1032
fasta sequence
                              [GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC-GTCGACCTCGC-GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC-GTTGGTCGAC-GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC-GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC-CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC-AGACATACAGTGCTAGTGCTATTGCCA-TTGTAAAAAAAAAA]

[+] EMBL AK098972             [GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCATATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCC CAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCT                                               ]
[+] EMBL AK105926             [ GTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTA                     ]
[+] EMBL AK067361             [  TCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAG                          ]
[+] EMBL AK104213             [   CAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGAGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGGTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGGGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCTCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTAT                                                                                                                          ]
[+] EMBL CB681094             [                                                                                                                                                                                                                                                                                                                                                                                                                                        GATGGTCCTTGGAATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAGCCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCTAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCCACGGGGTGGTGCCGGACGCGGACTGACGCCGGGGAGTTCGCCACGAAAGGCCAGGCTCGTGTTGCAACTGCTGCTGCTTCCGCCGCTGC CAAGTGAa                                                                                                                                                                                                                       ]
[+] EMBL BI806145             [                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAT GTTTGCG TTTGA GGC GC AC GAGGA GAGA GGCCGCGAA GCCGACGAG CGCT GC GCGATGGC CAGCTGGAGAAGGCGTTC CCGA GT GCC CGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGCCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATACAAGACATACAGTGCTAGTGCTATTGCCATTTGTAAAAAAAAAA]
[-] EMBL CB639275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTAGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTATTGCCA TTGTAc        ]
[+] EMBL BI807651             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGCGTTC CCGAGGTGCACGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTAC GTCGACCTCGC GCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGC GTTGGTCGAC GCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGC CAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCCGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAaaaaaaa                    ]
[+] EMBL BM038148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tcCCGA GT GCACCGAAGAACGGGAA CCCTTCTTC GC GCGACACCGTCGGGTACAGTCGACCTCGCAGCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCAGTTGGTCGACAGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGCACAA GGGGTGGTGCCGGACGCGGAC GACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGCACAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGT CCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGTTCTCCGGTTCATCGATCATAAGCAGCTATAC AGACATACAGTGCTAGTGCTAaaaaaaaaa            ]


>consensus_13739#0 GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTCAGTATCCAGCCGA GAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAGG TGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAGG GCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGCT CCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAGT CGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCA TCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACG ACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGG CGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGCGTTCGCCGAGGTGG CCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGC TCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCG ACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGAGCGGTTCGTGGAGGTCGAGGCGG CCAAGGGGGTGGTGCCGGACGCGGACGACGCCGTGGAGTTCGCCAGGAAAGTCCAGGCTC GTGTAGCAGCTGCTGCTGCTTCCACCGCTGCCAAGTGAGTGGAAAATCGTTTTCGATTGG ATCATTGGGTTTCTTGTAATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCA TGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGTCTGGACATGTATGCGTGTTATGT TCTCTGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATTGCCATT GTAAAAAAAAAA



consensusID : consensus_13739#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 980
fasta sequence
                              [TCCGACAAAACCTCATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGCCGCGGCGCCATCCGTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACAACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGGCGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTCGCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGGCGCTGCTGGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGAAGCGGTTCGTGGAGGCCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTCGGCAAGAAGCTGCAGGCTCGTGCAGCAGCGGCTTCCACC-GCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAAA]

[+] EMBL AF402800             [TCCGACAAAACCTCATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGCCGCGGCGCCATCCGTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACAACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGGCGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTCGCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGGCGCTGCTGGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGAAGCGGTTCGTGGAGGCCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTCGGCAAGAAGCTGCAGGCTCGTGCAGCAGCGGCTTCCACC GCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAA ]
[+] EMBL OSS12005A            [             CATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGGCGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCG GTGCGCATCG GTNCAACATCAAGGGCGTGAG TACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAG CCATCTNCGAGTCGNTCGTNATCGTGCAGTACGTCGACGAGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU088674             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGCT CAGGCTCGTGCA CAGCGGCTTCCACCNGCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTGAAAAAAAAAA]


>consensus_13739#1 TCCGACAAAACCTCATCTAGAGCATCGAGCTGAGAGGTAAGGAAGAGAAGAAAACAATGG CGGGGAAAGACGACGACGTGAAGGTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCG TGCGCATCGCGCTCAACATCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCA ACAAGAGCGAGCTCCTCCTCACCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCC ACGGCGGCAAGCCCATCTCCGAGTCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGG CCGCGGCGCCATCCGTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGG CCGCCTACGTCGACAACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGG AGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGG CGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCG ACCTCGCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGG CGCTGCTGGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGAAGCGGTTCGTGGAGG CCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTCGGCAAGAAGC TGCAGGCTCGTGCAGCAGCGGCTTCCACCGCTGCCTGAGTGGCTTGGAATAATTATTCGT TTCGGATGGATCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTG CCATTTGAAGTCTTGTTTAGTTCATTTGTGGGGCTATTATGTAAAGTCTAAGCATGCGTG CGTGTGTATATATATGTATGCTCTCTGATTCATCGATCATTTGCAGATATACAGTGCTAT TGTTGTGTTAAAAAAAAAAA



consensusID : consensus_13739#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 734
fasta sequence
                              [GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAGGTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGACGCCCGGCAAGAACCCCGCTCCCTGGCGCGTGGGCGGAGCGGTTCGTGGAGGGTCAGGCNNGCAAGGGGGGTGGTGCCGGACGCCGGACGACGCCCGGGAGTTCGCCAGGAAAGTCCAGGCTTCGGTAGCAACTTGTGGTTGGTTCCACCGTTGGCAAGTGAGGTGGAAAATCGTTTTCGAATGGGACAATTGGGGTTCCTGGGAATAAAAAAAAAATCGTGGTATTTACAGGGGGCATTTTTCAAGGCAGGGGGTAGGTTTATTTGGGGGGGGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGGGTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG]

[+] EMBL BE040843             [GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAGGTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGACGCCCGGCAAGAACCCCGCTCCCTGGCGCGTGGGCGGAGCGGTTCGTGGAGGGTCAGGCNNGCAAGGGGGGTGGTGCCGGACGCCGGACGACGCCCGGGAGTTCGCCAGGAAAGTCCAGGCTTCGGTAGCAACTTGTGGTTGGTTCCACCGTTGGCAAGTGAGGTGGAAAATCGTTTTCGAATGGGACAATTGGGGTTCCTGGGAATAAAAAAAAAATCGTGGTATTTACAGGGGGCATTTTTCAAGGCAGGGGGTAGGTTTATTTGGGGGGGGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGGGTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG]


>consensus_13739#2 GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCCATCCTC CCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAG ATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCGGCGAAG GCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAGGTGGCA GCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTC GGTTGCAACCTGCACTNTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGAC GCCCGGCAAGAACCCCGCTCCCTGGCGCGTGGGCGGAGCGGTTCGTGGAGGGTCAGGCNN GCAAGGGGGGTGGTGCCGGACGCCGGACGACGCCCGGGAGTTCGCCAGGAAAGTCCAGGC TTCGGTAGCAACTTGTGGTTGGTTCCACCGTTGGCAAGTGAGGTGGAAAATCGTTTTCGA ATGGGACAATTGGGGTTCCTGGGAATAAAAAAAAAATCGTGGTATTTACAGGGGGCATTT TTCAAGGCAGGGGGTAGGTTTATTTGGGGGGGGTATTAAAAGGGTAAAAGCCTTGGCATT TGATCCGGGGTTTTGTTCTCCCGGGGTCTTCGATATATAAGGGCGTTTCCAAACTACCGG GGGATGGGGTTTTG



consensusID : consensus_13739#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence
                              [CCTGGCAACTTTTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGCAGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTCGTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGAGTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTGCCAAGTGAGTGGAAAATCGTTGTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCAGTGTTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTGTGGGGTTATTAATGTGTGAAAGTGCTGGACATGTATGCAGTGTNATGTTCTCCGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCTGCTCTAA]

[+] EMBL BQ907921             [CCTGGCAACTTTTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGCAGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTCGTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGAGTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTGCCAAGTGAGTGGAAAATCGTTGTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCAGTGTTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTGTGGGGTTATTAATGTGTGAAAGTGCTGGACATGTATGCAGTGTNATGTTCTCCGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCTGCTCTAA]


>consensus_13739#3 CCTGGCAACTTTTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGCAGTTGGT CGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTCGTGGAGG TCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGAGTTCGGC CAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTGCCAAGTG AGTGGAAAATCGTTGTTCGATTGGATCATTGGGTTTCTTGTAATAAAGAAAAAATCAGTG TTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTGTGGGGTTATTAATGTGT GAAAGTGCTGGACATGTATGCAGTGTNATGTTCTCCGGTTCATCGATCATAAGCAGCTAT ACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCTGCTCTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13739#1      ----------------------------TCCGACAAAACCTCATCTAGAGCATCGAGCTG 32
consensus_13739#2      ------------------------------------------------------------
consensus_13739#0      GGTCAGTCGCACAGATAACACCGTAGTATCAGACAAGACCTCATCTC-AGTATCCAGCCG 59
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      AGAGGTAA-----GGAAGAGAAG----AAAACAATGGCGGGGAAAGACGACGACGTGAAG 83
consensus_13739#2      ------------------------------------------------------------
consensus_13739#0      AGAGGAAATCAAAGGAAGAGAAGGGGAAAAGCAATGGCGGGCAAGGACGACGACGTGAAG 119
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      GTGCTCGGCGTGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATCGCGCTCAACATCAAG 143
consensus_13739#2      ------------------------------------------------------------
consensus_13739#0      GTGCTCGGCCTGGTGATGAGCCCCTTCGCGATCCGCGTATGCATCGCGCTCAAGTTGAAG 179
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      GGCGTGAGCTACGAGTACGTCGAGGAGGACATCTTCAACAAGAGCGAGCTCCTCCTCACC 203
consensus_13739#2      ------------------------------------------------------------
consensus_13739#0      GGCGTGAGCTACGAGTACATCGAGGAGGACCTCGCCAACAAGAGCGAGCTCCTCCTCAGC 239
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      TCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGGCGGCAAGCCCATCTCCGAG 263
consensus_13739#2      ------------------------------------------------------------
consensus_13739#0      TCCAACCCGGTGCACAAGAAGATCCCCGTCCTCATCCATGGCGGCAAGCCCGTCTCCGAG 299
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      TCGCTCGTCATCGTGCAGTACGTCGACGAGGTCTGGGC---------CGCGGCGCCATCC 314
consensus_13739#2      ------GGCGTCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCC 54
consensus_13739#0      TCGCTCGTCATCGTGCAGTACGTCGACGAGGCCTGGGCGCCCTCCCCCACGTCGCCCTCC 359
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      GTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 374
consensus_13739#2      ATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 114
consensus_13739#0      ATCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGAC 419
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      AACAACATGTTCCCTGGAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCG 434
consensus_13739#2      GACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCG 174
consensus_13739#0      GACAAGATGGTCCCTGGTATGGTTGGCGTTTTGAGGGCGGCGACGGAGGAGGAGAGGGCG 479
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      GCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAGCTGGAGAAGG---CGTTCGCGGAG 491
consensus_13739#2      GCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGGGCGTNNTCGCCGAG 234
consensus_13739#0      GCGAAGGCCGACGAGACGCTGGCGGCGATGGCGCAGCTGGAGAAGG---CGTTCGCCGAG 536
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      TGCGCGG------GCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTC 545
consensus_13739#2      GTGGCAGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTC 294
consensus_13739#0      GTGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTC 596
consensus_13739#3      ------------------------------------------------------------
                                                                                   

consensus_13739#1      GCGCTCGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGC--AGGTTGTTCGG-CGT-GGC 601
consensus_13739#2      GCGCTCGGTTGCAACCTGCACTNTCTCGAAGCGATCCGC--AGGTTGCACGG-CGT-GGC 350
consensus_13739#0      GCGCTCGGTTGCAACCTGCACTTTCTCGAAGCGATCCGC--AGGTTGCACGG-CGT-GGC 652
consensus_13739#3      ------CCTGGCAACTT-TTCTTCCGAAAGCGATTCCGCCAGGGTTGCACGGGCGTTGGC 53
                                 ***** *   **      *     *****   *****  *** *** ***

consensus_13739#1      -GCTGCTGGACGCC---GGCAAGA-CCCCGCTCCTGGC-GGCGTGGGCGAAGC--GGTTC 653
consensus_13739#2      -GTTGGTCGACGCCC--GGCAAGAACCCCGCTCCCTGG-CGCGTGGGCGGAGC--GGTTC 404
consensus_13739#0      -GTTGGTCGACGCC---GGCAAGA-CCCCGCTCCTGGC-GGCGTGGGCGGAGC--GGTTC 704
consensus_13739#3      AGTTGGTCGACGNGCACGGCANAGACCCCGCTCCTGGCAGGCGTGGTCAGGATCAGGTTC 113
                        * ** * ****     ****    *********  *   ****** *       *****

consensus_13739#1      GTGGAGGCCGAGGCGGCCAAGGGGG---TGGTGCC--GGACGCTGG-T-GTGGCGGTGGA 706
consensus_13739#2      GTGGAGGGTCAGGCNNGCAAGGGGGG--TGGTGCC--GGACGCCGGAC-GACGCCCGGGA 459
consensus_13739#0      GTGGAGGTCGAGGCGGCCAAGGGGG---TGGTGCC--GGACGC-GGAC-GACGCCGTGGA 757
consensus_13739#3      GTGGAGGTCAGAGCGGCCAAGGGTGTGTCGGTAGCCAGGACGCAGGACAGACGCCGTGGA 173
                       *******     **   ****** *    ***  *  ****** **   *  **   ***

consensus_13739#1      GCTCGGC-AAGAAGCTGCAGGCTC-GTGCAGCA-GCG--------GCTTC-CACCGCTGC 754
consensus_13739#2      GTTCGCC-AGGAAAGTCCAGGCTT-CGGTAGCA-ACTTG-TGGTTGGTTC-CACCGTTGG 514
consensus_13739#0      GTTCGCC-AGGAAAGTCCAGGCTC-GTGTAGCA-GCT-G-CTGCTGCTTC-CACCGCTGC 811
consensus_13739#3      GTTCGGCCAGGAAAGTCCAGGCTCAGTGTAGCATGCATGCTGGCTGCTTCACACCGCGTG 233
                       * *** * * ***  * ******    * ****  *         * *** *****    

consensus_13739#1      CTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGATCAAATCGA-TGGGTTCATGTGAA 813
consensus_13739#2      C-AAGTGAGGTGGAA-AATCGTT---TTCGAATGGGACAATTGGGGTTCCTGGGAATAAA 569
consensus_13739#0      C-AAGTGAG-TGGAA-AATCGTT---TTCGATTGGATCA--TTGGGTTTCTTGTAATAAA 863
consensus_13739#3      CCAAGTGAG-TGGAA-AATCGTT--GTTCGATTGGATCA--TTGGGTTTCTTGTAATAAA 287
                       *  ****   ***** ***  **   ****  ***  **  * *  *   *     * **

consensus_13739#1      GATAAAACC-GTGCGTTATATTAGAGTGCCATTT-GAAGTCTTGT--TTAGTTCATTTGT 869
consensus_13739#2      AAAAAAATC-GTGGTATTTACAGGGGGCATTTTT-CAAGGCAGGGGGTAGGTTTATTTGG 627
consensus_13739#0      GAAAAAATC-GTG----TTATTACAGTGCCATTTTCAAGTCATGG--TTAGTTTATTTGT 916
consensus_13739#3      GAAAAAATCAGTG----TTATTACAGTGCCATTGTTCAAGTGCATGGTTAGTTTATNTTG 343
                        * **** * ***     **     *     **    *         *  *** ** *  

consensus_13739#1      GGGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTG-TATATATATGTATGCTCTCTGA 928
consensus_13739#2      GGGG--GGTATTAAAAGGGTAAAAGCCTTGGCATTTGATCCGGGGTTTTGTTCTCCCGGG 685
consensus_13739#0      GGGG---TTAT-TAATGTGTAAA-GTCTGGACATGTA-TGCGTGT---TATGTTCTCTGG 967
consensus_13739#3      TGGG--GTTAT-TAATGTGTGAAAGTGCTGG-ACATG-TATGCAGTGTNATGTTCTCCGG 398
                        ***    ***  ** *  * *             *  *           *  ** * * 

consensus_13739#1      TTCATCGATCATTTGCAGATATACAGTGCTATTGTTGTGTTAAAAAAAAAAA-------- 980
consensus_13739#2      GTCTTCGATATATAAGGGCGTTTCCAAACTACCGGGGGATGGGGTTTTG----------- 734
consensus_13739#0      TTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATTGCCATTGTAAAAA 1027
consensus_13739#3      TTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATGCCCATGTACNGCT 458
                        ** *****        *   * *     **  *                          

consensus_13739#1      -------
consensus_13739#2      -------
consensus_13739#0      AAAAA-- 1032
consensus_13739#3      GCTCTAA 465
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)