These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [TGCCAGAACGAGGTGAATTGGGAACGAGATGCAGACCAGGGACGGCGAGTGGGTCCTCGTCGAGCCGTCGCCGACGTCGCTCATCGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGCGCCATTTCATCGGATAATGGTGAGCGGGCATGCCACGAGGTACACCTGCATGCTCTTCTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTCGTCGACGAGTGCCACCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGCTTCTGCGTTTCTGAAGAAGGAGCTCGCCACGAGGATAAACTCAAGGCCTTCTGTGGCTTATAGCCTATAGGCAACATCAGAATCTGCAGCTGGTTGATCCCCAATAAGGTGCACTATCAAACAAAGTAACCTGGACATCTTGCACAGGCCAAATAGGATATCGGTTTTGTTGCCTGGCCGTTTTTTTTGTTAACTTTCCGGGGAAAAGGAGGTTTTCCCATTTTTACCCCCCCCCCCCCCCCCGGTTTGGGGGCCGTTTGCCCCCCTTTGTATGTGAACTTTGTTCGGCTATACTTGTACTTCATCGCTCAGGTCAAACAAACACCTTGCTTCCCCAAAA] [+] EMBL BM419136 [TGCCAGAACGAGGTGAATTGGGAACGAGATGCAGACCAGGGACGGCGAGTGGGTCCTCGTCGAGCCGTCGCCGACGTCGCTCATCGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGCGCCATTTCATCGGATAATGGTGAGCGGGCATGCCACGAGGTACACCTGCATGCTCTTCTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTCGTCGACGAGTGCCACCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGCTTCTGCGTTTCTGAAGAAGGAGCTCGCCACGAGGATAAACTCAAGGCCTTCTGTGGCTTATAGCCTATAGGCAACATCAGAATCTGCAGCTGGTTGATCCCCAATAAGGTGCACTATCAAACAAAGTAACCTGGACATCTTGCACAGGCCAAATAGGATATCGGTTTTGTTGCCTGGCCGTTTTTTTTGTTAACTTTCCGGGGAAAAGGAGGTTTTCCCATTTTTACCCCCCCCCCCCCCCCCGGTTTGGGGGCCGTTTGCCCCCCTTTGTATGTGAACTTTGTTCGGCTATACTTGTACTTCATCGCTCAGGTCAAACAAACACCTTGCTTCCCCAAAA] consensusID : consensus_1379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [GGCCAGACAAGGGGGTCCTTGTTGAGCCGTTTCCGAAGTCGCTTATTGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGGGCCATTTTATCGGATAATGGTGAGCGGGCATGCCCCGAGGTACACCTGCATGCTTTTTTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTTGTTGACGAGTGCCCCCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGGTTTTGCGTTTTTGAAAAAGGAGCTCGCCCCGAGGATAAACTCAAGGCCTTTTGTGGGTTATAGCCTATAGGCAACATCAGAATTTGCAGCTGGTTGATCCCCAATAAGGTGCCCTATCAAACAAAATAACCCTGGACATTTTGCACAGGCCAAATAGGAAATCGGTTTTGTGCTGCGTTTTGTACTTCGGGAAGAGTTCATTACCGTGGCGTGCTGTATGTGAACTTTGTTTGGCTATACTTGTACTTTATTGTCAGGTCAAACAAACCCCTTGCTTTCCCAACCATTTTTCAGCATAGCAACAAGCCTTGTTATTAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762073 [GGCCAGACAAGGGGGTCCTTGTTGAGCCGTTTCCGAAGTCGCTTATTGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAACGACCGTCTGCACGGGCCATTTTATCGGATAATGGTGAGCGGGCATGCCCCGAGGTACACCTGCATGCTTTTTTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTTGTTGACGAGTGCCCCCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGGTTTTGCGTTTTTGAAAAAGGAGCTCGCCCCGAGGATAAACTCAAGGCCTTTTGTGGGTTATAGCCTATAGGCAACATCAGAATTTGCAGCTGGTTGATCCCCAATAAGGTGCCCTATCAAACAAAATAACCCTGGACATTTTGCACAGGCCAAATAGGAAATCGGTTTTGTGCTGCGTTTTGTACTTCGGGAAGAGTTCATTACCGTGGCGTGCTGTATGTGAACTTTGTTTGGCTATACTTGTACTTTATTGTCAGGTCAAACAAACCCCTTGCTTTCCCAACCATTTTTCAGCATAGCAACAAGCCTTGTTATTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1379#0 TGCCAGAACGAGGTGAATTGGGAACGAGATGCAGACCAGGGACGGCGAGTGGGTCCTCGT 60 consensus_1379#1 --------------------------------------GGCCAGACAAGGGGGTCCTTGT 22 ** * * ** ******* ** consensus_1379#0 CGAGCCGTCGCCGACGTCGCTCATCGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAA 120 consensus_1379#1 TGAGCCGTTTCCGAAGTCGCTTATTGTCAACGTCGGCAATGCCCTCCGGGCATGGACAAA 82 ******* **** ****** ** *********************************** consensus_1379#0 CGACCGTCTGCACGCGCCATTTCATCGGATAATGGTGAGCGGGCATGCCACGAGGTACAC 180 consensus_1379#1 CGACCGTCTGCACGGGCCATTTTATCGGATAATGGTGAGCGGGCATGCCCCGAGGTACAC 142 ************** ******* ************************** ********** consensus_1379#0 CTGCATGCTCTTCTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTCGTCGACGA 240 consensus_1379#1 CTGCATGCTTTTTTCCTCCCCCAATTTCATGATCCAGGTACCTAACGAGCTTGTTGACGA 202 ********* ** ************************************** ** ***** consensus_1379#0 GTGCCACCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGCTTCTGCGTTTC 300 consensus_1379#1 GTGCCCCCCTCCCCGTTTCAAGACGCATGACAACGACGATTTCATTCGGTTTTGCGTTTT 262 ***** ****************************************** ** ******* consensus_1379#0 TGAAGAAGGAGCTCGCCACGAGGATAAACTCAAGGCCTTCTGTGGCTTATAGCCTATAGG 360 consensus_1379#1 TGAAAAAGGAGCTCGCCCCGAGGATAAACTCAAGGCCTTTTGTGGGTTATAGCCTATAGG 322 **** ************ ********************* ***** ************** consensus_1379#0 CAACATCAGAATCTGCAGCTGGTTGATCCCCAATAAGGTGCACTATCAAACAAAGTAACC 420 consensus_1379#1 CAACATCAGAATTTGCAGCTGGTTGATCCCCAATAAGGTGCCCTATCAAACAAAATAACC 382 ************ **************************** ************ ***** consensus_1379#0 -TGGACATCTTGCACAGGCCAAATAGGATATCGGTTTTGTTGCCTGGCCGTTTTTTTTGT 479 consensus_1379#1 CTGGACATTTTGCACAGGCCAAATAGGAAATCGGTTTTGT-GCTGCGTTTTGTACTTCGG 441 ******* ******************* *********** ** * * * ** * consensus_1379#0 TAA-----CTTTCCGGGGAAAAGGAGGTTTTCCCATTTTTACCCCCCCCCCCCCCCCCGG 534 consensus_1379#1 GAAGAGTTCATTACCGTGGCGTGCTGTATGTGAACTTTGTTTGGCTATACTTGTACTTTA 501 ** * ** * * * * * * * *** * * * * consensus_1379#0 TTTGGGGGCCGTTTGCCCCCCTTTGTATGTGAACTTTGTTCGGCTATACTTGTA--CTTC 592 consensus_1379#1 TTGTCAGGTCAAACAAACCCCTTGCTTTCCCAACCATTTTTCAGCATAGCAACAAGCCTT 561 ** ** * ****** * * *** * ** *** * * * consensus_1379#0 ATCGCTCAGGTCAAACAAACACCTTGCTTCCCCAAAA 629 consensus_1379#1 GTTATTAAAAAAAAAAAAAAAAAAAA----------- 587 * * * *** *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||