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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[GCCCCTTAAGAACGGTATAGTATGGCTGTATATACTTGTAAAAAATGCAAGATTGACGCCTTTCCAGTTTGGGTTGCATGGGGCCGATGCTCTAGTTCGAATGGAACATTACTCTCAAGCACGTGTGAAGTTCAAACAAGTCTCTTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAATACAATTGAAGGAGGGCCTCCTGTTGACATTTCTTCTGTCCGTTCTATGTACTAACATTTAGCAAAAAGTGCAGCTACCATTTTTGATGATTCACTTTCTGCTGATGCTTACCTCAATGTTCTCTACATGCCATCCACATTCCCACCATCTGAGAGGTCCAGGCAATCGAAAGGTCCTATGGACAGCCAGTTTGAATCTGTTGGTTCATACCTAGAAGATGGTCCTCGCAGCAACCTTGATGGAATCCGATATGCCGAGTGTATTCATTACTTGCAAGAATATGCTCGACCAGAAATGCTTGCTTTCATGTTCAAGCATGGTCATTATGCAGAAGCGTGCTCCCTGTTCTTTCCATCAAATCAACCAACTGATGAAGGGGAAACATCTTTGTCTTCAATTCCGCGAAATGATCCTTTGACAACTGATTATGGGACAATAGATGACTTGGGTGATCTGTGTCTTGGATATGGTGCTAAGACTGCTTTGGAAAACACACTCTT]
[+] EMBL CB678156 [GCCCCTTAAGAACGGTATAGTATGGCTGTATATACTTGTAAAAAATGCAAGATTGACGCCTTTCCAGTTTGGGTTGCATGGGGCCGATGCTCTAGTTCGAATGGAACATTACTCTCAAGCACGTGTGAAGTTCAAACAAGTCTCTTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAATACAATTGAAGGAGGGCCTCCTGTTGACATTTCTTCTGTCCGTTCTATGTACTAACATTTAGCAAAAAGTGCAGCTACCATTTTTGATGATTCACTTTCTGCTGATGCTTACCTCAATGTTCTCTACATGCCATCCACATTCCCACCATCTGAGAGGTCCAGGCAATCGAAAGGTCCTATGGACAGCCAGTTTGAATCTGTTGGTTCATACCTAGAAGATGGTCCTCGCAGCAACCTTGATGGAATCCGATATGCCGAGTGTATTCATTACTTGCAAGAATATGCTCGACCAGAAATGCTTGCTTTCATGTTCAAGCATGGTCATTATGCAGAAGCGTGCTCCCTGTTCTTTCCATCAAATCAACCAACTGATGAAGGGGAAACATCTTTGTCTTCAATTCCGCGAAATGATCCTTTGACAACTGATTATGGGACAATAGATGACTTGGGTGATCTGTGTCTTGGATATGGTGCTAAGACTGCTTTGGAAAACACACTCTT]
consensusID : consensus_1377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[TTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAGTACAATTGAAAGANGGCTCCTGTTGACGTTCTTCTGTCCGTTCTATGTNCGAACATTTAGCAAAAAGTGCACTACCATTTTTGATGATCACTTTCTGCTGATGCTTACTCAATGTTCTCTACATGCCATCCACATTCCCACNATCTGAGANGTCCAGGCAATCNAAANGTCTATGGACGCCNTTTGAATCTGNTGGGTCNTNCCTAAAAAATTGTCCTCGCAGCAACCCTGATGGAATCCGATATGCCGAGTGTNTTCCATTACTTGCNAGAATATGCTCNAACANAAATGCTTGCTTTCATGTTTCAGGCNTGGTCCNTTATGCANAAACCGTGCTCCCCTGTTCCTTTCCNTCCAATCNANCCAACTGAATGAAAGGGGAAACATCTTTTGTCTTCCATTCCNCCAAAATGATTCCTTTGAANNACTGGATTAT]
[+] EMBL BE228449 [TTCAACAATACAAAGGGGATGCAACTCATTTTGTCCTTGAAATCATCAGTACAATTGAAAGANGGCTCCTGTTGACGTTCTTCTGTCCGTTCTATGTNCGAACATTTAGCAAAAAGTGCACTACCATTTTTGATGATCACTTTCTGCTGATGCTTACTCAATGTTCTCTACATGCCATCCACATTCCCACNATCTGAGANGTCCAGGCAATCNAAANGTCTATGGACGCCNTTTGAATCTGNTGGGTCNTNCCTAAAAAATTGTCCTCGCAGCAACCCTGATGGAATCCGATATGCCGAGTGTNTTCCATTACTTGCNAGAATATGCTCNAACANAAATGCTTGCTTTCATGTTTCAGGCNTGGTCCNTTATGCANAAACCGTGCTCCCCTGTTCCTTTCCNTCCAATCNANCCAACTGAATGAAAGGGGAAACATCTTTTGTCTTCCATTCCNCCAAAATGATTCCTTTGAANNACTGGATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1377#0 GCCCCTTAAGAACGGTATAGTATGGCTGTATATACTTGTAAAAAATGCAAGATTGACGCC 60
consensus_1377#1 ------------------------------------------------------------
consensus_1377#0 TTTCCAGTTTGGGTTGCATGGGGCCGATGCTCTAGTTCGAATGGAACATTACTCTCAAGC 120
consensus_1377#1 ------------------------------------------------------------
consensus_1377#0 ACGTGTGAAGTTCAAACAAGTCTCTTCAACAATACAAAGGGGATGCAACTCATTTTGTCC 180
consensus_1377#1 ------------------------TTCAACAATACAAAGGGGATGCAACTCATTTTGTCC 36
************************************
consensus_1377#0 TTGAAATCATCAATACAATTGAAGGAGGGCCTCCTGTTGACATTTCTTCTGTCCGTTCTA 240
consensus_1377#1 TTGAAATCATCAGTACAATTGAAAGANGGC-TCCTGTTGACGTT-CTTCTGTCCGTTCTA 94
************ ********** ** *** ********** ** ***************
consensus_1377#0 TGTACTAACATTTAGCAAAAAGTGCAGCTACCATTTTTGATGATTCACTTTCTGCTGATG 300
consensus_1377#1 TGTNCGAACATTTAGCAAAAAGTGCA-CTACCATTTTTGATGAT-CACTTTCTGCTGATG 152
*** * ******************** ***************** ***************
consensus_1377#0 CTTACCTCAATGTTCTCTACATGCCATCCACATTCCCACCATCTGAGAGGTCCAGGCAAT 360
consensus_1377#1 CTTAC-TCAATGTTCTCTACATGCCATCCACATTCCCACNATCTGAGANGTCCAGGCAAT 211
***** ********************************* ******** ***********
consensus_1377#0 CGAAAGGTCCTATGGACAGCCAGTTTGAATCTGTTGGTTCATACCTAGAAGATGGTCCTC 420
consensus_1377#1 CNAAANGTC-TATGGACGCCN--TTTGAATCTGNTGGGTCNTNCCTAAAAAATTGTCCTC 268
* *** *** ******* * ********** *** ** * **** ** ** ******
consensus_1377#0 GCAGCAACCTTGATGGAATCCGATATGCCGAGTGTATTC-ATTACTTGCAAGAATATGCT 479
consensus_1377#1 GCAGCAACCCTGATGGAATCCGATATGCCGAGTGTNTTCCATTACTTGCNAGAATATGCT 328
********* ************************* *** ********* **********
consensus_1377#0 CGACCAGAAATGCTTGCTTTCATGTT-CAAGCATGGTC-ATTATGCAGAAGC-GTGCTCC 536
consensus_1377#1 CNAACANAAATGCTTGCTTTCATGTTTCAGGCNTGGTCCNTTATGCANAAACCGTGCTCC 388
* * ** ******************* ** ** ***** ******* ** * *******
consensus_1377#0 C-TGTTC-TTTCCATCAAATCAACC-AACTGAT--GAAGGGGAAACATCTTT-GTCTTCA 590
consensus_1377#1 CCTGTTCCTTTCCNTCCAATCNANCCAACTGAATGAAAGGGGAAACATCTTTTGTCTTCC 448
* ***** ***** ** **** * * ****** **************** ******
consensus_1377#0 ATTCCGC-GAAATGATCCTTT--GACAACTG-ATTATGGGACAATAGATGACTTGGGTGA 646
consensus_1377#1 ATTCCNCCAAAATGATTCCTTTGAANNACTGGATTAT----------------------- 485
***** * ******* * ** * **** *****
consensus_1377#0 TCTGTGTCTTGGATATGGTGCTAAGACTGCTTTGGAAAACACACTCTT 694
consensus_1377#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||