These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1413 fasta sequence [ACCCGACATTCCCTCGTGCTCTTCCCATCCGCGACTCCAAAATTCCCGTCCGCTCCTCCAGGCAAGCAAGCACGGAAACCCACTCATCACTCACTCACTCCCCCAAACCCAAACCCTAGCTACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA-CTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCAAATGAGTTTGGTTCAATAGCTAACTTTTAAAATAATCAGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK071369 [ACCCGACATTCCCTCGTGCTCTTCCCATCCGCGACTCCAAAATTCCCGTCCGCTCCTCCAGGCAAGCAAGCACGGAAACCCACTCATCACTCACTCACTCCCCCAAACCCAAACCCTAGCTACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTCCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA CTAGTGTCCTGATTG ] [+] EMBL OSR28261A [ CTCACTCACTCCCCCAAACCCAAACCCTAGCTACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGNCGAACAGTGGCATTGTGCCGCCACGGTNCACCAGCGATGTCATCGTA ] [+] EMBL CA765509 [ agnAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGNTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAA ] [-] EMBL CB964811 [ TATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTAC ACTGTAAACTTGCTTTCAATTTANCTAGTGTCCTGATTGCCT ] [-] EMBL CB966348 [ TATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA CTAGTGTCCTGATTGCCT ] [-] EMBL CB966568 [ TATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACCCAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCANTTTA CTAGTGTCCTGATTGCCT ] [-] EMBL CF308644 [ ATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA CTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCAAATGAGTTTGGTTCAATAGCTAACTTTTAAAATAATCAGAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [GGTAATGTGGTGGATGAGAGGAAGTGAAGGTGTNNTATGTCCAACCACCCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATTTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCCGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGGATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTAAAAAAAAAAAAAA] [-] EMBL CA763549 [GGTAATGTGGTGGATGAGAGGAAGTGAAGGTGTNNTATGTCCAACCACCCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATTTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCCGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGGATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTAAAAAAAAAAAAAA] consensusID : consensus_13795#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence [AGAGGACGAGACAAGGGGGAATCTTGAATTATCAAGATGTGAGATGTCTGATTATGCATTGTTTCATTCCCTTGTTTTTCTTTAATTCGTGTGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATTGCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATATGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTGTGTTTCGTTAGGCCTTTTCTTTTTTAAGAAATGATTTGTGGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTTAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759548 [AGAGGACGAGACAAGGGGGAATCTTGAATTATCAAGATGTGAGATGTCTGATTATGCATTGTTTCATTCCCTTGTTTTTCTTTAATTCGTGTGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATTGCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATATGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTGTGTTTCGTTAGGCCTTTTCTTTTTTAAGAAATGATTTGTGGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTTAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759550 [AGAGGACGAGACAAGGGGGAATCTTGAATTATCAAGATGTGAGATGTCTGATTATGCATTGTTTCATTCCCTTGTTTTTCTTTAATTCGTGTGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATTGCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATATGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTGTGTTTCGTTAGGCCTTTTCTTTTTTAAGAAATGATTTGTGGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13795#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [GACGAGCCAAGGGGGATCTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCGAAAAAAAAAAA] [-] EMBL CA759549 [GACGAGCCAAGGGGGATCTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCGAAAAAAAAAAA] consensusID : consensus_13795#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [GTAGAAATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTGTACGGTTTCCTCGCCGGAAATTCCCTGCTTGTGAAATTCCGGAGCCTCATGCCGCTGGGGTTTTGTTTGTTTTTGCTGATTCTTTTGCTGTTTGGATTGAGCAGTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCA] [+] EMBL CF308645 [GTAGAAATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTGTACGGTTTCCTCGCCGGAAATTCCCTGCTTGTGAAATTCCGGAGCCTCATGCCGCTGGGGTTTTGTTTGTTTTTGCTGATTCTTTTGCTGTTTGGATTGAGCAGTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCA] consensusID : consensus_13795#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [TTGGCCCGAGGCAGAATCTACTGGGGTATATCATGAAGAGATAGATGAGCTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTGGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATGGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTGGCGCATCGGTATCTGTGGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATGGCC] [+] EMBL BU673862 [TTGGCCCGAGGCAGAATCTACTGGGGTATATCATGAAGAGATAGATGAGCTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTGGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATGGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTGGCGCATCGGTATCTGTGGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATGGCC] consensusID : consensus_13795#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TTTTCTTTCTTAAGATTGGATTTGTTGTCTGCATTTTCTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU070187 [TTTTCTTTCTTAAGATTGGATTTGTTGTCTGCATTTTCTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 ACCCGACATTCCCTCGTGCTCTTCCCATCCGCGACTCCAAAATTCCCGTCCGCTCCTCCA 60 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 GGCAAGCAAGCACGGAAACCCACTCATCACTCACTCACTCCCCCAAACCCAAACCCTAGC 120 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 TACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCT 180 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 TCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGAT 240 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 CGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCA 300 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 GCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAA 360 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 GTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGT 420 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 AACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGT 480 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 GCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAA 540 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ----------GGTAATGTGGTGGATGAGAGGAAGTGAAGGTGTNNTATGTCCAACCACCC 50 consensus_13795#2 --------------------------AGAGGACGAGACAAGGGGGAATCTTGAATTATCA 34 consensus_13795#0 CAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACC 600 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATT 110 consensus_13795#2 AGATGTGAGATGTCTGAT-TATGCATTGTTTCATTC--CCTTGTTTTTCTTTAATTCGTG 91 consensus_13795#0 ACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATT 660 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 ------------------------------------------------------------ consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATT 170 consensus_13795#2 --TGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATT 149 consensus_13795#0 ATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATT 720 consensus_13795#4 -----------------------------GTAGAAATCTCGAGTTCGAGCGAGCATTCCC 31 consensus_13795#3 ----------------------------------------------------GACGAGCC 8 consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 GCTATTTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATC 230 consensus_13795#2 GCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATA 209 consensus_13795#0 GCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATC 780 consensus_13795#4 CTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCG 91 consensus_13795#3 AAGGGGGATCTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCT 68 consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 CGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGAACAATAAGCT 290 consensus_13795#2 TGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCT 269 consensus_13795#0 TGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCT 840 consensus_13795#4 GGATCGAGCCGCTCGAGCTCCGGTTCTCCTGTACGGTTTCCTCGCCGGAAATTCCCTGCT 151 consensus_13795#3 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTT 128 consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTT 350 consensus_13795#2 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTT 329 consensus_13795#0 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTT 900 consensus_13795#4 TGTGAAATTCCGGAGCCTCATGCCGCTGGGGTTTTGTTTGTTTT-TGCTGATTCTTTTGC 210 consensus_13795#3 TGTGTTCGT--GGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 186 consensus_13795#5 -------------------TTGGCCCGAGGCAGAATCTACTGGGGTATATCATGAAGAGA 41 consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 TGTGTTCGT--GGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 408 consensus_13795#2 TGTGTTCGT--GGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 387 consensus_13795#0 TGTGTTCGT--GGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 958 consensus_13795#4 TGTTTGGATTGAGCAGTCGAGACGAAGAAGCAGATCTCA-TGCTCCATGCAGCTGACGAA 269 consensus_13795#3 TAGATGAGCTTGTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGAATTGATTTG 244 consensus_13795#5 TAGATGAGCT-GTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGAATTGATTTG 98 consensus_13795#6 ------------------------------------TTTTCTTTCTTAAGATTGGATTTG 24 consensus_13795#1 TAGATGAGCTTGTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGGATTGATTTG 466 consensus_13795#2 TAGATGAGCTTGTCTAGTTGTGTTTC--GTTAGGCCTTTTCTTTTTTAAGAAATGATTTG 445 consensus_13795#0 TAGATGAGCTTGTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGAATTGATTTG 1016 consensus_13795#4 CAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCA-AAGAAGTACTGCG 328 * *** * * consensus_13795#3 TT-GTCTGCATTTT-TTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAG 302 consensus_13795#5 TT-GTCTGCATTTT-CTGATGCGTTGGCTCACATGTTCTACACTACCGCAGTCCGCATAG 156 consensus_13795#6 TT-GTCTGCATTTTCTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAG 83 consensus_13795#1 TT-GTCTGCATTTT-TTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAG 524 consensus_13795#2 TG-GTCTGCATTTT-TTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAG 503 consensus_13795#0 TT-GTCTGCATTTT-CTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAG 1074 consensus_13795#4 TCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTA-ACAATG 387 * * * * * * ** * * * * * * ** ** * consensus_13795#3 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 357 consensus_13795#5 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATGGGCTGG 211 consensus_13795#6 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 138 consensus_13795#1 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 579 consensus_13795#2 CAAATTCATCCTAGGAT-----CTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGG 558 consensus_13795#0 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 1129 consensus_13795#4 CAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGT--GCAGA 445 *** ** * * * * ** * ** * * ** * ** * consensus_13795#3 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 417 consensus_13795#5 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 271 consensus_13795#6 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 198 consensus_13795#1 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 639 consensus_13795#2 CTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCT 618 consensus_13795#0 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 1189 consensus_13795#4 GCGTTGTG-GTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAA 504 * * * ** * * * ** * ** consensus_13795#3 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACT 477 consensus_13795#5 TGGAGAGCTTATGCAGTTAAGAAGTTGGCGCATCGGTATCTGTGGGTACAACTGTAAACT 331 consensus_13795#6 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAAAA 258 consensus_13795#1 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTAAAAAAAAAAAAAA--------- 690 consensus_13795#2 TGGAGAGCTTATGCAGTTTAAAAA-------------AAAAAAAAAAAAAA--------- 656 consensus_13795#0 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACT 1249 consensus_13795#4 GGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCA--- 561 * ** * *** ** * * ** consensus_13795#3 TGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGC 537 consensus_13795#5 TGCTTTCAATTTACTAGTGTCCTGATGGCC------------------------------ 361 consensus_13795#6 AAAAAAAAAAAAAAA--------------------------------------------- 273 consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 TGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGC 1309 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 AAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCGAAAAAAAAAAA------- 590 consensus_13795#5 ------------------------------------------------------------ consensus_13795#6 ------------------------------------------------------------ consensus_13795#1 ------------------------------------------------------------ consensus_13795#2 ------------------------------------------------------------ consensus_13795#0 AAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCAAATGAGTTTGGTTCAATA 1369 consensus_13795#4 ------------------------------------------------------------ consensus_13795#3 -------------------------------------------- consensus_13795#5 -------------------------------------------- consensus_13795#6 -------------------------------------------- consensus_13795#1 -------------------------------------------- consensus_13795#2 -------------------------------------------- consensus_13795#0 GCTAACTTTTAAAATAATCAGAAAAAAAAAAAAAAAAAAAAAAA 1413 consensus_13795#4 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||