Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1376 cluster # 1376       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1376#0 length = 1189 sequences # 2  

consensusID : consensus_1376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1189
fasta sequence
                              [GCTCACTTTACTCCCGCTCCGACCAAGCCAACCAACGCGACGTCGCAGCCAGAGCGCGAAGGAATCCGCACCGGGCGCGCGGCGCGCCACCGCTTTGATCACTCTCGTCGCGCGCGGGGCGGCCATGTCAGGCGGCGTAGGGCCGACGTGCGGGGGCGGCATCACGCTGCCGTCGACGGGCGCGCCGCTCCCCCCGCTGCACCCGACGCCGACGTCGCCGACGGCGCGGCCTCACCACCACTACTACCTCTTCTCCATCAAGCAGCTCAACTCGTTCGGCGCCGCGGCCGTGCTCGCCTTCTCCACCACCGTGCCACTCTCCGACATCGCCTTCGCCCTCCTCGTCATCCCTTACCTCGTCGTCCTCTCCGTCCTCGCCTTCCCGCAGAGGCCCGGCAAGCCCAACCCGGGCGCGCCGGTCTTCCTCGGCCGCGGCCGCTTCCTCCTCAGGGCCCACGACGCGCTCGGCTTCCTCGTCGGCGCCGCGCTCCCGGCGCTCTACAT-CCTCG-ACGGCCTCCGCTCGGGCGACACGGCGGGCGTCGCCGCGGCGTCCCCGCACGCGTTCCTCCTCGCCGCGCAGATCTTTACCGAGGGCCTCGCCGCGGCGTGGCCCGGGAGGTTCTCCCTCCCCGTGCGTGCCGCCGTGGTGGTGATGTACGGCGCGCGGAGGATGTTCGCGGCGTCGGAGTGGCTCCGCCAGGAGATGGAGAAGCGGGACCAGTTCGGCGGCGGCGTCGGCGGCGCGCCCGCCGTGGCGCGCCGCAGGGTGGTGGCGGGGAGGGTGCTGGCGGTGGCGAACCTCGCCTACTGGGGGATCAACCTCTTCGCCTTCCTGCTGCCGTTCTACCTGCCCAAGGCGTTCAACAGGTACTACTGCGGCAGCGACAGCAAGGAGGACGACGCCACCGCCGCCGCCGGCGCCATTGACGCCGACGACGCCAAGAAGAAGGATTCCTAGAGTGTGTTTGATCGTTCGTCGCTGCTTTCTCACTCGCGTTTGTGCAGCTTGGTGTATTAGCTCTTCTTCTTAATTTTTTTTTTCTTTTGAAAAATTCACGCATGTATTAGCTCTTTTTTTTCTCGAAAATTTCACGCATGTATTAGCTCAACTTGCGTTTCGTTTGGTGAAGACCAACTTTTTGAGTTTCCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK107224             [GCTCACTTTACTCCCGCTCCGACCAAGCCAACCAACGCGACGTCGCAGCCAGAGCGCGAAGGAATCCGCACCGGGCGCGCGGCGCGCCACCGCTTTGATCACTCTCGTCGCGCGCGGGGCGGCCATGTCAGGCGGCGTAGGGCCGACGTGCGGGGGCGGCATCACGCTGCCGTCGACGGGCGCGCCGCTCCCCCCGCTGCACCCGACGCCGACGTCGCCGACGGCGCGGCCTCACCACCACTACTACCTCTTCTCCATCAAGCAGCTCAACTCGTTCGGCGCCGCGGCCGTGCTCGCCTTCTCCACCACCGTGCCACTCTCCGACATCGCCTTCGCCCTCCTCGTCATCCCTTACCTCGTCGTCCTCTCCGTCCTCGCCTTCCCGCAGAGGCCCGGCAAGCCCAACCCGGGCGCGCCGGTCTTCCTCGGCCGCGGCCGCTTCCTCCTCAGGGCCCACGACGCGCTCGGCTTCCTCGTCGGCGCCGCGCTCCCGGCGCTCTACAT CCTCG ACGGCCTCCGCTCGGGCGACACGGCGGGCGTCGCCGCGGCGTCCCCGCACGCGTTCCTCCTCGCCGCGCAGATCTTTACCGAGGGCCTCGCCGCGGCGTGGCCCGGGAGGTTCTCCCTCCCCGTGCGTGCCGCCGTGGTGGTGATGTACGGCGCGCGGAGGATGTTCGCGGCGTCGGAGTGGCTCCGCCAGGAGATGGAGAAGCGGGACCAGTTCGGCGGCGGCGTCGGCGGCGCGCCCGCCGTGGCGCGCCGCAGGGTGGTGGCGGGGAGGGTGCTGGCGGTGGCGAACCTCGCCTACTGGGGGATCAACCTCTTCGCCTTCCTGCTGCCGTTCTACCTGCCCAAGGCGTTCAACAGGTACTACTGCGGCAGCGACAGCAAGGAGGACGACGCCACCGCCGCCGCCGGCGCCATTGACGCCGACGACGCCAAGAAGAAGGATTCCTAGAGTGTGTTTGATCGTTCGTCGCTGCTTTCTCACTCGCGTTTGTGCAGCTTGGTGTATTAGCTCTTCTTCTTAATTTTTTTTTTCTTTTGAAAAATTCACGCATGTATTAGCTCTTTTTTTTCTCGAAAATTTCACGCATGTATTAGCTCAACTTGCGTTTCGTT                                                                   ]
[+] EMBL AF217085             [                                                                                                                                                    TGCGGGGGCGGCATCACGCTGCCGTCGACGGGCGCGCCGCTCCCCCCGCTGCACCCGACGCCGACGTCGCCGACGACACGGCCTCACCACCACTACTACCTCTTCTCCATCAAGCAGCTCAACTCGTTCGGCGCCGCGGCCGTGCTCGCCTTCTCCACCACCGTGCCACTCTCCGACATCGCCTTCGCCCTCCTCGTCATCCCTTACCTCGTCGTCCTCTCCGTCCTCGCCTTCCCGCAGAAGCACGGCAAGCCCAACCCGGGCGCGCCGGTCTTCCTCTGCCGCGGGCGCTTCCTCCTCAAGGGCCACGAAGCGCTCGGCTTCCTCGTCGGCGCCGCGCTCCCGGCGCTCTACATCCCTCGAACGGCCTCCGCTCGGGCGACACGGCGGGCGTCGCCGCGGCGTCCCCGCACGCGTTCCTCCTCGCCGCGCAGATCTTTACCGAGGGCCTCGCCGCGGCGTGGCCCGGGCGGTTCTCCCTCCCCGTGCGTGCCGCCGTGGTGGTGATGTACGGCGCGCGGAAGATGTTCGCGGCGTCGGAGTGGCTCCGCCAGGAGATGGAGAAGCGGGACCAGTTCGGCGGCGGCGTCGGCGGCGCGCCCGCCGTGGCGCGCCGCAGGGTGGTGGCGGGGAGGGTGCTGGCGGTGGCGAACCTCGCCTACTGGGGGATCAACCTCTTCGCCTTCCTGCTGCCGTTCTACCTGCCCAAGGCGCTCAACAGGTACTACTGCGGCAGCGACAGCAAGGAGGACGACGCCACCGCCGCCGCCGGCGCCATTGATGCCGACGACGCCAAGAAGAAGGATTCCTAGAGTGTGTTTGATCGTTCGTCGCTGCTTTCTCACTCGCGTTTGTGCAGCTTGGTGTATTAACTCTTCTTCTTAATTTTT      TTTTGAAAAATTCACGCATGTTTTAGCTCTTTTTTTTCTCGGAAATTTCACGCATGTATTAGCTCAACTTGCGTTTCGTTTGGTGAAGACCAACTTTTTGAGTTTCCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_1376#0 GCTCACTTTACTCCCGCTCCGACCAAGCCAACCAACGCGACGTCGCAGCCAGAGCGCGAA GGAATCCGCACCGGGCGCGCGGCGCGCCACCGCTTTGATCACTCTCGTCGCGCGCGGGGC GGCCATGTCAGGCGGCGTAGGGCCGACGTGCGGGGGCGGCATCACGCTGCCGTCGACGGG CGCGCCGCTCCCCCCGCTGCACCCGACGCCGACGTCGCCGACGGCGCGGCCTCACCACCA CTACTACCTCTTCTCCATCAAGCAGCTCAACTCGTTCGGCGCCGCGGCCGTGCTCGCCTT CTCCACCACCGTGCCACTCTCCGACATCGCCTTCGCCCTCCTCGTCATCCCTTACCTCGT CGTCCTCTCCGTCCTCGCCTTCCCGCAGAGGCCCGGCAAGCCCAACCCGGGCGCGCCGGT CTTCCTCGGCCGCGGCCGCTTCCTCCTCAGGGCCCACGACGCGCTCGGCTTCCTCGTCGG CGCCGCGCTCCCGGCGCTCTACATCCTCGACGGCCTCCGCTCGGGCGACACGGCGGGCGT CGCCGCGGCGTCCCCGCACGCGTTCCTCCTCGCCGCGCAGATCTTTACCGAGGGCCTCGC CGCGGCGTGGCCCGGGAGGTTCTCCCTCCCCGTGCGTGCCGCCGTGGTGGTGATGTACGG CGCGCGGAGGATGTTCGCGGCGTCGGAGTGGCTCCGCCAGGAGATGGAGAAGCGGGACCA GTTCGGCGGCGGCGTCGGCGGCGCGCCCGCCGTGGCGCGCCGCAGGGTGGTGGCGGGGAG GGTGCTGGCGGTGGCGAACCTCGCCTACTGGGGGATCAACCTCTTCGCCTTCCTGCTGCC GTTCTACCTGCCCAAGGCGTTCAACAGGTACTACTGCGGCAGCGACAGCAAGGAGGACGA CGCCACCGCCGCCGCCGGCGCCATTGACGCCGACGACGCCAAGAAGAAGGATTCCTAGAG TGTGTTTGATCGTTCGTCGCTGCTTTCTCACTCGCGTTTGTGCAGCTTGGTGTATTAGCT CTTCTTCTTAATTTTTTTTTTCTTTTGAAAAATTCACGCATGTATTAGCTCTTTTTTTTC TCGAAAATTTCACGCATGTATTAGCTCAACTTGCGTTTCGTTTGGTGAAGACCAACTTTT TGAGTTTCCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)