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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1275 fasta sequence
[TGCGTCAGTCACTCCCCGCGAGCTAAGCTCTCCTCCCCATCACTCCGATGGCGCTGTCCGCGGCGGCGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCTCATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAGACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT-GTTGAT-AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG-CTGAAGGAGCTTT-GGAATATGGGATTATT-GACCGTATTATTAGGCCTTCTCGCATCAAGAAAG-AGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCT-GTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTCTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACA-TTTTGTGATATCAGGCGAGAATGTTCTTGTTAAATAATGTGTTCGTTGCCTGAAAATCTTCAAAAGGGTTGCTGTGGTCTGCAA]
[+] EMBL CF335437 [TGCGTCAGTCACTCCCCGCGAGCTAAGCTCTCCTCCCCATCACTCCGATGGCGCTGTCCGCGGCGGCGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCTCATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCANACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGGGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATG ]
[+] EMBL AK099815 [ ACTCCCCGCGAGCTAAGCTCTCCTCCCCATCACTCCGATGGCGCTGTCCGCGGCGGCGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCTCATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAGACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG CTGAAGGAGCTTT GGAATATGGGATTATT GACCGTATTATTAGGCCTTCTCGCATCAAGAAAG AGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCT GTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTCTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACA TTTTGTGATATCAGGCGAGAATGTTCTTGTTAAATAATGTGTT ]
[+] EMBL AK061385 [ TCTCCTCCCCATCACTCCGATGGCGCTGTCCGCGGCGGCGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCTCATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAGACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG CTGAAGGAGCTTT GGAATATGGGATTATT GACCGTATTATTAGGCCTTCTCGCATCAAGAAAG AGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCT GTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGC ]
[+] EMBL AK104375 [ TCTCCTCCCCATCACTCCGATGGCGCTGTCCGCGGCGGCGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCTCATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAGACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG CTGAAGGAGCTTT GGAATATGGGATTATT GACCGTATTATTAGGCCTTCTCGCATCAAGAAAG AGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCT GTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGC ]
[+] EMBL CB642186 [ CGCCGCCTAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCTCATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAGACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCCATG CTGAAAGAGCTTT GGAATATGGG ]
[+] EMBL CB096422 [ TCGGGTTGAAGGCCCAGACCGAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG CTGAANGAGCTTTGGGAATATGGGATTATTGGACCGTATTATTANGCCTTCTCGCATCAAGAAAGAAGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGGATCAGNTATACGGGNTAGATTGNAT ]
[+] EMBL CB678782 [ AAGGCCCACACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG CTGAAGGAGCTTT GGAATATGGGATTATT GACCGTATTATTAGGCCTTCTCGCATCAAGAAAG AGGG ]
[-] EMBL CB642187 [ AGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG CTGAAGGAGCTTT GGAATATGGGATTATT GACCGTATTATTAGGCCTTCTCGCATCAAGAAAG AGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCT GTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTCTGGTGATCTCATTTTGTCAAACATATCGAGAGACGGGTCATACA TTTTGTGATATCAGGCGAGAATGTTCTTGTTAAATAATGTGTTCGTTGCCTGAAAATCTTCAAAAGGGTTGCTGTGGTCTGCAA]
[+] EMBL CA767473 [ CGTACGGGTATGCCTCTTTGCCGGATTT ACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCT GTTGAT AAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATG CTGAAGGAGCTTT GGAATATGGGATTATT GACCGTATTATTAGGCCTTCTCGCATCAAGAAAG AGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCT GTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCACTCTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACATTTTTGTGATATCAGGCGAGAAT ]
[+] EMBL BI807010 [ cCACCCA GTCATCCTGGTTGATAAAGATTCATGAAGATCTATCTA GGTGAANCGCTTCGATGCCTGAAGGAGCTTT GGAATATGGGATTATT GCCCGTATTATTA GCCTTCTCGCATCAAGAAAG AGGGATCCCCTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTCCTCGTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTA CAGTCATAAGAGAAATACGGTACTCTAGTT CCATTCTGGTGATCTCATTTTG C AACATATCGAGAGACGCGTCATAC TTTTGTGATATCAGGCGAGAATGNCCNNGTTAAAAAAaaaa ]
consensusID : consensus_13745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 817 fasta sequence
[CGAGCGCBNNNNDNDTTATCTTCATTGGGGACAGTATAGATGVAGAGTTTAGTAACCAAGTATTGGCAAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCTGTTGATAAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTTTGGAATATGGGATTATTGACCGTATTATTAGGCCTTCTCGCATCAAGAAAGAGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTCTGGTGATCTCATTTTGTCAACCAAAAAAAAAAAAAAAAA]
[+] EMBL AA754422 [CGAGCGCBNNNNDNDTTATCTTCATTGGGGACAGTATAGATGVAGAGTTTAGTAACCAAGTATTGGCAAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTC ]
[-] EMBL CA759645 [ GAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCTGTTGATAAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTTTGGAATATGGGATTATTGACCGTATTATTAGGCCTTCTCGCATCAAGAAAGAGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTCTGGTGATCTCATTTTGTCAACCAAAAAAAAAAAAAAAA ]
[-] EMBL CF335438 [ GAATATGGGATTATTGACCGTATTATTAGGCCTTTTCGCATCAAGAAAAAGGGATCCACTGCTCAAAAGAAGGATTTACGTAATTTGGGACTTGGGTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTTTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAAATTTGTTTTGCTGTCTCCATTGGTATTGGACTTAAAAAAGAGAATAATGTTGTAGCAGTCATAAAAGAAATACGGTACTTTAGTTGCCATTTTGGTGA A AAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13745#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[CAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCTGTTGATAAGATTCATGAAGATCTATTTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTTTGGAATATGGGATTATTGACCGTATTATTAGGCCTTTTCGCATCAAGAAAGAGGGATCCCCTGCTCAAAAGAAGGATTTACGTAATTTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTTTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACATTTTGTGATATCAGGCGAGAATGTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF331177 [CAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCTGTTGATAAGATTCATGAAGATCTATTTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTTTGGAATATGGGATTATTGACCGTATTATTAGGCCTTTTCGCATCAAGAAAGAGGGATCCCCTGCTCAAAAGAAGGATTTACGTAATTTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTATTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATTTTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACATTTTGTGATATCAGGCGAGAATGTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13745#0 TGCGTCAGTCACTCCCCGCGAGCTAAGCTCTCCTCCCCATCACTCCGATGGCGCTGTCCG 60
consensus_13745#1 ------------------------------------------------------------
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 CGGCGGCGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCT 120
consensus_13745#1 ------------------------------------------------------------
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 CATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAGACCAAGCTAGGCT 180
consensus_13745#1 ------------------------------------------------------------
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 CGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGA 240
consensus_13745#1 ------------------------------------------------------------
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 TCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTG 300
consensus_13745#1 ------------------------------------------------------------
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 GTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATAT 360
consensus_13745#1 ------------------------------------------------------------
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 GGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTA 420
consensus_13745#1 ---------CGAGCGCBNNNNDNDTTATCTTCATTGGGGACAGTATAGATGVAGAGTTTA 51
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 GTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTC 480
consensus_13745#1 GTAACCAAGTATTGGCAAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTC 111
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 TTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAA 540
consensus_13745#1 TTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAA 171
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 TGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAG 600
consensus_13745#1 TGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAG 231
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 GATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTT 660
consensus_13745#1 GATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTT 291
consensus_13745#2 ------------------------------------------------------------
consensus_13745#0 CACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAA 720
consensus_13745#1 CACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAA 351
consensus_13745#2 ---------------------------------------------------------CAA 3
***
consensus_13745#0 ATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATC 780
consensus_13745#1 ATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATC 411
consensus_13745#2 ATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATC 63
************************************************************
consensus_13745#0 CTGTTGATAAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTT 840
consensus_13745#1 CTGTTGATAAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTT 471
consensus_13745#2 CTGTTGATAAGATTCATGAAGATCTATTTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTT 123
*************************** ********************************
consensus_13745#0 TGGAATATGGGATTATTGACCGTATTATTAGGCCTTCTCGCATCAAGAAAGAGGGATCCA 900
consensus_13745#1 TGGAATATGGGATTATTGACCGTATTATTAGGCCTTCTCGCATCAAGAAAGAGGGATCCA 531
consensus_13745#2 TGGAATATGGGATTATTGACCGTATTATTAGGCCTTTTCGCATCAAGAAAGAGGGATCCC 183
************************************ **********************
consensus_13745#0 CTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGT 960
consensus_13745#1 CTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGT 591
consensus_13745#2 CTGCTCAAAAGAAGGATTTACGTAATTTGGGACTTGGCTAGTAGATGCTATTGTATCAGT 243
***************** ******** *********************************
consensus_13745#0 TATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTT 1020
consensus_13745#1 TATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTT 651
consensus_13745#2 TATACGTGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTT 303
************************************************************
consensus_13745#0 TATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTA 1080
consensus_13745#1 TATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTA 711
consensus_13745#2 TATTTCATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTA 363
************************************************************
consensus_13745#0 TTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTT 1140
consensus_13745#1 TTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTT 771
consensus_13745#2 TTGGACTTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTT 423
************************************************************
consensus_13745#0 GCCATTCTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACATTTTGTGAT 1200
consensus_13745#1 GCCATTCTGGTGATCTCATTTTGTCAACCAAAAAAAAAAAAAAAAA-------------- 817
consensus_13745#2 GCCATTTTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACATTTTGTGAT 483
****** ******************** ** * * * *
consensus_13745#0 ATCAGGCGAGAATGTTCTTGTTAAATAATGTGTTCGTTGCCTGAAAATCTTCAAAAGGGT 1260
consensus_13745#1 ------------------------------------------------------------
consensus_13745#2 ATCAGGCGAGAATGTTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 534
consensus_13745#0 TGCTGTGGTCTGCAA 1275
consensus_13745#1 ---------------
consensus_13745#2 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||