cluster # 13740

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Oryza sativa
cluster # 13740 cluster # 13740 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13740#0 length = 1676 sequences # 11
consensus_13740#1 length = 353 sequences # 1

consensus_13740#2 length = 343 sequences # 1
consensus_13740#3 length = 269 sequences # 1

consensusID : consensus_13740#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1676
fasta sequence

                              [CGCGTCGCCGTATCGTATCCATCAGATATTCAGATTCACAACCCCACGCCGCCTCGCCCTCGCCCACCGCGGCGACACCTACAAAGCCCGCGACGAGGGCCAATGCCATTGGCGTGACAAGGCGGGGAGCGCGACGCGACGCGAGGGCGGAGAGAGCGAGGGAGGGGAGAGGAGGAGGAGGAGGTTGATGGCGTCGCCGGCGGTGGTGGC-GTTCGC-GGTGGC-GGTGGC-GGTGGC-GGC-GCTGGC-GGC-GTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACACCCGCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCGTCGCGTTCGACCCGCTCGGCCGGGGACCCTACACCGGCGTCGCCGACGGCCGCGTCGTGCGCTGGGACGGCGCCCGCTGGGTCTACTTCGCGCACTCCTCCCCGAACTGGACCGCCGAGCTCTGCGGCCACAAGGCGTCGCCGCTCGACTACCTCAAGGACGAGCACATCTGCGGCCGCGCGCTCGGCCTCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTTCGGCCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGCCACCCCGCTCGCCACCGAGGCCGAGGGCGTTCGCTTCAACTTCACCAACGACCTCGACCTCGACGACGACGGCAACGTCTACTTCACTGACAGCAGCATCCACTACCAGAGACGGCATTTCATGCAATTGGTTTTCTCTGGA-GATCCCTCAGGGAGGCTTCTGAAATACGACCCGAACACAAAGAAAGCAACAGTTCTCCACC-GCAACATT-CAGTTTCCGAATGGGGTGTCCA-TGAGCAAGGATGGCTTGTTCTTCGTCTTCTGCGAAGGATCCCGTGGCAGATTGAGCCGATACTGGCTGAAAGGGGAGAAGGCTGGAACCGTGGATCTTTTCGCCATCCTGCCTGGG-TTTCCAGACAATGTGAGGACCAACGACAA-GGGTGAATTCTGGGTAGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGCTCAGCCT-CCCAATCCCTGCCAAGTACCACTACCTGATGCAGATCGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAACCCCGAAGGCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATG-ACGTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTAGTTCATTTTCACAGTCCATGACTCCATGTTCGTTTGGTGCCTTCTTATTGCGCTCGATAATAATTTGTGAAATTGCCGGATTCTTTGATCCGGTGCAGTCTGTTCAAAAAAAAAAAAAA]

[+] EMBL AK099001             [CGCGTCGCCGTATCGTATCCATCAGATATTCAGATTCACAACCCCACGCCGCCTCGCCCTCGCCCACCGCGGCGACACCTACAAAGCCCGCGACGAGGGCCAATGCCATTGGCGTGACAAGGCGGGGAGCGCGACGCGACGCGAGGGCGGAGAGAGCGAGGGAGGGGAGAGGAGGAGGAGGAGGTTGATGGCGTCGCCGGCGGTGGTGGC GTTCGC GGTGGC GGTGGC GGTGGC GGC GCTGGC GGC GTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACACCCGCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCGTCGCGTTCGACCCGCTCGGCCGGGGACCCTACACCGGCGTCGCCGACGGCCGCGTCGTGCGCTGGGACGGCGCCCGCTGGGTCTACTTCGCGCACTCCTCCCCGAACTGGACCGCCGAGCTCTGCGGCCACAAGGCGTCGCCGCTCGACTACCTCAAGGACGAGCACATCTGCGGCCGCGCGCTCGGCCTCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTTCGGCCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGCCACCCCGCTCGCCACCGAGGCCGAGGGCGTTCGCTTCAACTTCACCAACGACCTCGACCTCGACGACGACGGCAACGTCTACTTCACTGACAGCAGCATCCACTACCAGAGACGGCATTTCATGCAATTGGTTTTCTCTGGA GATCCCTCAGGGAGGCTTCTGAAATACGACCCGAACACAAAGAAAGCAACAGTTCTCCACC GCAACATT CAGTTTCCGAATGGGGTGTCCA TGAGCAAGGATGGCTTGTTCTTCGTCTTCTGCGAAGGATCCCGTGGCAGATTGAGCCGATACTGGCTGAAAGGGGAGAAGGCTGGAACCGTGGATCTTTTCGCCATCCTGCCTGGG TTTCCAGACAATGTGAGGACCAACGACAA GGGTGAATTCTGGGTAGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGCTCAGCCT CCCAATCCCTGCCAAGTACCACTACCTGATGCAGATCGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAACCCCGAAGGCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATG ACGTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACA                                                                                                                             ]
[+] EMBL AK111876             [              GTATCCATCAGATATTCAGATTCACAACCCCACGCCGCCTCGCCCTCGCCCACCGCGGCGACACCTACAAAGCCCGCGACGAGGGCCAATGCCATTGGCGTGACAAGGCGGGGAGCGCGACGCGACGCGAGGGCGGAGAGAGCGAGGGAGGGGAGAGGAGGAGGAGGAGGTTGATGGCGTCGCCGGCGGTGGTGGC GTTCGC GGTGGC GGTGGC GGTGGC GGC GCTGGC GGC GTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACACCCGCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCGTCGCGTTCGACCCGCTCGGCCGGGGACCCTACACCGGCGTCGCCGACGGCCGCGTCGTGCGCTGGGACGGCGCCCGCTGGGTCTACTTCGCGCACTCCTCCCCGAACTGGACCGCCGAGCTCTGCGGCCACAAGGCGTCGCCGCTCGACTACCTCAAGGACGAGCACATCTGCGGCCGCGCGCTCGGCCTCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTTCGGCCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGCCACCCCGCTCGCCACCGAGGCCGAGGGCGTTCGCTTCAACTTCACCAACGACCTCGACCTCGACGACGACGGCAACGTCTACTTCACTGACAGCAGCATCCACTACCAGAGACGGCATTTCATGCAATTGGTTTTCTCTGGA GATCCCTCAGGGAGGCTTCTGAAATACGACCCGAACACAAAGAAAGCAACAGTTCTCCACC GCAACATT CAGTTTCCGAATGGGGTGTCCA TGAGCAAGGATGGCTTGTTCTTCGTCTTCTGCGAGGGATCCCGTGGCAGATTGAGCCGATACTGGCTGAAAGGGGAGAAGGCTGGAACCGTGGATCTTTTCGCCATCCTGCCTGGGTTTTCCAGACAATGTGAGGACCAACGACAA GGGTGAATTCTGGGTAGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGCTCAGCCT CCCAATCCCTGCCAAGTACCACTACCTGATGCAGATCGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAACCCCGAAGGCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATG ACGTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTAGTTCATTT                                                                                                               ]
[+] EMBL AU183041             [                                                                                                                                                                                                           nGGNGGCAGTTCGCAGGNGGCAGGNGGCAGGNGGCAGGCAGCTGGCAGGCAGTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGNCCCACGCGGACACCCGCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGAGGCGAGGTGCAGGGCCCCGAGAGCGTCGCGTTCGACCCGCTCGGCCGGGGACCCTACACCGGCGTCGCCGACGGCCGCGTCGTGCGCTGGGACGGCGCCCGCTGGGTCTACTTCGCGCACTCCTCCCCGAACTGGACCGCCGAGCTCTGCGGCCACAAGGCGTCGCCGCTCGACTACCTCAAGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI306467             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTCGGCCTCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTTCGGCCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGCCACCCCGCTCGCCACCGAGGCCGAGGGCGTTCGCTTCAACTTCACCAACGACCTCGACCTCGACGACGACGGCAACGTCTACTTCACTGACAGCAGCATCCACTACCAGAGACGGCATTTCATGCAATTGGTTTTCTCTGGA GATCCCTCAGGGAGGCTTCTGAAATACGACCCGAACACAAAGAAAGCAACAGTTCTCCACC GCAACATT CAGTTTCCGAATGGGGTGTCCA TGAGCAAGGATGGCTTGTTCTTCGTCTTCTGCGAAGGATCCCGTGGCAGATTGAGCCGATACTGGCTGAAAGGGGAGAAGGCTGGAACCGTGGATCTTTTCGCCATCCTGCCTGGG TTTCCAGACAATGTGAGGACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AU163234             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTTCGGCCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGNCACCCCGCTCGCCACCGANGCCGAGGGCGTTCGCTTCAACTTCACCAACGACCTCGANCTCGACGACGACGGCAACGTCTACTTCACTGACAGCAGCATCCACTANCAGANACGGCATTTCATGCAATTGGTTTTCTCTGGA GATCCCTCAGGGAGGCTTCTTAAATAAGANCCGAACACAAAGAAAGCAACAGTTCTNCACCGGCAAAATTNCAGTTTTCGAATGGGGTGTCCATTGAACAAGGATGGGTTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AU097369             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTTCGGCCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGCCACCCCGCTCGCCACCGAGGCCGAGGGCGTTCGCTTCAACTTCACCAACGACCTCGACCTCGACGACGACGGCAACGTCTACTTCACTGACAGCAGCATCCACTACCAGAGACGGNATTTCATGCAATTGGNTTTCTCTNGAGGATCNCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU164750             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTTCGCCATCCTGCCTGGG TTTCCAGACAATGTGAGGACCAACGACAA GGGTGAATTCTGGGTAGCAATCCATTGCAGGCGCA CATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGCTCAGCCT CCCAATCCCTGCCAAGTACCACTACCTGATGCAGATCGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAACCCCGAAGGCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATGNACGTTTGCACACCATTTACCACTAT                                                                                                                                                                                                                        ]
[+] EMBL C74944               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTTCGCCATCCTGCCTGGG TTTCCAGACAATGTGAGGACCAACGACAA GGGTGAATTCTGGGTAGCAATCCATTGCAGGCGCA CATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGCTCAGCCT CCCAATCCCTGCCAAGTACCACTACCTGATGCAGATCGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAACCCCGAA GCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATG ACGTTTGCACACCATTTACCACTATCCCGGGTG                                                                                                                                                                                                                ]
[-] EMBL CA763632             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aGAGGACGA  GACAAGGGGTGAATTNTGGGTAGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGNTCAGCCTCCCCAATCCCTACCAAGTACCACTACCTGATGCAGATTGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAGCCCCG AGGCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGTAAGCTCTGGATAGGATCCGTTTTGATGCCCTCCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATG ACGTTTGCACACCATTTACCACTATCCCGGATGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTAGTTCATTTTCACAGTCCATGACTCCATGTTCGTTTGGTGCCTTCTTATTGCGCTCGATAATAATTTGTGAAATTGCCGGATTCTTTGATCCGGTGCAGTCTGTTCAAAAAAAAAAAAAA]
[-] EMBL CA763631             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aGAGGACGA  GACAAGGGGTGAATTNTGGGTAGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGNTCAGCCTCCCCAATCCCTACCAAGTACCACTACCTGATGCAGATTGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAGCCCCG AGGCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGTAAGCTCTGGATAGGATCCGTTTTGATGCCCTCCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATG ACGTTTGCACACCATTTACCACTATCCCGGATGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTAGTTCATTTTCACAGTCCATGACTCCATGTTCGTTTGGTGCCTTCTTATTGCGCTCGATAATAATTTGTGAAATTGCCGGATTCTTTGATCCGGTGCAGTCTGTTCAAAAAAAAAAAAAA]
[+] EMBL CB965289             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCCATTTCAGGCGCAGCATATACGCCCGAATGGTCAGTCTCAATGTCAGTCTGAGGAAGTTCTTGCTCAGCCT CCCAATCCCTGCCAAGTACCACTACCTGATGCAGATCGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAGCCCCGAAGGCGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGTAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATG ACGTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTAGTTCATTTTCACAGTCCATGACTCCATGTTCGTTTGGTGCCTTCTTATTGCGCTCGATAATAATTTGTGAAATTGCCGGATTCTCTGATCCGGTGCAGTCT                  ]




>consensus_13740#0
CGCGTCGCCGTATCGTATCCATCAGATATTCAGATTCACAACCCCACGCCGCCTCGCCCT
CGCCCACCGCGGCGACACCTACAAAGCCCGCGACGAGGGCCAATGCCATTGGCGTGACAA
GGCGGGGAGCGCGACGCGACGCGAGGGCGGAGAGAGCGAGGGAGGGGAGAGGAGGAGGAG
GAGGTTGATGGCGTCGCCGGCGGTGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCT
GGCGGCGTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTT
CGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACACCCG
CGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCGT
CGCGTTCGACCCGCTCGGCCGGGGACCCTACACCGGCGTCGCCGACGGCCGCGTCGTGCG
CTGGGACGGCGCCCGCTGGGTCTACTTCGCGCACTCCTCCCCGAACTGGACCGCCGAGCT
CTGCGGCCACAAGGCGTCGCCGCTCGACTACCTCAAGGACGAGCACATCTGCGGCCGCGC
GCTCGGCCTCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTTCGG
CCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGCCACCCCGCTCGCCACCGAGGCCGAGGG
CGTTCGCTTCAACTTCACCAACGACCTCGACCTCGACGACGACGGCAACGTCTACTTCAC
TGACAGCAGCATCCACTACCAGAGACGGCATTTCATGCAATTGGTTTTCTCTGGAGATCC
CTCAGGGAGGCTTCTGAAATACGACCCGAACACAAAGAAAGCAACAGTTCTCCACCGCAA
CATTCAGTTTCCGAATGGGGTGTCCATGAGCAAGGATGGCTTGTTCTTCGTCTTCTGCGA
AGGATCCCGTGGCAGATTGAGCCGATACTGGCTGAAAGGGGAGAAGGCTGGAACCGTGGA
TCTTTTCGCCATCCTGCCTGGGTTTCCAGACAATGTGAGGACCAACGACAAGGGTGAATT
CTGGGTAGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGTCAG
GCTGAGGAAGTTCTTGCTCAGCCTCCCAATCCCTGCCAAGTACCACTACCTGATGCAGAT
CGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAACCCCGAAGGCGAGGTGCTTGACAT
CTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGG
GAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGC
ATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATGACGTT
TGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAACAAC
CTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTAGTT
CATTTTCACAGTCCATGACTCCATGTTCGTTTGGTGCCTTCTTATTGCGCTCGATAATAA
TTTGTGAAATTGCCGGATTCTTTGATCCGGTGCAGTCTGTTCAAAAAAAAAAAAAA

consensusID : consensus_13740#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCTGGCGGCGTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACANCCGCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCGTCGCNTTCGACCCGNTCGGCCGGGGACCCTACAACGGCGTCGCGACGGCCGCGTCGTTCGTTNGGACGGCGCCCGTTGGTCTAATTTGGGGAATTCTTCCCGAANTTGACCGCCGAGTTTTTNGGGCAAAAAGGGTT]

[+] EMBL C74607               [TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCTGGCGGCGTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACANCCGCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCGTCGCNTTCGACCCGNTCGGCCGGGGACCCTACAACGGCGTCGCGACGGCCGCGTCGTTCGTTNGGACGGCGCCCGTTGGTCTAATTTGGGGAATTCTTCCCGAANTTGACCGCCGAGTTTTTNGGGCAAAAAGGGTT]




>consensus_13740#1
TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCTGGCGGCGTTCTGCGGGACGGACC
CGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCC
CCGACGCGTCGGAGATGCCGCCCCACGCGGACANCCGCGAGCGCCTCCGCGGCGCGGAGA
TCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCGTCGCNTTCGACCCGNTCGGCCGGG
GACCCTACAACGGCGTCGCGACGGCCGCGTCGTTCGTTNGGACGGCGCCCGTTGGTCTAA
TTTGGGGAATTCTTCCCGAANTTGACCGCCGAGTTTTTNGGGCAAAAAGGGTT

consensusID : consensus_13740#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [TGGTNAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTNTGGATAGGATCCGTTNTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTNTGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATGACGTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTNCATTTTTAGTTCATTTTNACNGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031168             [TGGTNAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTNTGGATAGGATCCGTTNTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTNTGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATGACGTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTNCATTTTTAGTTCATTTTNACNGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13740#2
TGGTNAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGGAAGCTNTGGATAGGATCCGTTN
TGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTNTGCCTGG
ATACAAGGGTTAAAATGTGGAATCCCAGAATGACGTTTGCACACCATTTACCACTATCCC
GGGTGACATTTCATAAATGCCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTT
TTTTCGAAGCAGATGTAGCTTGCTTNCATTTTTAGTTCATTTTNACNGTCCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13740#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCTGGCGGCGTTCTGCGGGACGGACCCGCTGNGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGNANATGCCGCCCCACGCGGACACCCGCAAGCNCCTCCNCGGCGGGAGAATCCGGTTCCNCGGCGAGGTGCAGGGCCCCGAAAGCTTCGCTNTCAACCCGCTCGGCCGGGGACCCTACACCGGNTTCGCTACGNCCGCT]

[+] EMBL C73242               [TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCTGGCGGCGTTCTGCGGGACGGACCCGCTGNGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCCCCGACGCGTCGNANATGCCGCCCCACGCGGACACCCGCAAGCNCCTCCNCGGCGGGAGAATCCGGTTCCNCGGCGAGGTGCAGGGCCCCGAAAGCTTCGCTNTCAACCCGCTCGGCCGGGGACCCTACACCGGNTTCGCTACGNCCGCT]




>consensus_13740#3
TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCTGGCGGCGTTCTGCGGGACGGACC
CGCTGNGGACGGGGAGCATGGTGGACTTCCCGGGCTTCGTCCCCCACGTCGTCGAGCTCC
CCGACGCGTCGNANATGCCGCCCCACGCGGACACCCGCAAGCNCCTCCNCGGCGGGAGAA
TCCGGTTCCNCGGCGAGGTGCAGGGCCCCGAAAGCTTCGCTNTCAACCCGCTCGGCCGGG
GACCCTACACCGGNTTCGCTACGNCCGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CGCGTCGCCGTATCGTATCCATCAGATATTCAGATTCACAACCCCACGCCGCCTCGCCCT 60
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CGCCCACCGCGGCGACACCTACAAAGCCCGCGACGAGGGCCAATGCCATTGGCGTGACAA 120
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GGCGGGGAGCGCGACGCGACGCGAGGGCGGAGAGAGCGAGGGAGGGGAGAGGAGGAGGAG 180
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      -----------------------TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCT 37
consensus_13740#3      -----------------------TGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCT 37
consensus_13740#0      GAGGTTGATGGCGTCGCCGGCGGTGGTGGCGTTCGCGGTGGCGGTGGCGGTGGCGGCGCT 240
consensus_13740#2      ----------------------------TGGTNAGAGCCGTTAGTGAAGTTGAGGAGAAG 32
                                                     **  * *  *   ***  * **  *     

consensus_13740#1      GGCGGCGTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTT 97
consensus_13740#3      GGCGGCGTTCTGCGGGACGGACCCGCTGNGGACGGGGAGCATGGTGGACTTCCCGGGCTT 97
consensus_13740#0      GGCGGCGTTCTGCGGGACGGACCCGCTGCGGACGGGGAGCATGGTGGACTTCCCGGGCTT 300
consensus_13740#2      GATGGGAAGCTNTGGATAGGATCCGTTNTG-ATGCCCTTCATTGCCGTCTTC---GATTA 88
                       *  **    **  **   *** *** *  * * *     *** *  * ****   *  * 

consensus_13740#1      CGTCCCC-CACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACANCC 156
consensus_13740#3      CGTCCCC-CACGTCGTCGAGCTCCCCGACGCGTCGNANATGCCGCCCCACGCGGACACCC 156
consensus_13740#0      CGTCCCC-CACGTCGTCGAGCTCCCCGACGCGTCGGAGATGCCGCCCCACGCGGACACCC 359
consensus_13740#2      CGCCAATGCATCTTAGCAAACTTTNTGCCTGGATACAAGGGTTAA--AATGTGGAATCCC 146
                       ** *    **  *   * * **    * *  *    *   *       * * ***   **

consensus_13740#1      GCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCG 216
consensus_13740#3      GCAAGCNCCTCCNCGGCGGGAGAATCCGGTTCCNCGGCGAGGTGCAGGGCCCCGAAAGCT 216
consensus_13740#0      GCGAGCGCCTCCGCGGCGCGGAGATCCGGTTCCGCGGCGAGGTGCAGGGCCCCGAGAGCG 419
consensus_13740#2      AGAATGACGTTTGCA-CACCATTTACCACTATCCCGG------GTGACATTTCATAAATG 199
                          *   * *   *  *        **  *  * ***      *        *   *   

consensus_13740#1      TCGCNTTCGACC--CGNTCGGCCGGGGACCCTACAACGGCGTCGC-GACGGCCGCGTCGT 273
consensus_13740#3      TCGCTNTCAACC--CGCTCGGCCGGGGACCCTACACCGGNTTCGC-TACGNCCGCT---- 269
consensus_13740#0      TCGCGTTCGACC--CGCTCGGCCGGGGACCCTACACCGGCGTCGCCGACGGCCGCGTCGT 477
consensus_13740#2      CCGCTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGC 259
                        ***  ** *    *   *      *   * *    * *  *     * *          

consensus_13740#1      TCGTTNGGACGGCGCCCGTTGG-TCTAATTTGGGGAATTCTTCCCGAANTTGACCGCCGA 332
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GCGCTGGGACGGCGCCCGCTGGGTCTACTTCGCGCACTCCTCCCCGAACTGGACCGCCGA 537
consensus_13740#2      TTGCTTNCATTTTTAGTTCATTTTNACNGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 319
                                                                                   

consensus_13740#1      GTTTTTNGGGCAAAAAGGGTT--------------------------------------- 353
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GCTCTGCGGCCACAAGGCGTCGCCGCTCGACTACCTCAAGGACGAGCACATCTGCGGCCG 597
consensus_13740#2      AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 343
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CGCGCTCGGCCTCCGATTCGACCGGAGGACGGGGGACCTCTACATCGCCGACGCCTACTT 657
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CGGCCTCCTCAAGGTCGGCCCCGACGGCGGCCTCGCCACCCCGCTCGCCACCGAGGCCGA 717
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GGGCGTTCGCTTCAACTTCACCAACGACCTCGACCTCGACGACGACGGCAACGTCTACTT 777
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CACTGACAGCAGCATCCACTACCAGAGACGGCATTTCATGCAATTGGTTTTCTCTGGAGA 837
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      TCCCTCAGGGAGGCTTCTGAAATACGACCCGAACACAAAGAAAGCAACAGTTCTCCACCG 897
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CAACATTCAGTTTCCGAATGGGGTGTCCATGAGCAAGGATGGCTTGTTCTTCGTCTTCTG 957
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CGAAGGATCCCGTGGCAGATTGAGCCGATACTGGCTGAAAGGGGAGAAGGCTGGAACCGT 1017
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GGATCTTTTCGCCATCCTGCCTGGGTTTCCAGACAATGTGAGGACCAACGACAAGGGTGA 1077
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      ATTCTGGGTAGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGT 1137
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CAGGCTGAGGAAGTTCTTGCTCAGCCTCCCAATCCCTGCCAAGTACCACTACCTGATGCA 1197
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GATCGGCGGCAAGCTCCACGCTCTGATCATCAAGTACAACCCCGAAGGCGAGGTGCTTGA 1257
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      CATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGA 1317
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      TGGGAAGCTCTGGATAGGATCCGTTCTGATGCCCTTCATTGCCGTCTTCGATTACGCCAA 1377
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      TGCATCTTAGCAAACTTTATGCCTGGATACAAGGGTTAAAATGTGGAATCCCAGAATGAC 1437
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCGCTTTCAAGTAAC 1497
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      AACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTA 1557
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      ------------------------------------------------------------
consensus_13740#3      ------------------------------------------------------------
consensus_13740#0      GTTCATTTTCACAGTCCATGACTCCATGTTCGTTTGGTGCCTTCTTATTGCGCTCGATAA 1617
consensus_13740#2      ------------------------------------------------------------
                                                                                   

consensus_13740#1      -----------------------------------------------------------
consensus_13740#3      -----------------------------------------------------------
consensus_13740#0      TAATTTGTGAAATTGCCGGATTCTTTGATCCGGTGCAGTCTGTTCAAAAAAAAAAAAAA 1676
consensus_13740#2      -----------------------------------------------------------