These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [GCCCCTTAAGAACGGTATAGTATGGCTGTATATACTTGTAAAAAATGCAAGATTGACGCCTTTCCAGTTTGGGTTGCATGGGGCCGATGCTCTAGTTCGAATGGAACATTACTCTCAAGCACGTGTGAAGTTCAAACAAGTCTCTTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAATACAATTGAAGGAGGGCCTCCTGTTGACATTTCTTCTGTCCGTTCTATGTACTAACATTTAGCAAAAAGTGCAGCTACCATTTTTGATGATTCACTTTCTGCTGATGCTTACCTCAATGTTCTCTACATGCCATCCACATTCCCACCATCTGAGAGGTCCAGGCAATCGAAAGGTCCTATGGACAGCCAGTTTGAATCTGTTGGTTCATACCTAGAAGATGGTCCTCGCAGCAACCTTGATGGAATCCGATATGCCGAGTGTATTCATTACTTGCAAGAATATGCTCGACCAGAAATGCTTGCTTTCATGTTCAAGCATGGTCATTATGCAGAAGCGTGCTCCCTGTTCTTTCCATCAAATCAACCAACTGATGAAGGGGAAACATCTTTGTCTTCAATTCCGCGAAATGATCCTTTGACAACTGATTATGGGACAATAGATGACTTGGGTGATCTGTGTCTTGGATATGGTGCTAAGACTGCTTTGGAAAACACACTCTT] [+] EMBL CB678156 [GCCCCTTAAGAACGGTATAGTATGGCTGTATATACTTGTAAAAAATGCAAGATTGACGCCTTTCCAGTTTGGGTTGCATGGGGCCGATGCTCTAGTTCGAATGGAACATTACTCTCAAGCACGTGTGAAGTTCAAACAAGTCTCTTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAATACAATTGAAGGAGGGCCTCCTGTTGACATTTCTTCTGTCCGTTCTATGTACTAACATTTAGCAAAAAGTGCAGCTACCATTTTTGATGATTCACTTTCTGCTGATGCTTACCTCAATGTTCTCTACATGCCATCCACATTCCCACCATCTGAGAGGTCCAGGCAATCGAAAGGTCCTATGGACAGCCAGTTTGAATCTGTTGGTTCATACCTAGAAGATGGTCCTCGCAGCAACCTTGATGGAATCCGATATGCCGAGTGTATTCATTACTTGCAAGAATATGCTCGACCAGAAATGCTTGCTTTCATGTTCAAGCATGGTCATTATGCAGAAGCGTGCTCCCTGTTCTTTCCATCAAATCAACCAACTGATGAAGGGGAAACATCTTTGTCTTCAATTCCGCGAAATGATCCTTTGACAACTGATTATGGGACAATAGATGACTTGGGTGATCTGTGTCTTGGATATGGTGCTAAGACTGCTTTGGAAAACACACTCTT] consensusID : consensus_1377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [TTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAGTACAATTGAAAGANGGCTCCTGTTGACGTTCTTCTGTCCGTTCTATGTNCGAACATTTAGCAAAAAGTGCACTACCATTTTTGATGATCACTTTCTGCTGATGCTTACTCAATGTTCTCTACATGCCATCCACATTCCCACNATCTGAGANGTCCAGGCAATCNAAANGTCTATGGACGCCNTTTGAATCTGNTGGGTCNTNCCTAAAAAATTGTCCTCGCAGCAACCCTGATGGAATCCGATATGCCGAGTGTNTTCCATTACTTGCNAGAATATGCTCNAACANAAATGCTTGCTTTCATGTTTCAGGCNTGGTCCNTTATGCANAAACCGTGCTCCCCTGTTCCTTTCCNTCCAATCNANCCAACTGAATGAAAGGGGAAACATCTTTTGTCTTCCATTCCNCCAAAATGATTCCTTTGAANNACTGGATTAT] [+] EMBL BE228449 [TTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAGTACAATTGAAAGANGGCTCCTGTTGACGTTCTTCTGTCCGTTCTATGTNCGAACATTTAGCAAAAAGTGCACTACCATTTTTGATGATCACTTTCTGCTGATGCTTACTCAATGTTCTCTACATGCCATCCACATTCCCACNATCTGAGANGTCCAGGCAATCNAAANGTCTATGGACGCCNTTTGAATCTGNTGGGTCNTNCCTAAAAAATTGTCCTCGCAGCAACCCTGATGGAATCCGATATGCCGAGTGTNTTCCATTACTTGCNAGAATATGCTCNAACANAAATGCTTGCTTTCATGTTTCAGGCNTGGTCCNTTATGCANAAACCGTGCTCCCCTGTTCCTTTCCNTCCAATCNANCCAACTGAATGAAAGGGGAAACATCTTTTGTCTTCCATTCCNCCAAAATGATTCCTTTGAANNACTGGATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1377#0 GCCCCTTAAGAACGGTATAGTATGGCTGTATATACTTGTAAAAAATGCAAGATTGACGCC 60 consensus_1377#1 ------------------------------------------------------------ consensus_1377#0 TTTCCAGTTTGGGTTGCATGGGGCCGATGCTCTAGTTCGAATGGAACATTACTCTCAAGC 120 consensus_1377#1 ------------------------------------------------------------ consensus_1377#0 ACGTGTGAAGTTCAAACAAGTCTCTTCAACAATACAAAGGGGATGCAACTCATTTTGTCC 180 consensus_1377#1 ------------------------TTCAACAATACAAAGGGGATGCAACTCATTTTGTCC 36 ************************************ consensus_1377#0 TTGAAATCATCAATACAATTGAAGGAGGGCCTCCTGTTGACATTTCTTCTGTCCGTTCTA 240 consensus_1377#1 TTGAAATCATCAGTACAATTGAAAGANGGC-TCCTGTTGACGTT-CTTCTGTCCGTTCTA 94 ************ ********** ** *** ********** ** *************** consensus_1377#0 TGTACTAACATTTAGCAAAAAGTGCAGCTACCATTTTTGATGATTCACTTTCTGCTGATG 300 consensus_1377#1 TGTNCGAACATTTAGCAAAAAGTGCA-CTACCATTTTTGATGAT-CACTTTCTGCTGATG 152 *** * ******************** ***************** *************** consensus_1377#0 CTTACCTCAATGTTCTCTACATGCCATCCACATTCCCACCATCTGAGAGGTCCAGGCAAT 360 consensus_1377#1 CTTAC-TCAATGTTCTCTACATGCCATCCACATTCCCACNATCTGAGANGTCCAGGCAAT 211 ***** ********************************* ******** *********** consensus_1377#0 CGAAAGGTCCTATGGACAGCCAGTTTGAATCTGTTGGTTCATACCTAGAAGATGGTCCTC 420 consensus_1377#1 CNAAANGTC-TATGGACGCCN--TTTGAATCTGNTGGGTCNTNCCTAAAAAATTGTCCTC 268 * *** *** ******* * ********** *** ** * **** ** ** ****** consensus_1377#0 GCAGCAACCTTGATGGAATCCGATATGCCGAGTGTATTC-ATTACTTGCAAGAATATGCT 479 consensus_1377#1 GCAGCAACCCTGATGGAATCCGATATGCCGAGTGTNTTCCATTACTTGCNAGAATATGCT 328 ********* ************************* *** ********* ********** consensus_1377#0 CGACCAGAAATGCTTGCTTTCATGTT-CAAGCATGGTC-ATTATGCAGAAGC-GTGCTCC 536 consensus_1377#1 CNAACANAAATGCTTGCTTTCATGTTTCAGGCNTGGTCCNTTATGCANAAACCGTGCTCC 388 * * ** ******************* ** ** ***** ******* ** * ******* consensus_1377#0 C-TGTTC-TTTCCATCAAATCAACC-AACTGAT--GAAGGGGAAACATCTTT-GTCTTCA 590 consensus_1377#1 CCTGTTCCTTTCCNTCCAATCNANCCAACTGAATGAAAGGGGAAACATCTTTTGTCTTCC 448 * ***** ***** ** **** * * ****** **************** ****** consensus_1377#0 ATTCCGC-GAAATGATCCTTT--GACAACTG-ATTATGGGACAATAGATGACTTGGGTGA 646 consensus_1377#1 ATTCCNCCAAAATGATTCCTTTGAANNACTGGATTAT----------------------- 485 ***** * ******* * ** * **** ***** consensus_1377#0 TCTGTGTCTTGGATATGGTGCTAAGACTGCTTTGGAAAACACACTCTT 694 consensus_1377#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||