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Oryza sativa
cluster # 13775 cluster # 13775       Sequences # 14       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13775#0 length = 1168 sequences # 3  
consensus_13775#1 length = 684 sequences # 9  
consensus_13775#2 length = 408 sequences # 1  
consensus_13775#3 length = 380 sequences # 1  

consensusID : consensus_13775#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1168
fasta sequence
                              [ACCCGCCGCTTCGCCCGTCATCGGCGATCGCAGCACTCGCCCGCCGCCGCCGCTCCACCAGTCCACCCACAGCGCGAGCAGCGTGCTCAGCATGTACACCAGTAGCCTCCCCGCCAGCCGTGGCGCCGACCGATAGTCCACCCCGCCGTCCCGCATCAGCCCTAACAAGAACCCCTCGTCGTGCGGCACCCTCCTTGTGTAGCACAGCCACCTCGCCGCCGAGGCGCTTCTGCGGGACTCGCCCGTGCCGGCGTCGGTGTCCTCGCCG-CCCCCCCCCCCCCCCACATCGTCCGTGGCCCTGTGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGTCGCCCGCGCGGAGGCCAGTCAAGAGGTCCGAGTAGGCCACCTCCTTGGCTGCATTCTTGGGCAGCGCGAGGCGGACAGCGAGGAGGAGGAACGCCAGGACGATGGGCGCCACCCACCGCCCTTCCCAGTAGTCACATCTAGCCTCCTCCCCTCCTCCTGCCATTGATGGATGCTTACCTAATTTGCCGGAAGTGACGACGGACCGGAGCGCGGCGTTCCACAGCGCGTCGACAGGGTAAAACCAGAGGAGGTTGAAGAGAAACAAGGTGAGCACGGCGCAGACGAGCCAAGCGGAGACGACTCTATTGAGGAAGCTGCAAAGGTTGCTGGTGGTGGTGGTGGTGGTGGTCGCCGGAGTTGGACACGACAGCCGGGTGGCGCCGTGGCCCGTGACGCGGTGGCTCGCGCGTGGCCATAGCTAGCGCGTACGACGAGGACGACGAGGTCGTACGACGTCGAACAGGTGAGAGTGGTGACTTCAGATAGTTTGTACATGTAGAGAGGAGATGGATGGAGTGTAACTTGGAAAGCACAGCATTATTGCTTAATCGAACATAAAGGGGATTAACATCTGGAGTAGAGAGGAAGTGATTAATCTGGCTAATTGAAGTATAGTAAATATTTCGAGTGGCCAAAGTGTCCCTAATGTTTGTGTCAAATCTAATCCACTGACGTTCAAAGTTTGTAGCATTTACATTGTTGACCAAGGGTAAAATTGTCTTTAATGAGTGTTTCTTTTCTCCAATTCCTTCGGAAATAATAAAATAAAGCAACGAGTGTCTGATAGCTAATTCCCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK068686             [ACCCGCCGCTTCGCCCGTCATCGGCGATCGCAGCACTCGCCCGCCGCCGCCGCTCCACCAGTCCACCCACAGCGCGAGCAGCGTGCTCAGCATGTACACCAGTAGCCTCCCCGCCAGCCGTGGCGCCGACCGATAGTCCACCCCGCCGTCCCGCATCAGCCCTAACAAGAACCCCTCGTCGTGCGGCACCCTCCTTGTGTAGCACAGCCACCTCGCCGCCGAGGCGCTTCTGCGGGACTCGCCCGTGCCGGCGTCGGTGTCCTCGCCG CCCCCCCCCCCCCCCACATCGTCCGTGGCCCTGTGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGTCGCCCGCGCGGAGGCCAGTCAAGAGGTCCGAGTAGGCCACCTCCTTGGCTGCATTCTTGGGCAGCGCGAGGCGGACAGCGAGGAGGAGGAACGCCAGGACGATGGGCGCCACCCACCGCCCTTCCCAGTAGTCACATCTAGCCTCCTCCCCTCCTCCTGCCATTGATGGATGCTTACCTAATTTGCCGGAAGTGACGACGGACCGGAGCGCGGCGTTCCACAGCGCGTCGACAGGGTAAAACCAGAGGAGGTTGAAGAGAAACAAGGTGAGCACGGCGCAGACGAGCCAAGCGGAGACGACTCTATTGAGGAAGCTGCAAAGGTTGCTGGTGGTGGTGGTGGTGGTGGTCGCCGGAGTTGGACACGACAGCCGGGTGGCGCCGTGGCCCGTGACGCGGTGGCTCGCGCGTGGCCATAGCTAGCGCGTACGACGAGGACGACGAGGTCGTACGACGTCGAACAGGTGAGAGTGGTGACTTCAGATAGTTTGTACATGTAGAGAGGAGATGGATGGAGTGTAACTTGGAAAGCACAGCATTATTGCTTAATCGAACATAAAGGG                                                                                                                                                                                                                                                                ]
[+] EMBL CB665054             [             CCCGTCCTCGGCGATCGCAGCACTCGCCCGCCGCCGCCGCTCCACCAGTCCACCCACAGCGCGAGCAGCGTGCTCAGCATGTACACCAGTAGCCTCCCCGCCAGCCGTGGCGCCGACCGATAGTCCACCCCGCCGTCCCGCATCAGCCCTAACAAGAACCCCTCGTCGTGCGGCACCCTCCTTGTGTAGCACAGCCACCTCGCCGCCGAGGCGCTTCTGCGGGACTCGCCCGTGCCGGCGTCGGTGTCCTCGCCGCCCCCCCCCCCCCCCCACATCGTCCGTGGCCCTGTGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGTCGCCCGCGCGGAGGCCAGTCAAGAGGTCCGAGTAGGCCACCTCCTTGGCTGCATTCTTGGGCAGCGCGAGGCGGACAGCGAGGAGGAGGAACGCCAGGACGATGGGCGCCACCCACCGCCCTTCCCAGTAGTCACATCTAGCCTCCTCCCCTCCTCCTGCCATTGATGGATGCTTACCTAATTTGCCGGAAGTGACGACGGACCGGAGCGCGGCGTTCCACAGCGCGTCGACAGGGTAAAACCAGAGGAGGTTGAAGAGAAACAAGGTGAGCACGGCGCAGACGAGCCAAGCGGAGACGACTCTATTGAGGAAGCTGCAAAGGTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CA760740             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             aCAAGGGGAGACGACTCTATTGAGGAAGCTGCAAAGGTTGCTGCTGGTGGTGGTGGTGGTGGTCGCCGGAGTTGGACACGACAGCCGGGTGGCGCCGTGGCCCGTGACGCGGTGGCTCGCGCGCGGCCATAGCTAGCGCGTACGACGAGGACGACGAGGTCGTACGACGTCGAACAGGTGAGAGTGGTGACTTCAGATAGTTTGTACATGTAGAGAGGAGATGGATGGAGTGTAACTTGGAAAGCACAGCATTATTGCTTAATCGAACATAAAGGGGATTAACATCTGGAGTAGAGAGGAAGTGATTAATCTGGCTAATTGAAGTATAGTAAATATTTCGAGTGGCCAAAGTGTCCCTAATGTTTGTGTCAAATCTAATCCACTGACGTTCAAAGTTTGTAGCATTTACATTGTTGACCAAGGGTAAAATTGTCTTTAATGAGTGTTTCTTTTCTCCAATTCCTTCGGAAATAATAAAATAAAGCAACGAGTGTCTGATAGCTAATTCCCAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13775#0 ACCCGCCGCTTCGCCCGTCATCGGCGATCGCAGCACTCGCCCGCCGCCGCCGCTCCACCA GTCCACCCACAGCGCGAGCAGCGTGCTCAGCATGTACACCAGTAGCCTCCCCGCCAGCCG TGGCGCCGACCGATAGTCCACCCCGCCGTCCCGCATCAGCCCTAACAAGAACCCCTCGTC GTGCGGCACCCTCCTTGTGTAGCACAGCCACCTCGCCGCCGAGGCGCTTCTGCGGGACTC GCCCGTGCCGGCGTCGGTGTCCTCGCCGCCCCCCCCCCCCCCCACATCGTCCGTGGCCCT GTGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGTCGCCCGCGCG GAGGCCAGTCAAGAGGTCCGAGTAGGCCACCTCCTTGGCTGCATTCTTGGGCAGCGCGAG GCGGACAGCGAGGAGGAGGAACGCCAGGACGATGGGCGCCACCCACCGCCCTTCCCAGTA GTCACATCTAGCCTCCTCCCCTCCTCCTGCCATTGATGGATGCTTACCTAATTTGCCGGA AGTGACGACGGACCGGAGCGCGGCGTTCCACAGCGCGTCGACAGGGTAAAACCAGAGGAG GTTGAAGAGAAACAAGGTGAGCACGGCGCAGACGAGCCAAGCGGAGACGACTCTATTGAG GAAGCTGCAAAGGTTGCTGGTGGTGGTGGTGGTGGTGGTCGCCGGAGTTGGACACGACAG CCGGGTGGCGCCGTGGCCCGTGACGCGGTGGCTCGCGCGTGGCCATAGCTAGCGCGTACG ACGAGGACGACGAGGTCGTACGACGTCGAACAGGTGAGAGTGGTGACTTCAGATAGTTTG TACATGTAGAGAGGAGATGGATGGAGTGTAACTTGGAAAGCACAGCATTATTGCTTAATC GAACATAAAGGGGATTAACATCTGGAGTAGAGAGGAAGTGATTAATCTGGCTAATTGAAG TATAGTAAATATTTCGAGTGGCCAAAGTGTCCCTAATGTTTGTGTCAAATCTAATCCACT GACGTTCAAAGTTTGTAGCATTTACATTGTTGACCAAGGGTAAAATTGTCTTTAATGAGT GTTTCTTTTCTCCAATTCCTTCGGAAATAATAAAATAAAGCAACGAGTGTCTGATAGCTA ATTCCCAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13775#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 684
fasta sequence
                              [GCGTCTCCTGCAACTGCCCTTGCCAGAAGAGTTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGAC-GAGTTCCTCCT-TGGCCTCATCGACGCCCTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCT-GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC-GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC-GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT-TGGCCGCGTTCTTGGGCAGCGCGAGGCGGGCGGCGAGGAGGA-GACCGCGAGACAATGGCGCGACCGCAAG-TATTCCCTTTAGG]

[-] EMBL BU673785             [GCGTCTCCTGCAACTGCCATTGCCAGAAGAGTTTTCCCAGTTCGTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGAC GAGTTCCTCTT TGGCCTCATCGACGCCATGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGCAGCGGAGACCAGACAGGAGGTCCGAGTAGGCCACCTCCTGTGGCCGCGTTCTTGGGCAGCGAGAGGCGGGCGGCGAGGAGGA GACCGCGAGACAATGGCGCAACCG AAGCTATTC        ]
[-] EMBL CB965955             [     TCCTGCAACTGCCCTTGCCAGAAGAGTTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGAC GAGTTCCTCCT TGGCCTCATCGACGCCNTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCTGGCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC GCGCCCGCGCCGTCGTCGTCGCT CCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTA ATGCGGCGGGAGTCCT CTCG ACGCGAC GCGGTGACGGCGCCCGC  CGGAGGCCAG CAGGAGGTCCGAGTAGGCCACCTCCT   G CGCGTTCTT GGCAGCGCGA GC GGC GCGAGGAGGA GACCGCGAGAC ATGG   GACC C AG TA           ]
[-] EMBL BI305933             [       CTGCAACTGCCCTTGCCAGAAGAGTTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGAC GAGTTCCTCCT TGGCCTCATCGACGCCCTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT TGGCCGCGTTCTTGGGCAGCGCGAGGCGGGCGGCGAGGAGGAGGACCGCGAGg                                ]
[-] EMBL CB967435             [        TGCAACTGCCCTTGCCAGAAGAGTTTTCNCAGTTCCTGGAGGCCCAACAAGCAGAACACCCTTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGACGGAGTTCCTCCT TGGCCTCATCGACGCCNTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT TGGCCG NTTCTT GGCAGCGCGAGGC GGCGGCGAGGAGGA GACCGC                                    ]
[-] EMBL BI306442             [         GCAACTGCCCTTGCCAGAAGAGTTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGAC GAGTTCCTCCT TGGCCTCATCGACGCCCTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT TGGCCGCGTTCTTGGGCAGCGCGAGGCGGGCGGCGAGGAGGAGGACCGCGAGg                                ]
[-] EMBL BI306134             [             CTGCCCTTGCCAGAAGAGTTTTCCCAGTTCGTGGAGGCCCAACAAGCAGAACACCCATGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGAC GAGTTCCTCCT TGGCCTCATCGACGCCCTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTGT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT TGGCCGCGTTCTTGGGCAGCGCGAGGCGGGCGGCGAGGAGGAGGACCGCGAGg                                ]
[-] EMBL CB967025             [                        AGAAGAGTTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACACCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAACTCACTACCTCGAC GAGTTCCTCCT TGGCCTCATCGACGCCCTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCT      CGCCC GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT TGGCCGCGTTCTTGGGCAGCGCGAGGCGGGCGGCGAGGAGAG GACCGCGAGgac                              ]
[-] EMBL CB964711             [                                                                                                                                        AGTTCCTCCTGTGGCCTCATCGACGCTCTGGACATCGTCGAACCCCACTCGCTGCTTCCTCGGCCGGCTCCGCTTCTCT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCC GCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT T GCCGCGTTCTT GGCAGCGCGAGGC GGC GCGAGGAGGA GACCGC AGACAATGGCGCG CCGC                 ]
[-] EMBL CB967373             [                                                                                                                                                                                AACCCCACTCGCTGCTTCCTCGGCCGGCCCCGCTTCTCT GCGCCGCCACCGGCGGACATCTGCCGCTGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATGTCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGCATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTCGCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCCGGCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGTGACGGCGCCCGC GCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCCT T GCCGCGTTCTT GGCAGCGCGAGGC GGCGGCGAGGAGGA GACCGCGAGACGATGG GCGACCGCAAG TATTCCCTTTAGG]


>consensus_13775#1 GCGTCTCCTGCAACTGCCCTTGCCAGAAGAGTTTTCCCAGTTCCTGGAGGCCCAACAAGC AGAACACCCCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAA CTCACTACCTCGACGAGTTCCTCCTTGGCCTCATCGACGCCCTGGACATCGTCGAACCCC ACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCTGCGCCGCCACCGGCGGACATCTGCCGC TGTATGAACCACATCATCGGCAGCAGCGACACCCACAGCGTGAGCAGCGTGCTCAGCATG TCCACCAGCAGCCTCCCCGCCGGCCGTGGCGCCGACCGGTAGTCCACCCCGCCGTCCCGC ATCAGCCCCAGCAAGAACCCCTCGTCGTGCGGCACCCTCCTCGCGTAGCACGGCCACCTC GCCGCCGCCGCGGCGCTTCTGCGGGCCTCGCCCGCGCCCGCGCCCGCGCCGTCGTCGTCG CTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAAC GCGACGGCGGTGACGGCGCCCGCGCGGAGGCCAGCCAGGAGGTCCGAGTAGGCCACCTCC TTGGCCGCGTTCTTGGGCAGCGCGAGGCGGGCGGCGAGGAGGAGACCGCGAGACAATGGC GCGACCGCAAGTATTCCCTTTAGG



consensusID : consensus_13775#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence
                              [ATGAACCACAGTATCGGCAGCAGCGACACCCTACAGCGGGAGCAGCGGGCGTCAGCAGGGCCACCAGCAGCCGTCCCCGCCGGCCGTGGCGCCGACCGGGTAGGTCCACCCCGCCGGTCCCGGCAGTCAGCCCCAGCAAGAACCCCGTCGGTCGGGCGGCACCCGTCCGTCGCGTAGCACGGCCACCGTCGCCGCCCCCGCGGCGCCTCTGCGGGCCGCGCCCGCGCCCGCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGGACGGCGCCCGCGCGGAGGCCAGCCAGGAGGTCCGAGTAGCCACCTCCGTGCCGCGGTCTTGGGCAGCGCGAGCGGCGCGAGGAGAGA]

[-] EMBL CB965423             [ATGAACCACAGTATCGGCAGCAGCGACACCCTACAGCGGGAGCAGCGGGCGTCAGCAGGGCCACCAGCAGCCGTCCCCGCCGGCCGTGGCGCCGACCGGGTAGGTCCACCCCGCCGGTCCCGGCAGTCAGCCCCAGCAAGAACCCCGTCGGTCGGGCGGCACCCGTCCGTCGCGTAGCACGGCCACCGTCGCCGCCCCCGCGGCGCCTCTGCGGGCCGCGCCCGCGCCCGCGCCCGCGCCGTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTCCTCCTCGAACGCGACGGCGGGACGGCGCCCGCGCGGAGGCCAGCCAGGAGGTCCGAGTAGCCACCTCCGTGCCGCGGTCTTGGGCAGCGCGAGCGGCGCGAGGAGAGA]


>consensus_13775#2 ATGAACCACAGTATCGGCAGCAGCGACACCCTACAGCGGGAGCAGCGGGCGTCAGCAGGG CCACCAGCAGCCGTCCCCGCCGGCCGTGGCGCCGACCGGGTAGGTCCACCCCGCCGGTCC CGGCAGTCAGCCCCAGCAAGAACCCCGTCGGTCGGGCGGCACCCGTCCGTCGCGTAGCAC GGCCACCGTCGCCGCCCCCGCGGCGCCTCTGCGGGCCGCGCCCGCGCCCGCGCCCGCGCC GTCGTCGTCGCTGCCGCCCCCGTCGTCCGCGGCCCTGCGGAAGTAGATGCGGCGGGAGTC CTCCTCGAACGCGACGGCGGGACGGCGCCCGCGCGGAGGCCAGCCAGGAGGTCCGAGTAG CCACCTCCGTGCCGCGGTCTTGGGCAGCGCGAGCGGCGCGAGGAGAGA



consensusID : consensus_13775#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence
                              [GCCCATCAGTCCTCGCGGTCCTCCTCCTCGCGCCCGCCTCGCGCTGACCAAGAACGCGGACAAGGAGGTGGCCTACTACGGACCTCCTGTGCTGGCCTACCTGCGCGTGTGCTGCCTGTCACCTGCCTGTCGCTGTTCGACGTGAGTGACCTCCCTGGCCGCAATCTTACTTCCTGCAGTGGCCTGCTGGACTGACTGTGTGTGGCTGTGCAGCTGAACGACCGACGTGTGCTGTGTGCTGCTGGTGCTGCTGTGGCTGAGTGCCCTGCACGAATGCTGCCTGCTGGCTGTGCTGTGCGCAGGTTGTGCCTGTGACTTACGCTGCAGTGCAGTGGTTGCCTGCCACTGCATGCAGGTGGTTTCTATGCCTTGGTGTGCTT]

[+] EMBL CB966885             [GCCCATCAGTCCTCGCGGTCCTCCTCCTCGCGCCCGCCTCGCGCTGACCAAGAACGCGGACAAGGAGGTGGCCTACTACGGACCTCCTGTGCTGGCCTACCTGCGCGTGTGCTGCCTGTCACCTGCCTGTCGCTGTTCGACGTGAGTGACCTCCCTGGCCGCAATCTTACTTCCTGCAGTGGCCTGCTGGACTGACTGTGTGTGGCTGTGCAGCTGAACGACCGACGTGTGCTGTGTGCTGCTGGTGCTGCTGTGGCTGAGTGCCCTGCACGAATGCTGCCTGCTGGCTGTGCTGTGCGCAGGTTGTGCCTGTGACTTACGCTGCAGTGCAGTGGTTGCCTGCCACTGCATGCAGGTGGTTTCTATGCCTTGGTGTGCTT]


>consensus_13775#3 GCCCATCAGTCCTCGCGGTCCTCCTCCTCGCGCCCGCCTCGCGCTGACCAAGAACGCGGA CAAGGAGGTGGCCTACTACGGACCTCCTGTGCTGGCCTACCTGCGCGTGTGCTGCCTGTC ACCTGCCTGTCGCTGTTCGACGTGAGTGACCTCCCTGGCCGCAATCTTACTTCCTGCAGT GGCCTGCTGGACTGACTGTGTGTGGCTGTGCAGCTGAACGACCGACGTGTGCTGTGTGCT GCTGGTGCTGCTGTGGCTGAGTGCCCTGCACGAATGCTGCCTGCTGGCTGTGCTGTGCGC AGGTTGTGCCTGTGACTTACGCTGCAGTGCAGTGGTTGCCTGCCACTGCATGCAGGTGGT TTCTATGCCTTGGTGTGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13775#1      GCGTCTCCTGCAACTGCCCTTGCCAGAAGAGTTTTCCCAGTTCCTGGAGGCCCAACAAGC 60
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      ------------------------------------------------------------
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      AGAACACCCCTGGGTAATTTAGCTCCGAGCTTCTTGTAGTTCAGTGAACCATGCAAGCAA 120
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      ------------------------------------------------------------
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      CTCACTACCTCGACGAGTTCCTCCTTGGCCTCATCGACGCCCTGGACATCGTCGAACCCC 180
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      ------------------------------------------------------------
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ACTCGCTGCTTCCTCGGCCGGCGCCGCTTCTCTGCGCCGCCACCGGCGGACATCTGCCGC 240
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      ---------------------ACCCGCCGCTTCGC-CCGTCATCGGCGATCG-CAGCACT 37
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      TGTATGAACCACATCATCGGCAGCAGCGACACCC-ACAGCGTGAGCAGCGTGC-TCAGCA 298
consensus_13775#2      ---ATGAACCACAGTATCGGCAGCAGCGACACCCTACAGCGGGAGCAGCGGGCGTCAGCA 57
consensus_13775#0      CGCCCG--CCGCCGCCGCTCCACCAGTC-CACCC-ACAGCGCGAGCAGCGTGC-TCAGCA 92
consensus_13775#3      --------GCCCATCAGTCCTCGCGGTC-CTCCTCCTCGCGCCCGCCTCGCGC-TGACCA 50
                                * *           * *   * **     ***   **  ** ** * * **

consensus_13775#1      TGTCCACCAGCAGCC-TCCCCGCCGGCCGTGGCGCCGACCGGT--AGTCCACCC-CGCCG 354
consensus_13775#2      GGGCCACCAGCAGCCGTCCCCGCCGGCCGTGGCGCCGACCGGGTAGGTCCACCC-CGCCG 116
consensus_13775#0      TGTACACCAGTAGCC-TCCCCGCCAGCCGTGGCGCCGACCGAT--AGTCCACCC-CGCCG 148
consensus_13775#3      AGAACGCGGACAAGG-AGGTGGCCTACTACGG-ACCTCCTGTGCTGGCCTACCTGCGCGT 108
                        *  * *    *         ***  *   **  **  * *     * * ***  ***  

consensus_13775#1      TCCC--GCA-TCAGCCCCAGCAAGAACCCCTC--GTCGTGCGGCACCCTCC--TCGCGTA 407
consensus_13775#2      GTCCCGGCAGTCAGCCCCAGCAAGAACCCCGTCGGTCGGGCGGCACCCGTCCGTCGCGTA 176
consensus_13775#0      TCCC--GCA-TCAGCCCTAACAAGAACCCCTC--GTCGTGCGGCACCCTCC--TTGTGTA 201
consensus_13775#3      GTGCTGCCTGTCA--CCTGCCTGTCGCTGTTC--GACGTGAGTGACCTCCCTGGCCGCAA 164
                          *   *  ***  **   *     *       * ** * *  ***   *        *

consensus_13775#1      GCACGGCCACC-TCGCCGCC-GCCGCGGCGCTTCTGCG-GGCCTCGCCCGCGC-CCGCGC 463
consensus_13775#2      GCACGGCCACCGTCGCCGCC-CCCGCGGCGCCTCTGCG-GGCCGCGCCCGCGC-CCGCGC 233
consensus_13775#0      GCACAGCCACC----TCGCC-GCCGAGGCGCTTCTGCG-GGACTCGCCCGTGC-CGGCGT 254
consensus_13775#3      TCTTACTTCCTGCAGTGGCCTGCTGGACTGACTGTGTGTGGCTGTGCAGCTGAACGACCG 224
                        *       *       ***  * *    *  * ** * **    **    *  *  *  

consensus_13775#1      CCGCGCCGTCGTCGTCGCTGCCGCCCCC---GTCGTCCGCGGCCCTGCGGAAGTAGATGC 520
consensus_13775#2      CCGCGCCGTCGTCGTCGCTGCCGCCCCC---GTCGTCCGCGGCCCTGCGGAAGTAGATGC 290
consensus_13775#0      CGGTGTCCTCGCCGCCCCCCCCCCCCCCCACATCGTCCGTGGCCCTGTGGAAGTAGATGC 314
consensus_13775#3      ACGTGTGCTGTGTGCTGCTGGTGCTGCT---GTGGCTGAGTGCCCTGCACGAATGCTGCC 281
                         * *   *    *   *     *  *     * *      ******    * *     *

consensus_13775#1      GGCGGGA-GTCCTCCTCGAACGCGACGGCGGTGACGG-CGC--CCGCGCGGAGGCCAGCC 576
consensus_13775#2      GGCGGGA-GTCCTCCTCGAACGCGACGGCGG-GACGG-CGC--CCGCGCGGAGGCCAGCC 345
consensus_13775#0      GGCGGGA-GTCCTCCTCGAACGCGACGGCGGTGACGT-CGC--CCGCGCGGAGGCCAGTC 370
consensus_13775#3      TGCTGGCTGTGCTGTGCGCAGGTTGTGCCTGTGACTTACGCTGCAGTGCAGTGGTT-GCC 340
                        ** **  ** **   ** * *    * * * ***   ***  * * ** * **   * *

consensus_13775#1      AGGAGGTCCGAGTAGGCCACCTCCTTGGCC--GCGTTCTTGGGCAGCGCGAGGCGGGCGG 634
consensus_13775#2      AGGAGGTCCGAGTAG-CCACCTCCGTG-CC--GCGGTCTTGGGCAGCGCGAGCGGCGCGA 401
consensus_13775#0      AAGAGGTCCGAGTAGGCCACCTCCTTGGCT--GCATTCTTGGGCAGCGCGAGGCGGACAG 428
consensus_13775#3      TGCCACTGCATGCAGGTGGTTTCTATGCCTTGGTGTGCTT-------------------- 380
                             * *  * **      **  ** *   *    ***                    

consensus_13775#1      CGAGGAGGAG--ACCGCGAGACAATGG-CGCGACC-GCAAGTATTCCCTTTAGG------ 684
consensus_13775#2      GGAGAGA----------------------------------------------------- 408
consensus_13775#0      CGAGGAGGAGGAACGCCAGGACGATGGGCGCCACCCACCGCCCTTCCCAGTAGTCACATC 488
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      TAGCCTCCTCCCCTCCTCCTGCCATTGATGGATGCTTACCTAATTTGCCGGAAGTGACGA 548
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      CGGACCGGAGCGCGGCGTTCCACAGCGCGTCGACAGGGTAAAACCAGAGGAGGTTGAAGA 608
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      GAAACAAGGTGAGCACGGCGCAGACGAGCCAAGCGGAGACGACTCTATTGAGGAAGCTGC 668
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      AAAGGTTGCTGGTGGTGGTGGTGGTGGTGGTCGCCGGAGTTGGACACGACAGCCGGGTGG 728
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      CGCCGTGGCCCGTGACGCGGTGGCTCGCGCGTGGCCATAGCTAGCGCGTACGACGAGGAC 788
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      GACGAGGTCGTACGACGTCGAACAGGTGAGAGTGGTGACTTCAGATAGTTTGTACATGTA 848
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      GAGAGGAGATGGATGGAGTGTAACTTGGAAAGCACAGCATTATTGCTTAATCGAACATAA 908
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      AGGGGATTAACATCTGGAGTAGAGAGGAAGTGATTAATCTGGCTAATTGAAGTATAGTAA 968
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      ATATTTCGAGTGGCCAAAGTGTCCCTAATGTTTGTGTCAAATCTAATCCACTGACGTTCA 1028
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      AAGTTTGTAGCATTTACATTGTTGACCAAGGGTAAAATTGTCTTTAATGAGTGTTTCTTT 1088
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      ------------------------------------------------------------
consensus_13775#2      ------------------------------------------------------------
consensus_13775#0      TCTCCAATTCCTTCGGAAATAATAAAATAAAGCAACGAGTGTCTGATAGCTAATTCCCAA 1148
consensus_13775#3      ------------------------------------------------------------
                                                                                   

consensus_13775#1      --------------------
consensus_13775#2      --------------------
consensus_13775#0      AAAAAAAAAAAAAAAAAAAA 1168
consensus_13775#3      --------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)