These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1972 fasta sequence [CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA-GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG-CCGTGTGGCACCTG-TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATT-GGGAACCTGCAGCCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGC-TTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGA-ACCAGGAATGGAAGATCA-TTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAAAAAAAAAA] [+] EMBL AK121301 [CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATT GGGAACCTGCAGCCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGC TTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGA ACCAGGAATGGAAGATCA TTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAA ] [+] EMBL CB625665 [CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTACGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGAGGAAGGCGTCTTCTGTGGAGGATGAATCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGCATTCGGGGAGGGACAATTGCTGCCAACGAC ] [+] EMBL CB634295 [CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTANGGCGTATGGAAAGTGTTCAGGAG ] [+] EMBL CB632298 [ GGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCGTGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGTGGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTCAGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCAT ] [+] EMBL CB678568 [ GGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGCGGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATT ] [+] EMBL C72575 [ TGCGGGAGTCCGTGGTTTACTATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGAATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCANTTTCANTTTGCACANCCTTCAGCTTCAGAGCTGGGAGAAGACAGTGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACANTTCCACTCGATGGAGATGAAGATGCAACTGAGGGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCANTAGGCCCGTGTTGCACCTGTTTGATTCA ] [+] EMBL CA767038 [ GGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGGGAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGAAGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAACAATTCCACTCGATGGAGATGAAGATGCAACTGA GGAGGTCCTGGATCCTGATTTTGGGGAGGCAGCAATAGG CCGTGTGGCACCTG TTGATTCAGGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTNCTATGATGCTGGGAACAAGNTCAACGTATATCCTGATCAGGNTTCTNCGNGGCTTGGTGAGNGGATACCTNCTAAAGGAGG TACTTTATTGGGGAACCTGCAGCCAGCTTACATGGACTTCCGGTTNTTTTNTNTGGGGAANTTATGGGCCATAGTAAGCAGCTTTGGC ACAACTCA ] [+] EMBL AU094014 [ CATTGAAGATATGCTATCCTGCTCTAGAGANCCCAGGAATGGAAGATCATTTACTGGAAGTGNCCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAAAAAAAAAA] [-] EMBL CB678569 [ ATTGGGAAACAGTCTCTTCTTTACCAAAGGAGGTATATTGTTGGGTACCTTGTGGCCAAGCAACTGGTGGACAAACGTTATGCTGCTAGAATTCTTTGGAATGAAGAGGATTCAGAAATTATTAATGCTTTGAGCACAATCAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATGGTATGAGTTGTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCTTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCGCTTGCCTGGGCATTTCTCAATAGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTC ] [+] EMBL BI811487 [ CTTTACC AACCTGTTCTATTGCTGGGTACCTTGTGGCCAA CAACTGCTGGACGAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACAAACCGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGC AAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATC ATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAA ] consensusID : consensus_13746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1196 fasta sequence [TTGTGATAAAGCAAACTCACGTAAATATTGTTTTATGTAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAACCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCATACTATTGACCTAAAAAAAAGG] [+] EMBL AK100373 [TTGTGATAAAGCAAACTCACGTAAATATTGTTTTATGTAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAGATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATATTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAGAAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGTGGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAACCAGCTCACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGC ] [-] EMBL CB634296 [ GGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATNTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCATACTATTGACCTAAAAAAAAGG] [-] EMBL CB632299 [ GGTCCATAGTAAGCAGCTTGGCAACAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGGCAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTACTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTAGGGGCCAAGCAGTATGATCCCATACTATTGACCTA ] consensusID : consensus_13746#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAGCAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACGGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCAAAAAAAAAAAAA] [-] EMBL CA759633 [CCAGGAATGGAAGATCATTACTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAGCAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGAAAACGGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGAGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCACTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCCCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 CGTTGCACAGCTCCAGGGCGCTCCAAGGTCCGGTCAGGTTTCCGGGGCTGCGGGCCGCCG 60 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 TGGAGTGCCAGTGCCAGCGCATCGATGACCTTGCGAGGGTCACGGAAGGGAACGGGGCGT 120 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 GGGTTAAGGATGCGGTGGACAAGGCAAGCCATGCTCTCGGTGATGTGAGGGTGCCTGGTC 180 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 AGGCTGTAGGTGGCAATGGGAGCGTAAACGGGAGCGCCGCCAAGCCTCCGCCCCAGCGGC 240 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 GGAAGGCGTCTTCTGTGGAGGATGAAGCTTGGGAGCTCTTGCGGGAGTCCGTGGTTTACT 300 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 ATTGTGGTAGTCCGGTCGGGACGATTGCTGCCAACGACCCGAATGATGCCAATCCGATGA 360 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 ATTATGATCAGGTGTTTATTCGGGATTTCATACCATCTGGCATCGCGTTTCTATTGAAGG 420 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 GAGAGTACGAAATTGTGCGCAATTTCATTTTGCACACCCTTCAGCTTCAGAGCTGGGAGA 480 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 AGACAATGGACTGCCATAGTCCAGGACAGGGCTTAATGCCTGCTAGCTTCAAGGTGCGAA 540 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 CAATTCCACTCGATGGAGATGAAGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGG 600 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 AGGCAGCAATAGGCCGTGTGGCACCTGTTGATTCAGGTCTATGGTGGATCATATTACTTA 660 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 GGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTG 720 consensus_13746#1 ------------------------------------------------------------ consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 GAATTAAAATGATATTAAAGCTTTGTTTAGCTGATGGGTTTGACATGTTCCCTACATTAC 780 consensus_13746#1 -------------------------TTGTGATAAAGCAAACTCACGTAAATATTGTTTT- 34 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 TGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTG 840 consensus_13746#1 --ATGTAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAG 92 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 AAATTCAGGCACTGTTCTATTCAGCTCTCCTGTGCGCGCGTGAAATGTTAACCCCAGAAG 900 consensus_13746#1 ATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATA 152 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 ATGGATCAGCTGATTTAATACGTGCTCTAAACAATAGGCTTATCGCACTGTCCTTTCATA 960 consensus_13746#1 TTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAG 212 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 TTAGAGAGTACTATTGGGTTGACATGCAGAAGCTGAATGAGATTTATCGATATAAAACAG 1020 consensus_13746#1 AAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGT 272 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 AAGAATATTCCTATGATGCTGTGAACAAGTTCAACATATATCCTGATCAGGTTTCTCCGT 1080 consensus_13746#1 GGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAACCAGCTC 332 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 GGCTTGTTGAGTGGATACCTCCTAAAGGAGGTTACTTCATTGGGAACCTGCAGCCAGCTC 1140 consensus_13746#1 ACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAA 392 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 ACATGGACTTCCGGTTCTTTTCTCTGGGGAATTTATGGTCCATAGTAAGCAGCTTGGCAA 1200 consensus_13746#1 CAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGG 452 consensus_13746#2 ------------------------------------------------------------ consensus_13746#0 CAACTCATCAATCCCATGCCATTTTGGATCTGATTGAATCCAAATGGTCTGATTTAGTGG 1260 consensus_13746#1 CAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTA 512 consensus_13746#2 ----------------------------------------CCAGGAATGGAAGATCATTA 20 consensus_13746#0 CAGAGATGCCATTGAAGATATGCTATCCTGCTCTAGAGAACCAGGAATGGAAGATCATTA 1320 ******************** consensus_13746#1 CTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACAT 572 consensus_13746#2 CTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACAT 80 consensus_13746#0 CTGGAAGTGACCCAAAGAATACGCCTTGGTCATATCATAATGGAGGATCCTGGCCAACAT 1380 ************************************************************ consensus_13746#1 TGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAG 632 consensus_13746#2 TGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAGCAGACCAGAGATTGCTGCAAAAG 140 consensus_13746#0 TGTTATGGCAGCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAG 1440 ************************************ *********************** consensus_13746#1 CTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCA 692 consensus_13746#2 CTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCA 200 consensus_13746#0 CTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACTATGACACCA 1500 ************************************************************ consensus_13746#1 AACGAGCACGCTTCATTGGAAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGT 752 consensus_13746#2 AACGAGCACGCTTCATTGGAAAACGGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGT 260 consensus_13746#0 AACGAGCACGCTTCATTGGGAAACAGTCTCGTCTTTACCAAACCTGGTCTATTGCTGGGT 1560 ******************* **** *********************************** consensus_13746#1 ACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACG 812 consensus_13746#2 ACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACG 320 consensus_13746#0 ACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACG 1620 ************************************************************ consensus_13746#1 AGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAA 872 consensus_13746#2 AGGATGCAGAAATTCTTAATGCTTTGAGCACGAACAGGAAAAGAGGCAAGAAAGTGTTAA 380 consensus_13746#0 AGGATTCAGAAATTCTTAATGCTTTGAGCACAAACAGGAAAAGAGGCAAGAAAGTGTTAA 1680 ***** ************************* **************************** consensus_13746#1 AGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTT 932 consensus_13746#2 AGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTT 440 consensus_13746#0 AGAAGACATTCATTGTATGAGTTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTT 1740 ************************************************************ consensus_13746#1 AGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACG 992 consensus_13746#2 AGCATTTAAGTTATAGGAAATGTCTTCCTGTATATATACACGAAAGGATATGTTTGGACG 500 consensus_13746#0 AGCATTTAAGTTATAGGAAATATCTTCCTGTATATATACACGAAAGGATATGTTTGGACG 1800 ********************* ************************************** consensus_13746#1 GAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCA 1052 consensus_13746#2 GAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCA 560 consensus_13746#0 GAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCA 1860 ************************************************************ consensus_13746#1 CTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCT 1112 consensus_13746#2 CTTGCCTGGGCATTTCTCAACTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCT 620 consensus_13746#0 CTTGCCTGGGCATTTCTCAATTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCT 1920 ******************** *************************************** consensus_13746#1 CTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCC 1172 consensus_13746#2 CTTGTAGTTTACCATATACTCCATTTGACATGACAAATTCTGTGCCAAGCAGTATGATCC 680 consensus_13746#0 CTTGTAGTTTACCATATACTCCATTTGACATGACAAAAAAAAAAAAAAAAAA-------- 1972 ************************************* ** * consensus_13746#1 CATACTATTGACCTAAAAAAAAGG 1196 consensus_13746#2 CAAAAAA-------AAAAAAA--- 694 consensus_13746#0 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||