These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1960 fasta sequence [CCATAAATCGAGGACACCCACGCTGCCGCTGCCACTGCACACGCACGCAGCGAGTCGCGACACGAGACCGTACCGTGGAAAGAAGAGAGCGAGGCGAGGACACCACTCCGCTCCGCTCCACCGCCGGGTCGCCGCGCCGCGCGCGGC-CCGAGCTCGCCGATCGAGAGCCATGAGCCTCATCCTTTCCCGGCGGCGCCTCGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTCCAGGTGGATGCACACGCCGCCATTCGCGACGGTGTCTCCTCAGGAAATTTCAGGTTCG-AGCCCGGCGG-AAGTGCAGAATTTTGTGCAGGGCAGTTGGAC-AACATCT-GGTAACTGGAATTGGCTAGTTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGGTATCTCATGTATGGAGATATATCTGCCAAAGCTGCAAACATGCTTGGTCAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTATCTCCAAAGAGCTATCAGCAAGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTGGAGAACTTTTGTGGAGATCAGGTACGCTTTCTGGCTCGATCATTTGCTGTACCTGGCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGT-CCGGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAACTAATGGGAGCACTGTATATGGGAAATAAACCTGTCCTCAAAGTTGACAGCAAAGTTAGCATTGTGATGGACCAGATGCTTAGGTTGCTTCACGCATGTGGGATGCCAGCAGAGGATGTGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAGGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAATTGGCTGCTGATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGTTTTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCCCAGAAATATATGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACA-AGGGAGATCTTTGGTCCTTTCCAGGTGGTTACA-GAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGAACGCTCATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAG-CAAGGACAACTGGTGCTCCA-CAGAACCA-CTGGTTTGGGCCTGCTGGTGATCCA-AGAGGTGCA-GGGATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCC-A-CAGGGAGATCATATATGACA-T-TGGCCCCTTGCCTAAGAACCGGGCACTACCTTCCGCTACATAAATA-CTATGTCAAGGCTAGATTAGCTTGTAGCATGTTATTCTGAATAATTTGCCCCGTCTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATAATAAAAAGGCAGGAAATGGTTGTGAAAAAAAAAATGAATAAAAA] [+] EMBL C72049 [CCATAAATCGAGGACACCCACGCTGCCGCTGCCACTGCACACGCACGCAGCGAGTCGCGACACGAGACCGTACCGTGGAAAGAAGAGAGCGAGGCGAGGACACCACTCCGCTCCGCTCCACCGCCGGGTCGCCGCGCCGCGCG GCCNCNGAGCTCGCCGATCGAAAGCCATGAGCCTCATCCTTTCCNGGCGGCGCCTCGCCG CGCCGTCCGGCGGTNAGGCCCCGCNGCGCTCGNTTCCAGGTGGATGCACACGACGCCATTCGCAACGGTNTCTCCTCAGGAAATTTNAGGTTCGAAGCCCGGCGGAAAGTGCAGAATTTTTTGCAGGGCAGTTGGACAAACATCTGGGTAACTG ] [+] EMBL AK121765 [ CCACGCTGCCGCTGCCACTGCACACGCACGCAGCGAGTCGCGACACGAGACCGTACCGTGGAAAGAAGAGAGCGAGGCGAGGACACCACTCCGCTCCGCTCCACCGCCGGGTCGCCGCGCCGCGCGCGGC CCGAGCTCGCCGATCGAGAGTCATGAGCCTCATCCTTTCCCGGCGGCGCCTCGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTCCAGGTGGATGCACACGCCGCCATTCGCGACGGTGTCTCCTCAGGAAATTTCAGGTTCG AGCCCGGCGG AAGTGCAGAATTTTGTGCAGGGCAGTTGGAC AACATCT GGTAACTGGAATTGGCTAGTTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGGTATCTCATGTATGGAGATATATCTGCCAAAGCTGCAAACATGCTTGGTCAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTATCTCCAAAGAGCTATCAGCAAGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTGGAGAACTTTTGTGGAGATCAGGTACGCTTTCTGGCTCGATCATTTGCTGTACCTGGCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGT CCGGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAACTAATGGGAGCACTGTATATGGGAAATAAACCTGTCCTCAAAGTTGACAGCAAAGTTAGCATTGTGATGGACCAGATGCTTAGGTTGCTTCACGCATGTGGGATGCCAGCAGAGGATGTGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAGGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAATTGGCTGCTGATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGTTTTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCCCAGAAATATATGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACA AGGGAGATCTTTGGTCCTTTCCAGGTGGTTACA GAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGAACGCTCATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAG CAAGGACAACTGGTGCTCCA CAGAACCA CTGGTTTGGGCCTGCTGGTGATCCA AGAGGTGCA GGGATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCC A CAGGGAGATCATATATGACA T TGGCCCCTTGCCTAAGAACCGGGCACTACCTTCCGCTACATAAATA CTATGTCAAGGCTAGATTAGCTTGTAGCATGTTATTCTGAATAATTTGCCCCGTCTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATAATAAAAAGGCAGGA ] [+] EMBL CB637962 [ TACCGTGGAAAGAANA AGCGAGGCGAGGACACCACTCCGCTCCGCTCCACCGCCGGGTCGCCGCGCCGCGCGCGGC CCGAGCTCGCCGATCGAGAGCCATGAGCCTCATCCTTTCCCGGCGGCGCCTCTCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTCCAGGTGGATGCACACGCCGCCATTCGCGACGGTGTCTCCTCAGGAAATTTCAGGTTCG AGCCCGGCGG AAGTGCAGAATTTTGTGCAGGGCAGTTGGAC AACATCT GGTAACTGGAATTGGCTAGTTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGGTATCTCATGTATGGAGATATATCTGCCAAAGCTGCAAACATGCTTGGTCAACCTGTGGTTTCAGATTTCTTTG ] [+] EMBL CF322823 [ GCCGATCGAGAGCCATGAGCCTCATCCTTTCCCGGCGGCGCCTCGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTCCAGGTGGATGCACACGCCGCCATTCGCGACGGTGTCTCCTCAGGAAATTTCAGGTTCG AGCCCGGCGG AAGTGCAGAATTTTGTGCAGGGCAGTTGGAC AACATCT GGTAACTGGAATTGGCTAGTTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGGTATCTCATGTATGGAGATATATCTGCCAAAGCTGCAAACATGCTTGGTCAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTATCTCCAAAGAGCTATCAGCAAGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTG ] [+] EMBL CF323731 [ CGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTCCAGGTGGATGCACACGCCGCCATTCGCGACGGTGTCTCCTCAGGAAATTTCAGGTTCG AGCCCGGCGG AAGTGCAGAATTTTGTGCAGGGCAGTTGGAC AACATCT GGTAACTGGAATTGGCTAGTTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGGTATCTCATGTATGGAGATATATCTGCCAAAGCTGCAAACATGCTTGGTCAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTATCTCCAAAGAGCTATCAGCAAGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTGGAGAACTTTTGTGGAGATCAGGTACGCTTTCTGGCTCGATCATTTGCTGTACCTGGCAACCATCTTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCCGGTTGCAATTATCACACCGTTCAATTTCCCATTGGAGATTCCATTACTGCAACTAATGGGAGCACTGTATATGGGAAATAA ] [-] EMBL CB622936 [ AAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCCCAGAAATATATGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACA AGGGAGATCTTTGGTCCTTTCCAGGTGGTTACA GAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGAACGCTCATTTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAG CAAGGACAACTGGTGCTCCA CAGAACCA CTGGTTTGGGCCTGCTGGTGATCCA AGAGGTGCA GGGATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCC A CAGGGAGATCATATATGACA T TGGCCCCTTGCCTAAGAACCGGGCACTACCTTCCGCTACATAAATA CTATGTCAAGGCTAGATTAGCTTGTAGCATGTTATTCTGAATAATTTGCCCCGTCTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATAATAAAAAGGCAGGAAATGGTTG ] [+] EMBL AU101111 [ CANCATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCCCAGAAATATATGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACA AGGGAGATCTTTGGTCCTTTCCAGGTGGTTACA GAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGAACGCTCATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGNATCCGAG CAAGGACAACTGGTGCTCCA CAGAACCA CTGGTTTGGGCCTGCTGGTGATCCA AGAGGTGCA GGGATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCC A CAGGGAGATCATATATGACA T TGGCCCCTTGCCTAAGAACCGGGCACTACCTTCCGCTACATAAATA CTATGTCAAGGCTAGATTAGCTTGTAGCATGTTATTCTGAATAATTTGCCCCGTCTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATAATAAAAAGGCAGGAAATGGTTGTGAAATGTGTTCTGAATAAAAA] [-] EMBL CB637963 [ TTTTGAGCTTGTGACA AGGGAGATCTTTGGTCCTTTCCAGGTGGTTACA GAGTATTTTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGAACGCTCATTTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAG CAAGGACAACTGGTGCTCCA CAGAACCA CTGGTTTGGGCCTGCTGGTGATCCA AAAGGTGCA GGGATCGGAACTCCAGAAGCCATTAAACTTGTTTGGTTTTGCC A CAGGGAGATCATATATGACA T TGGCCCCTTGCCTAAGAACCGGGCACTACCTTCCGGTACATAAATA CTATGTCAAGGCTAGATTAGCTTGTAGCATGTTATTTTGAATAATTTGCCCCGTTTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATAATAAAAAGGCAGGAAA ] [+] EMBL BI804887 [ AGCTTGTGACACAGGGAGATCTTTGGTCCTTTCCAGGTGGTTACACGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGAACGCTCATCTGACGGCT CAGTTGTTTCCAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAGCCAAGGACAACTGGTGCTCCA CAGAACCACCTGGTTTGGGCCTGCTGGTGATCCACAGAGGTGCACGGGATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCC ACCAGGGAGATCATATATGACACT TGGCCCCTTGCCTAAGAACCGGGCACTACCTTCCGCTACATAAATA CTATGTCAAGGCTAGATTAGCTTGTAGCATGTTATTCTGAATAATTTGCCCCGTCTGGGC ATCATGTGTTTCATTAACCCCGAGAGCATAATAAAAAGGCAGGAAATGGTTGTGAAAAAAAAAA ] [+] EMBL BI797071 [ TGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGTACGCTCATTTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAG CAAGGACAACTGGTGCTCCACCAGAACCC CTGGTTTGGGCCTGCTGGTGATCCACAGAGGTGCA GGGATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCCAA CAGGGAGATCATATATGACA TGTGGCCCCTTGCCTAAGAACTGGGCACTACCTTCCGCTACATAAATATCTATGTCAAGGCTAGATTAGCTTGTAGCGTGTTATTCTGAATAATTTGCCCCGTCTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATAAT AAAAGGCAGGAAATGGTTGTGAAAAAAAAAA ] [+] EMBL BE230326 [ ATTAGAAGCCTGTGAAAGGATGAACGCTCATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAG CAAGGACAACTGGTGCTCCA CAGAACCA CTGGTTTGGGCCTGCTGGTGATCCA AGAGGTGCA GGGATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCC A CAGGGAGATCATATATGACA T TGGCCCCTTGCCTAAGAACCGGGCACTACCTTCCGCTACATAAATA CTATGTCAAGGCTAGATTAGCTTGTAGCATGTTATTCTGAATAATTTGCCCCGTCTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATAATAAAAAGGCAGGAAATG ] consensusID : consensus_13791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [ACACGAGACCGTACCGTGGAAGGAAGAGAGCGAGGCGAGGACACCACTCCGCTCCGCTCCACCGTCGGGTCGCCGCGCCGTGCGCGGCCCGAGCTCGCCGATCGAGAGCCATGAGCCTCATCCTTTCCCGGCGGCGCCTCGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTCCAGGTGGTTGCACACGCCGCCATTCGTGACGGTGTCTCCTCAGGAGATTTCAGGTTCGAGCCCGGCGGAAGTTCAGAATTTTGTGCAGGGCAGCTGGACAACATGTGGTAACTGGAATTGGCTAGTTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCACGAAGCAGAAATTAAGCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGGTATCTCATGTATGGAGATATATCTGCCAAAGCTGCAAACATGCTTGGACAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTATCTTCAAAGAGCTATCAGCAGGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTGGAGAACTTCTGTGGAGATCAGGTACGCTTTCTGGCTCGATCATTTGCTGTACCTGGCAACCATTTTTTACAAAGCAGTAATGGTTACCGGTGGCCATATGGTCCGGTTGGAATTATTACACCCGGTCATTTTCCCATTGAAGATCCATTACTGGAACTAATGGGAGCCCTGTTTATGGGGAATAAACCTGTCCTAAAGGTGCCGGAAAGTTTGTATTGTGGTGGAACCAGAGGCTTAGGTGCTTCACACATTTGGGATGCCGCAGACGGAGTGGCCTTCATCAATTTGGTGGGTTAACAATGACCAACGGTGGTGGAGGCAAAATTGGAATGGACCCTTTAACTGGGAGCTACGGATTGGAAGAAAT] [+] EMBL BE040067 [ACACGAGACCGTACCGTGGAAGGAAGAGAGCGAGGCGAGGACACCACTCCGCTCCGCTCCACCGTCGGGTCGCCGCGCCGTGCGCGGCCCGAGCTCGCCGATCGAGAGCCATGAGCCTCATCCTTTCCCGGCGGCGCCTCGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTCCAGGTGGTTGCACACGCCGCCATTCGTGACGGTGTCTCCTCAGGAGATTTCAGGTTCGAGCCCGGCGGAAGTTCAGAATTTTGTGCAGGGCAGCTGGACAACATGTGGTAACTGGAATTGGCTAGTTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCACGAAGCAGAAATTAAGCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGGTATCTCATGTATGGAGATATATCTGCCAAAGCTGCAAACATGCTTGGACAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTATCTTCAAAGAGCTATCAGCAGGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTGGAGAACTTCTGTGGAGATCAGGTACGCTTTCTGGCTCGATCATTTGCTGTACCTGGCAACCATTTTTTACAAAGCAGTAATGGTTACCGGTGGCCATATGGTCCGGTTGGAATTATTACACCCGGTCATTTTCCCATTGAAGATCCATTACTGGAACTAATGGGAGCCCTGTTTATGGGGAATAAACCTGTCCTAAAGGTGCCGGAAAGTTTGTATTGTGGTGGAACCAGAGGCTTAGGTGCTTCACACATTTGGGATGCCGCAGACGGAGTGGCCTTCATCAATTTGGTGGGTTAACAATGACCAACGGTGGTGGAGGCAAAATTGGAATGGACCCTTTAACTGGGAGCTACGGATTGGAAGAAAT] consensusID : consensus_13791#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [ATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGTTTTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCCCAGAAATATATGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTATTATTAGCAGCCTGTGAAAAGATGAACGCTCATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAATTACTTGGGCGATCCATTAACCGGGACAACTATCCTCCCATTCGAACAAGGACACTGCTGCTCACAGAACCACTGGTTGGGCCTCCTGGTATTCAAAGTTCAGGATCTGACTTCCAAACCATAACCCTTTGGTGTGCCACGGAAATATATTTAATTGGCCCTTCCATAACACGGCACCCATCCCCCTCTTTTTAAGCNTANTANNATCNNTATTTATTTTCCCT] [+] EMBL CA753328 [ATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGTTTTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTGTTACAACATCAAGCATGATAGAGCACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTGGAGAACCATTCTATCCCAGAAATATATGGTGCCTTCAAACCAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCTTTCCAGGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTATTATTAGCAGCCTGTGAAAAGATGAACGCTCATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAATTACTTGGGCGATCCATTAACCGGGACAACTATCCTCCCATTCGAACAAGGACACTGCTGCTCACAGAACCACTGGTTGGGCCTCCTGGTATTCAAAGTTCAGGATCTGACTTCCAAACCATAACCCTTTGGTGTGCCACGGAAATATATTTAATTGGCCCTTCCATAACACGGCACCCATCCCCCTCTTTTTAAGCNTANTANNATCNNTATTTATTTTCCCT] consensusID : consensus_13791#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CGAGGCAAGCTGCTGTTAGAGGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAATTGGCTGCTGATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGTTTTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGGTAATAGTGAAGATTAGTATTATGTTCCTTCTTTGCTTGAGTCTTTGACTGTGATCATGACTCTTGACATATAACTTATGTTACATGCTTCTTTTTTATCTTGATGGTTTGAGCCATTTACTTATGGACAAGGTTATTTATGACTACAGTAGTAACTTATCCAATGATCAACACTAGGTTTAAGACCGACTGTCTTATAATATCGATCCTACTGATTTCAAGACAATAGGTCCAGTGCTCCTGAGAAAAGGAAAATACAATTTGTCTTTCTTTTTTATTTGAGCTTTGGAAGCTAGTTGAGCTTGTGTTACTTTTCATATCTTAATCTGTTGTTTAATTTTCTTAACTTGCAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTTACTGTACAACATCAAG] [+] EMBL CF326743 [CGAGGCAAGCTGCTGTTAGAGGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAATTGGCTGCTGATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGTTTTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGGTAATAGTGAAGATTAGTATTATGTTCCTTCTTTGCTTGAGTCTTTGACTGTGATCATGACTCTTGACATATAACTTATGTTACATGCTTCTTTTTTATCTTGATGGTTTGAGCCATTTACTTATGGACAAGGTTATTTATGACTACAGTAGTAACTTATCCAATGATCAACACTAGGTTTAAGACCGACTGTCTTATAATATCGATCCTACTGATTTCAAGACAATAGGTCCAGTGCTCCTGAGAAAAGGAAAATACAATTTGTCTTTCTTTTTTATTTGAGCTTTGGAAGCTAGTTGAGCTTGTGTTACTTTTCATATCTTAATCTGTTGTTTAATTTTCTTAACTTGCAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTTACTGTACAACATCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13791#0 CCATAAATCGAGGACACCCACGCTGCCGCTGCCACTGCACACGCACGCAGCGAGTCGCGA 60 consensus_13791#1 -----------------------------------------------------------A 1 consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 CACGAGACCGTACCGTGGAAAGAAGAGAGCGAGGCGAGGACACCACTCCGCTCCGCTCCA 120 consensus_13791#1 CACGAGACCGTACCGTGGAAGGAAGAGAGCGAGGCGAGGACACCACTCCGCTCCGCTCCA 61 consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ---CGAGGCAAGCTGCTGTTAGAGGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCA 57 consensus_13791#0 CCGCCGGGTCGCCGCGCCGCGCGCGGCCCGAGCTCGCCGATCGAGAGCCATGAGCCTCAT 180 consensus_13791#1 CCGTCGGGTCGCCGCGCCGTGCGCGGCCCGAGCTCGCCGATCGAGAGCCATGAGCCTCAT 121 consensus_13791#2 -------------------------ATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGT 35 consensus_13791#3 CGGATAGCAGAGAAATTGGCTGCTGATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGT 117 ** *** * * ** ** * consensus_13791#0 CCTTTCCCGGCGGCGCCTCGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTC 240 consensus_13791#1 CCTTTCCCGGCGGCGCCTCGCCGCCGCCGTCCGGCGGTCAGGCCCCGCCGCGCTCGCCTC 181 consensus_13791#2 T-TTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTG 94 consensus_13791#3 T-TTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTG 176 ** * ** ** * * * ** * * * * ** * * consensus_13791#0 CAGGT-GGATGCACACGCCGCCATTCGC--GACGGTGTCTCCTCAGGAAATTTCAGGTTC 297 consensus_13791#1 CAGGT-GGTTGCACACGCCGCCATTCGT--GACGGTGTCTCCTCAGGAGATTTCAGGTTC 238 consensus_13791#2 CGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTA--TTC 152 consensus_13791#3 CGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTA--TTC 234 * ** *** * ** ** * * ** * *** ***** *** * *** consensus_13791#0 GAGCCCGGCGGAAGTGCAGAATTTTGTGCAGGGCAGTTGGACAACATCTGG----TAACT 353 consensus_13791#1 GAGCCCGGCGGAAGTTCAGAATTTTGTGCAGGGCAGCTGGACAACATGTGG----TAACT 294 consensus_13791#2 ATGC---ACAAGAATTGGTCGTCTAGTG---GGCTTCTTGATAAAATGAAAAGTCTTTCT 206 consensus_13791#3 ATGCACAAGGTAATAGTGAAGATTAGTATTATGTTCCTTCTTTGCTTGAGTC-TTTGACT 293 ** * * ** * * * * ** consensus_13791#0 GGAATTGGCTAG-TTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAG 412 consensus_13791#1 GGAATTGGCTAG-TTGATCCTTTAAATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAC 353 consensus_13791#2 GAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTGTTACAA-----CAT 261 consensus_13791#3 GTGATCATGACTCTTGA-CATATAACTTATGTTACATGCTTCTTTTTTATCTTGATGGTT 352 * * **** * * ** * * ** consensus_13791#0 GAAGCAGAAATAAAGCCATTTGTAGAGAGTT-TATCTAATTGCCCAAAGCATGGACTTCA 471 consensus_13791#1 GAAGCAGAAATTAAGCCATTTGTAGAGAGTT-TATCTAATTGCCCAAAGCATGGACTTCA 412 consensus_13791#2 CAAGCATGA--TAGAGCACATG-AAAAACCT-TCTCAAAATACCAGGATCAAAGGTCCTG 317 consensus_13791#3 TGAGC--CATTTA---CTTATGGACAAGGTTATTTATGACTACAGTAGTAACTTATCCAA 407 *** * * * ** * * * * * * * * * consensus_13791#0 CAACCCACTTAAAGCTCCAGAG-AGGTATCTCATGTATGGAGATATATCTGCCAAAGCTG 530 consensus_13791#1 CAACCCACTTAAAGCTCCAGAG-AGGTATCTCATGTATGGAGATATATCTGCCAAAGCTG 471 consensus_13791#2 TTTGGTGGT-GAACCTCTGGAG-AACCATTCTAT-CCCAGAAATATATGGTGC----CTT 370 consensus_13791#3 TGATCAACACTAGGTTTAAGACCGACTGTCTTAT-AATATCGATCCTACTGATTTCAAGA 466 * * ** * ** ** consensus_13791#0 CAAACATGCTTGGTCAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTAT 590 consensus_13791#1 CAAACATGCTTGGACAACCTGTGGTTTCAGATTTCTTTGCTAAACTTATCCAGAGGGTAT 531 consensus_13791#2 CAAAC---------CAACTGCTGTATTTGTTCCTCTATCGGAAATCCTTAAAAGTGGCAA 421 consensus_13791#3 CAATAGGTCCAGTGCTCCTGAGAAAAGGAAAATACAATTTGTCTTTCTTTTTTATTTGAG 526 *** * * * * * * consensus_13791#0 CTCCAAAGAGCTATCAGCAAGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTGGAGA 650 consensus_13791#1 CTTCAAAGAGCTATCAGCAGGCTCTTGCAGAAGTTCAAGTCTCTCAAAAATTCTTGGAGA 591 consensus_13791#2 TTTT---GAGCTTGTGACAAG-----GGAGATCTTTG-GTCCTTTCCAGGTGGTTACAGA 472 consensus_13791#3 CTTTGG-AAGCTAGT--TGAGCTTGTGTTACTTTTCATATCTT----AATCTGTTGTTTA 579 * **** * * ** ** * ** * consensus_13791#0 ACTTTTGTGGAGATCAGGTACGCTTTCTGGCTCGATCATTTGCTGTACCTGGCAACCATC 710 consensus_13791#1 ACTTCTGTGGAGATCAGGTACGCTTTCTGGCTCGATCATTTGCTGTACCTGGCAACCATT 651 consensus_13791#2 G-TATTCTGATGATGAGCTTGAATTATTA--TTAGCAGCCTGTGAAAA--GATGAACGCT 527 consensus_13791#3 ATTTTCTTAACTTGCAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAAT---GAAAAGTC 636 * * ** * * ** * * consensus_13791#0 TTGGACAAAGCAGTAATGGTTACCGTTGGCCATATGGTCCGGTTGCAATTATCACACC-G 769 consensus_13791#1 TTTTACAAAGCAGTAATGGTTACCGGTGGCCATATGGTCCGGTTGGAATTATTACACCCG 711 consensus_13791#2 CATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAATTACTTGGGCGA 587 consensus_13791#3 TTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCT--TTACTGTACAAC 694 * * * * * * * ** * *** consensus_13791#0 TTCAATTTCCCATTGGAG-ATTCCATTACTGCAACTAATGGGAGCACTGTATATGGGAAA 828 consensus_13791#1 GTCATTTTCCCATTGAAG-AT-CCATTACTGGAACTAATGGGAGCCCTGTTTATGGGGAA 769 consensus_13791#2 TCCATTAACCGGGACAACTATCCTCCCATTCGAAC-AAGGACACTGCTGCTCACAG---- 642 consensus_13791#3 ATCAAG------------------------------------------------------ 700 ** consensus_13791#0 TAAACCTGTCCTCAAAGTTGACAGCAAAGTTAGCATTGTGATGGA-CCAGATGCTTAGGT 887 consensus_13791#1 TAAACCTGTCCTAAAGGT--GCCGGAAAGTTTGTATTGTGGTGGAACCAGAGGCTTAGGT 827 consensus_13791#2 --AACCACTGGTTGGGCC--TCCTGGTATTCAAAGTT----CAGGATCTGACTTCCAAAC 694 consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 TGCTTCACGCATGTGGGATGCCA-GCAGAGGATGTGGACTTCATAAATTCTGATGGTATC 946 consensus_13791#1 -GCTTCACACATTTGGGATGCC--GCAGACGGAGTGGCCTTCATCAATT-TGGTGGGTTA 883 consensus_13791#2 --CATAACCC-TTTGGTGTGCCACGGAAATATATTTAATTGGCCCTTCCATAACACGGCA 751 consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 ACGATGAACAAGCTGCTGTTAGAGGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCA 1006 consensus_13791#1 ACAATGACCAA--CGGTGGTGGAGGCAAAATTGGAATGGACCCT-TTAACTGGGAGCT-A 939 consensus_13791#2 CCCATCCCCCTCTTTTTAAGCNTANTANNATCNNTATTTATTTTCCCT------------ 799 consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 CGGATAGCAGAGAAATTGGCTGCTGATTTGAAAGGCAAAATCAAATTGGAAGATGCTGGT 1066 consensus_13791#1 CGGATTGGA-AGAAAT-------------------------------------------- 954 consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 TTTGACTGGAAAATTCTTGGTCCAGATGTTCAAGAGGTTGATTACATTGCATGGGTTTGC 1126 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 GACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATG 1186 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 CACAAGAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGG 1246 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 AAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACTGTTACAACATCAAGCATGATAGAG 1306 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 CACATGAAAAACCTTCTCAAAATACCAGGATCAAAGGTCCTGTTTGGTGGTGAACCTCTG 1366 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 GAGAACCATTCTATCCCAGAAATATATGGTGCCTTCAAACCAACTGCTGTATTTGTTCCT 1426 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 CTATCGGAAATCCTTAAAAGTGGCAATTTTGAGCTTGTGACAAGGGAGATCTTTGGTCCT 1486 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 TTCCAGGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAA 1546 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 AGGATGAACGCTCATCTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAA 1606 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 GTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAGCAAGGACAACTGGT 1666 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 GCTCCACAGAACCACTGGTTTGGGCCTGCTGGTGATCCAAGAGGTGCAGGGATCGGAACT 1726 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 CCAGAAGCCATTAAACTCGTTTGGTCTTGCCACAGGGAGATCATATATGACATTGGCCCC 1786 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 TTGCCTAAGAACCGGGCACTACCTTCCGCTACATAAATACTATGTCAAGGCTAGATTAGC 1846 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 TTGTAGCATGTTATTCTGAATAATTTGCCCCGTCTGGGCAATCATGTGTTTCATTAACCC 1906 consensus_13791#1 ------------------------------------------------------------ consensus_13791#2 ------------------------------------------------------------ consensus_13791#3 ------------------------------------------------------------ consensus_13791#0 CGAGAGCATAATAAAAAGGCAGGAAATGGTTGTGAAAAAAAAAATGAATAAAAA 1960 consensus_13791#1 ------------------------------------------------------ consensus_13791#2 ------------------------------------------------------ consensus_13791#3 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||