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Oryza sativa
cluster # 1374 cluster # 1374       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1374#0 length = 1071 sequences # 1  
consensus_1374#1 length = 855 sequences # 1  

consensusID : consensus_1374#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1071
fasta sequence
                              [ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCCTCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATTAGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGAGGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGGAGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGACGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTACAGGGCGGTGACGAGCGCGTACTACCGCGGCGCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACAAGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCGCCTTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGCACGGCGGATGCGCGACGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTCGACATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAGAGAAGGATTAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT]

[+] EMBL AK111543             [ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCCTCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATTAGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGAGGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGGAGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGACGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTACAGGGCGGTGACGAGCGCGTACTACCGCGGCGCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACAAGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCGCCTTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGCACGGCGGATGCGCGACGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTCGACATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAGAGAAGGATTAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT]


>consensus_1374#0 ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCC TCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATT AGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGA GGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGG AGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGA CGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCG GCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCT GGGACACCGCCGGCCAAGAACGGTACAGGGCGGTGACGAGCGCGTACTACCGCGGCGCGC TGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGT GGGTGGAGGAGCTCCGGGCGCACGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACA AGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACGAGGCCGCGCGGTTCGCGG AGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCG CCTTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCG ACGAGGCACGGCGGATGCGCGACGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGG GGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGT GCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTC GACATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAGAGA AGGATTAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT



consensusID : consensus_1374#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 855
fasta sequence
                              [GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTCGCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAGAAATACTGGAAAGATCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGCTGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAACTGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATACTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATGCATGTCAGCCAAGACACCAGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAGCTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAGGATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATGCGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCACCGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAACTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGNTGGCGNCTAATTAANAATTTGA]

[+] EMBL CA765964             [GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTCGCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAGAAATACTGGAAAGATCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGCTGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAACTGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATACTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATGCATGTCAGCCAAGACACCAGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAGCTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAGGATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATGCGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCACCGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAACTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGNTGGCGNCTAATTAANAATTTGA]


>consensus_1374#1 GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGT CGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGA CACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTCGCAA ACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAGAAATACTGGAAAGATCATT TTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGCTGCGA AATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAACTGATC TGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATACTTAC ATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATGCATGT CAGCCAAGACACCAGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAGCTAATTG GATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAGGATGCAT GTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATGCGATGCT ACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCACCGAAAGN GATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAACTGGCAT GTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGNTGGCGNC TAATTAANAATTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1374#0      ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCC 60
consensus_1374#1      ------------------------------------------------------------
                                                                                  

consensus_1374#0      TCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATT 120
consensus_1374#1      ------------------------------------------------------------
                                                                                  

consensus_1374#0      AGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGA 180
consensus_1374#1      ------------------------------------------------------------
                                                                                  

consensus_1374#0      GGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGG 240
consensus_1374#1      ------------------------------------------------------------
                                                                                  

consensus_1374#0      AGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGA 300
consensus_1374#1      ------------------------------------------------------------
                                                                                  

consensus_1374#0      CGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCG 360
consensus_1374#1      ----GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCG 56
                          ********************************************************

consensus_1374#0      GCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCT 420
consensus_1374#1      GCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCT 116
                      ************************************************************

consensus_1374#0      GGGACACCGCCGGCCAAGAACGGTA------CAGGGCGGTGACGAGCGCGTACTACCGCG 474
consensus_1374#1      GGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTC 176
                      *************************      ** *       *** *   * **  *   

consensus_1374#0      GC----GCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAAC 530
consensus_1374#1      GCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAG-AAATACTGGAAAGA 235
                      **    **    *     * *  * * *      *** *     *   *   * ** *  

consensus_1374#0      GTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCG-ATGGCTCCACCGTGGTGG-CGC 588
consensus_1374#1      TCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGC 295
                                  ***      **    *   *      *  **  * *  ** * * ***

consensus_1374#0      TG----ATCGGGAACAAGGCCGA---CATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGAC 641
consensus_1374#1      TGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAAC 355
                      **    **** ** *   ** *      **   ***     * *      *    ** **

consensus_1374#0      GAGGCCGCGCGGT-TCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTC 700
consensus_1374#1      TGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATA 415
                          * *   * * * **    **  **    *        *  *  * * * *  * * 

consensus_1374#0      GGGCGACAACGTGGACCGCGCCT-TCCTCACGCT-GCT-CGAGG-AGAT--CTTCGCCGT 754
consensus_1374#1      CTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATG 475
                           * * ***  *   * * * * **   *** *** ***** ****    ** *   

consensus_1374#0      CGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGC----ACGGCGGATGCGCGACGGCGGCG 810
consensus_1374#1      CATGTCAGCCAAGACACC--AGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAG 533
                      * ****   ** * * *   ****  *    **    *  * *  *     *    ** *

consensus_1374#0      CCGGCGG---CGG--CGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTC-------G 858
consensus_1374#1      CTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAG 593
                      *     *   ***  * ***    ** *  **  **        ***  *         *

consensus_1374#0      GCTCCAT-CATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCG 917
consensus_1374#1      GATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATG 653
                      * * ***  ** * * *   *    *  *  *   *         *   ***    *  *

consensus_1374#0      ACACACAGAGACTGGATGTTC--GCTCGTGTAATGTTTTTGTTTCGA-CATATCGATTAT 974
consensus_1374#1      CGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCAC 713
                        *  *    *** *  * *   ***     ** *  *  *    ** **   ***  * 

consensus_1374#0      T---ACACATTCACATCATTTCACCT-CGCGTTCTTGTC-----AATTATAGAGAAGGAT 1025
consensus_1374#1      CGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAA 773
                          *   ** *         ***    ** * *** *      **  **     ** * 

consensus_1374#0      TAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT-------------- 1071
consensus_1374#1      CTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGN 833
                        ********  * **     ***   **  * *    *  **                 

consensus_1374#0      ----------------------
consensus_1374#1      TGGCGNCTAATTAANAATTTGA 855
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)