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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1071 fasta sequence
[ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCCTCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATTAGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGAGGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGGAGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGACGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTACAGGGCGGTGACGAGCGCGTACTACCGCGGCGCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACAAGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCGCCTTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGCACGGCGGATGCGCGACGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTCGACATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAGAGAAGGATTAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT]
[+] EMBL AK111543 [ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCCTCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATTAGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGAGGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGGAGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGACGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTACAGGGCGGTGACGAGCGCGTACTACCGCGGCGCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACAAGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCGCCTTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGCACGGCGGATGCGCGACGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTCGACATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAGAGAAGGATTAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT]
consensusID : consensus_1374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 855 fasta sequence
[GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTCGCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAGAAATACTGGAAAGATCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGCTGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAACTGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATACTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATGCATGTCAGCCAAGACACCAGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAGCTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAGGATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATGCGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCACCGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAACTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGNTGGCGNCTAATTAANAATTTGA]
[+] EMBL CA765964 [GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTCGCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAGAAATACTGGAAAGATCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGCTGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAACTGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATACTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATGCATGTCAGCCAAGACACCAGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAGCTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAGGATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATGCGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCACCGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAACTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGNTGGCGNCTAATTAANAATTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1374#0 ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCC 60
consensus_1374#1 ------------------------------------------------------------
consensus_1374#0 TCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATT 120
consensus_1374#1 ------------------------------------------------------------
consensus_1374#0 AGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGA 180
consensus_1374#1 ------------------------------------------------------------
consensus_1374#0 GGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGG 240
consensus_1374#1 ------------------------------------------------------------
consensus_1374#0 AGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGA 300
consensus_1374#1 ------------------------------------------------------------
consensus_1374#0 CGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCG 360
consensus_1374#1 ----GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCG 56
********************************************************
consensus_1374#0 GCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCT 420
consensus_1374#1 GCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCT 116
************************************************************
consensus_1374#0 GGGACACCGCCGGCCAAGAACGGTA------CAGGGCGGTGACGAGCGCGTACTACCGCG 474
consensus_1374#1 GGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTC 176
************************* ** * *** * * ** *
consensus_1374#0 GC----GCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAAC 530
consensus_1374#1 GCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAG-AAATACTGGAAAGA 235
** ** * * * * * * *** * * * * ** *
consensus_1374#0 GTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCG-ATGGCTCCACCGTGGTGG-CGC 588
consensus_1374#1 TCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGC 295
*** ** * * * ** * * ** * * ***
consensus_1374#0 TG----ATCGGGAACAAGGCCGA---CATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGAC 641
consensus_1374#1 TGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAAC 355
** **** ** * ** * ** *** * * * ** **
consensus_1374#0 GAGGCCGCGCGGT-TCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTC 700
consensus_1374#1 TGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATA 415
* * * * * ** ** ** * * * * * * * * *
consensus_1374#0 GGGCGACAACGTGGACCGCGCCT-TCCTCACGCT-GCT-CGAGG-AGAT--CTTCGCCGT 754
consensus_1374#1 CTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATG 475
* * *** * * * * * ** *** *** ***** **** ** *
consensus_1374#0 CGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGC----ACGGCGGATGCGCGACGGCGGCG 810
consensus_1374#1 CATGTCAGCCAAGACACC--AGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAG 533
* **** ** * * * **** * ** * * * * * ** *
consensus_1374#0 CCGGCGG---CGG--CGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTC-------G 858
consensus_1374#1 CTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAG 593
* * *** * *** ** * ** ** *** * *
consensus_1374#0 GCTCCAT-CATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCG 917
consensus_1374#1 GATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATG 653
* * *** ** * * * * * * * * * *** * *
consensus_1374#0 ACACACAGAGACTGGATGTTC--GCTCGTGTAATGTTTTTGTTTCGA-CATATCGATTAT 974
consensus_1374#1 CGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCAC 713
* * *** * * * *** ** * * * ** ** *** *
consensus_1374#0 T---ACACATTCACATCATTTCACCT-CGCGTTCTTGTC-----AATTATAGAGAAGGAT 1025
consensus_1374#1 CGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAA 773
* ** * *** ** * *** * ** ** ** *
consensus_1374#0 TAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT-------------- 1071
consensus_1374#1 CTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGN 833
******** * ** *** ** * * * **
consensus_1374#0 ----------------------
consensus_1374#1 TGGCGNCTAATTAANAATTTGA 855
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||