These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [TGATGCTAAGTCCCAGTTGGAAGCCGTGTGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGCATCTTTTTCCGGTACCGGCTCTACAACTTCACGGCGACGGGGAACGCGGACCCGACGATCAGCCCGTCGGCGCTGCCGCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCGTGGCGCTGGACCTGGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGGACGGCGGCGCCGTGCTGGAGTCCGACCAGCGGCTGTGGGGCGACGCCGCGACGCAGGCCGCCGTGCAGAGCTTCGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGGTTCAGCTACGAGTTCCCCAAGGCCATGGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGATCAGGAGGAAGTGCTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGTGATCGATCGAGTCACCTGTCCTGAATGATATTGATATATGTACACATGCTG] [+] EMBL AK058554 [TGATGCTAAGTCCCAGTTGGAAGCCGTGTGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGCATCTTTTTCCGGTACCGGCTCTACAACTTCACGGCGACGGGGAACGCGGACCCGACGATCAGCCCGTCGGCGCTGCCGCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCGTGGCGCTGGACCTGGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGGACGGCGGCGCCGTGCTGGAGTCCGACCAGCGGCTGTGGGGCGACGCCGCGACGCAGGCCGCCGTGCAGAGCTTCGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGGTTCAGCTACGAGTTCCCCAAGGCCATGGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGATCAGGAGGAAGTGCTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGTGATCGATCGAGTCACCTGTCCTGAATGATATTGATATATGTACACATGCTG] consensusID : consensus_138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCAGGCTTGCTCAGGCTACATTTCCATGACTGTTTTGTTCAAGGATGTGATGCGTCAGTTTTGATTTCAGGTGCATCCTCTGACTGGACTGCACCACAGAATTTTGGTATCAGGGGGTTTGAAGTGATAGATGATGCTAAGTCCCAGTTGGAAGCCGTATGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGTATCTTTTTTCGGTACCCGGTCTACAACTTTACGGCGACGGTGAACGCGGTCCCCGACCGATCATTTCGTTGGCGCTGCCGCATTTGCGGTCGTTGTGCCTCTCCCATGGTTACCGTTTCTCGTGCGTGGTGCTGCACCTGTGTCTTCCGTGGTCGTTTTCTTTTACTTCTTTATTATCTTTTTGTCCGTCGTTCTTTGTTTCAATTTCTTTTTTTCGTTTTTGGGTTCAATTTATTCACTTATTCTCCTGTTTTACATTATCCCTCGCCCTTCTTTT] [+] EMBL BE041104 [CCAGGCTTGCTCAGGCTACATTTCCATGACTGTTTTGTTCAAGGATGTGATGCGTCAGTTTTGATTTCAGGTGCATCCTCTGACTGGACTGCACCACAGAATTTTGGTATCAGGGGGTTTGAAGTGATAGATGATGCTAAGTCCCAGTTGGAAGCCGTATGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGTATCTTTTTTCGGTACCCGGTCTACAACTTTACGGCGACGGTGAACGCGGTCCCCGACCGATCATTTCGTTGGCGCTGCCGCATTTGCGGTCGTTGTGCCTCTCCCATGGTTACCGTTTCTCGTGCGTGGTGCTGCACCTGTGTCTTCCGTGGTCGTTTTCTTTTACTTCTTTATTATCTTTTTGTCCGTCGTTCTTTGTTTCAATTTCTTTTTTTCGTTTTTGGGTTCAATTTATTCACTTATTCTCCTGTTTTACATTATCCCTCGCCCTTCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_138#0 ------------------------------------------------------------ consensus_138#1 CCAGGCTTGCTCAGGCTACATTTCCATGACTGTTTTGTTCAAGGATGTGATGCGTCAGTT 60 consensus_138#0 ------------------------------------------------------------ consensus_138#1 TTGATTTCAGGTGCATCCTCTGACTGGACTGCACCACAGAATTTTGGTATCAGGGGGTTT 120 consensus_138#0 -----------TGATGCTAAGTCCCAGTTGGAAGCCGTGTGCTCCGGGGTGGTATCCTGT 49 consensus_138#1 GAAGTGATAGATGATGCTAAGTCCCAGTTGGAAGCCGTATGCTCCGGGGTGGTATCCTGT 180 *************************** ********************* consensus_138#0 GCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGG 109 consensus_138#1 GCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGG 240 ************************************************************ consensus_138#0 TCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTG 169 consensus_138#1 TCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTG 300 ************************************************************ consensus_138#0 CCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACG 229 consensus_138#1 CCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACG 360 ************************************************************ consensus_138#0 GACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGCATCTTT 289 consensus_138#1 GACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGTATCTTT 420 ***************************************************** ****** consensus_138#0 TTCCGGTACCGGCTCTACAACTTCACGGCGACGGGGAACGCGGACCCGA--CGATCAGCC 347 consensus_138#1 TTTCGGTACCCGGTCTACAACTTTACGGCGACGGTGAACGCGGTCCCCGACCGATCATTT 480 ** ******* * ********** ********** ******** *** ****** consensus_138#0 CGTCGGCGCTGCCGCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCG 407 consensus_138#1 CGTTGGCGCTGCCGCATTTGCGGTCGTTGTGCCTCTCCCATGGTTACCGTTTCTCGTGCG 540 *** ************ ***** ** ****** ** ** ** * * * * *** consensus_138#0 TGGCGCTGGACCTGGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGG 467 consensus_138#1 TGGTGCTGCACCTGTGTCTTCCGTGGTCGTTTT-CTTTTACTTCTTTATTATCTTTTTGT 599 *** **** ***** * *** ** **** * * ****** * * * * * consensus_138#0 ACGGCGGCGCCGTGCTGGAGTCCGACCAGCGGCTGTGGGGCGACGCCGCGACGCAGGCCG 527 consensus_138#1 CCGTCGTTCTTTGTTTCAATTTCTTTTTTTCGTTTTTGGGTTCAATTTATTCACTTATTC 659 ** ** * * * * * * * *** * * consensus_138#0 CCGTGCAGAGCTTCGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGGTTCAGCTACGAGT 587 consensus_138#1 TCCTGTTTTACATTATC-----CCTCGCCCTTCTTTT----------------------- 691 * ** * * * * ** ** ** consensus_138#0 TCCCCAAGGCCATGGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGA 647 consensus_138#1 ------------------------------------------------------------ consensus_138#0 TCAGGAGGAAGTGCTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGT 707 consensus_138#1 ------------------------------------------------------------ consensus_138#0 GATCGATCGAGTCACCTGTCCTGAATGATATTGATATATGTACACATGCTG 758 consensus_138#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||