These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1919 fasta sequence [CCGACTGCGCTGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGTTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCATCGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTGGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGGGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGGGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTGGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACAGGTACTGTACAGTATCCTGGATAGATTTTTAGTTTTTGGTTGCAAAAAAAAAGG] [+] EMBL CB623052 [CCGACTGCGCTGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGTTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCAACGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAACAACACCGCCTTCTGCGCTTTGTTCTGACTGAT ] [+] EMBL CB620625 [ CAGCTTCGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGATCTGACTGATGGAAT ] [+] EMBL CB620623 [ CACCATCGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGT ] [+] EMBL CB664989 [ TCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGC ] [-] EMBL CB620624 [ TCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCGCTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCGGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTGGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGGGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGGGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTGGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACAGGTACTGTACAGTATCCTGGATAGATTTTTAGTTTTTGGTTGCAAAAAAAAAGG] consensusID : consensus_13773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1649 fasta sequence [GTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGACTGCGATGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGCTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCAACGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC-TTTTTTGACATAGATAGGGATTCTTTTTTTTTTTTTTTGAGCTTGGTATTCCTAACTCCACAAATTTATAGATCTAGACCTGTGATCTCGTTGA] [+] EMBL AK122048 [GTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGACTGCGATGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGCTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCAACGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTGGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGCTATGGATTCTTTTTTTTTTTTTTTGAGCTTGGTATTCCTAACTCCACAAATTTATAGATCTAGACCTGTGATCTCGTTGA] [-] EMBL CB620626 [ gtgnAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCAATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTGGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCGCTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGA CGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTAGGCTATCCTGGATAGATTTTTAGTTTTTTGTTC ] [-] EMBL CB664990 [ AGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCCTTTTTTTGACAaaaaaaaga ] [-] EMBL CB664937 [ AACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATTTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTTGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTCCACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGATAGGGATTC TTTTTTTTTTTTGAGCTTGGTAaaaaaa ] [-] EMBL CB664893 [ AGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGCTAGGGATTCTTTTTTTTTTTT ] [-] EMBL CB664935 [ AATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCGGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGAAAGGGATTC TTTTTTTTTTTTGAGCTTGGT ] consensusID : consensus_13773#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 810 fasta sequence [CTGCTATG-GCGTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTA] [+] EMBL CB664934 [CTGCTATG GCGTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTA] [+] EMBL CB664936 [CTGCTATGCGCGTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAGAATGACCC ] [+] EMBL CB664892 [CTGCTATG GCGTATACCACAAAACCCGCCTTCGCGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCGAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTNCAAACCAAGCCACTGCACAGAAGCTTCTGCAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13773#1 ------------------------------------------------------------ consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 CCGACTGCGCTGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAG 60 consensus_13773#1 ------------------------------------------------------------ consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 AGGTTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCATCGAGATC 120 consensus_13773#1 ------------------------------------------------------------ consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 ATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTC 180 consensus_13773#1 ------------------------------------------------------------ consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCC 240 consensus_13773#1 ------------------------------------------------------------ consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTG 300 consensus_13773#1 ------------------GTATACCAC--AAAACCCGCCTTCACGTCTCCTACCCTAGCA 40 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGAT 360 consensus_13773#1 CTCTCCCAGACCTCGCCGGA------GAACACTTCGCCCCCC----GACTGCGA-----T 85 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 ATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGT 420 consensus_13773#1 GGC-GGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCC-TCATCAGGA-GAGGCT--C 140 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGC 480 consensus_13773#1 CTTCAATCCCTCTCCGCCCGCGGGTGGTGC---TTCCGTGACCCCAGCA-ACGAGA---- 192 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGT-ATCCGAGCAGATGAAAAAGA 539 consensus_13773#1 ----------TCATCCAGGA--GCTA-CTCCACGCCTCCC--------------CCTCGC 225 consensus_13773#2 --------------------------------------------------------CTGC 4 consensus_13773#0 TGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGT 599 * consensus_13773#1 CGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACC-TGA--GGCTCTTCGGCG 282 consensus_13773#2 TATGGC-GTATACCACAAAACCCGCCTTCACGTCTCCTACCC-TAG--CACTCTCCCAGA 60 consensus_13773#0 TGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTC 659 * * * * * * ** * consensus_13773#1 GCAAGTCGCTCCCTGA-CCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTAC-CT 340 consensus_13773#2 CC---TCGCCGGAGAA-CACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTAC-CT 115 consensus_13773#0 ATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACT 719 * * * * * * *** *** * ** consensus_13773#1 CCATGGCCCCATCGT------------CCTACAGGTAGTATCAGTAAGAGATATATATAG 388 consensus_13773#2 CCATGGCCCCATCGT------------CCTACAGGTAGTATCAGTAAGAGATATATATAG 163 consensus_13773#0 GTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAG 779 ** *** * * * ***************************** consensus_13773#1 AAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCT 448 consensus_13773#2 AAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCT 223 consensus_13773#0 AAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCT 839 ************************************************************ consensus_13773#1 GACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGA 508 consensus_13773#2 GACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGA 283 consensus_13773#0 GACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGA 899 ************************************************************ consensus_13773#1 AGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCAT 568 consensus_13773#2 AGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCAT 343 consensus_13773#0 AGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCAT 959 ************************************************************ consensus_13773#1 ATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGA 628 consensus_13773#2 ATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGA 403 consensus_13773#0 ATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGA 1019 ************************************************************ consensus_13773#1 AGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCA 688 consensus_13773#2 AGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCA 463 consensus_13773#0 AGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCA 1079 ************************************************************ consensus_13773#1 AAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAG 748 consensus_13773#2 AAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAG 523 consensus_13773#0 AAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAG 1139 ************************************************************ consensus_13773#1 TAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCG 808 consensus_13773#2 TAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCG 583 consensus_13773#0 TAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCG 1199 ************************************************************ consensus_13773#1 TCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAA 868 consensus_13773#2 TCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAA 643 consensus_13773#0 TCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAA 1259 ************************************************************ consensus_13773#1 CAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAG 928 consensus_13773#2 CAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAG 703 consensus_13773#0 CAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAG 1319 ************************************************************ consensus_13773#1 TGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCA 988 consensus_13773#2 TGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCA 763 consensus_13773#0 TGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCA 1379 ************************************************************ consensus_13773#1 GGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGA 1048 consensus_13773#2 GGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTA------------- 810 consensus_13773#0 GGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGA 1439 *********************************************** consensus_13773#1 AGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTC 1108 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 AGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTC 1499 consensus_13773#1 CACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCA 1168 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 CACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCA 1559 consensus_13773#1 GGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTT 1228 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GGAGCAACTAGATCTGGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTT 1619 consensus_13773#1 GCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTT 1288 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGGGGGAGAAGAGATTT 1679 consensus_13773#1 TCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGG 1348 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 TCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGGG------AGGCAGGGG 1733 consensus_13773#1 AAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAA 1408 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 AAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTGGTGGTAGACCAA 1793 consensus_13773#1 GTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAAT 1468 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 GTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAAT 1853 consensus_13773#1 TCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGAT 1528 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 TCAGAAACAACAGGTACTGTACAGTATCCTGGATAGATTTTTAGTTTTTGGTTGCAAAAA 1913 consensus_13773#1 GCATGGAATCAGCATATGATTAGGCCCTTTTTTGACATAGATAGGGATTCTTTTTTTTTT 1588 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 AAAAGG------------------------------------------------------ 1919 consensus_13773#1 TTTTTGAGCTTGGTATTCCTAACTCCACAAATTTATAGATCTAGACCTGTGATCTCGTTG 1648 consensus_13773#2 ------------------------------------------------------------ consensus_13773#0 ------------------------------------------------------------ consensus_13773#1 A 1649 consensus_13773#2 - consensus_13773#0 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||