These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2711 fasta sequence [TTATTTTTTCCTCTCAAAAGATCACAATTTTTTCATCTTCTTCTCGTGATATCCTTTGTTTTTTTTCATCCATCCATCCATTCCCCTTTGCACGGTTGAGCTCGTCTCACAGTTGTTAATTAACAGCAAGAACATTTT-TTTCCTTAAATTTCTATTTAATTTATACTACTTGCGAGCGAGAGCCACCTAATCTTGGTGCCCACCAAGCATAAGCTTCATCATCTTCTTCTTCTTTGAAG-TCGTCTTCTTCCCTCCTCCTCTCGTCGCCTCTTGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGATCGAGTTGCAGCAATGGCGAGGAGGGCGCCATGGCTCGCCGGGATTGGGGCCGTGCCGTTCTTGATCGTCGTCGTGGTGGCGGTGGTGGGCGCCGCCGTGCCGGCGATGGGGAGGTTCGTGGTGGAGAAGAGCAGCGTGAGGGTGCTCTCGCCGGAGCACATCCGGGGGCACCACGACGCCGCCATCGGCAACTTCAGCGTGCCGGACTACGGCGGCACGCTCACCGGCGTCGTCGTCTACCCCGACAAGAAGGCCACCGGCTGCGCCGAGTTCGACGCCAAGTTCAAGTCCAAGTCTCGCCGCCCGGTCATCCTCCTGCTCGACCGTGGAGAGTGCTACTTCGCGCTGAAGGCGTGGAACGCGCAGCAGGCGGGCGCGGCGGCGGGGCTGATCGCGGACAACGTGGACGAGCAGCTGCTGACGATGGACACGCCGGAGGAGTCGCCGGAGACGGAGTACATCGACCGGATCAGCATCCCGTCCGCGCTGGTCAACCGCGCGTTCGGCGAGTCCCTCAAGAGGATGTCGTCGCCGTCGCCGTCGTCAGAGGCGGCGGTGGAGGTGGTGGTGAAGCTGGACTGGCGCGAGTCGATGCCCCACCCCGACGAGCGGGTGGAGTACGAGCTGTGGACCAACAGCAACGACGAGTGCGGCGCCCGGTGCGACGAGCAGATGGAGTTCGTCCGCGGCTTCCGCGGCCACGCCCAGATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGAGGCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACCATGGCAGGTATTGTGCGCCGGACCCGGAGCAGGATTTCGGGGAGGGGTACGAGGGGAAGGACGTGGTGGTGGAGAACCTGAGGCAGCTGTGCGTGCACCGGGTGGCCAACGAGACCGGGCGGCCATGGGCGTGGTGGGACTACGTCATGGACTACAAGATCAGGTGCTCCATGAAGGAGAAGAAGTACAGCAAGGGCTGCGCCGAGGACGTCGTCAAGGCCCTAGGTCTGTCGCTTGACAAGGTGCTGGAATGTATGGGCGATCCAGAGGCCGACACCGACAACGCCGTCTTGGCCAAAGAGCAGGAAGATCAGATTGGCCGTGGGTCGCGAGGGGATGTGACCATCTTGCCTACTCTCGTCATCAACAACGTCCAGTACAGAGGGAAACTGGAGAGGACGGCCGTGCTGAAAGCTGTCTGTGCCGGCTTCAAGGAGGGCACTGAACCTCGCGTCTGCTTGAGCAATGATATCGAGACGAACGAGTGCCTGCACAGGAACGGCGGTTGCTGGAGAGACGAGAAAACCAACGTTACGGCTTGCAAGGACACGTTCAGGGGTAGGGTGTGCGAGTGCCCAGTGGTGAATGGCGTCCAGTACGAGGGCGACGGGTACATCGGTTGCAAAGCTGTTGGGCCAGGCAGGTGTACGGTGGACAACGGAGGCTGCTGGTCAGAGACTAGGGGTCATCAGACGTTCTCTGCTTGCTCTGACACTGCATTGACTGGATGCCGATGCCCCCCGGGTTTCCAAGGAGATGGCCACAAATGTGAAGATTTGGATGAATGCAAGGAGAAGCTTGCGTGCACTTGCCCTAACTGCCACTGCAAGAACACCTGGGGCAACTACGAGTGCAAGTGCAAGGGCAACCAGATCTACATAAGAGGAGAGGACACATGCATAGCCAACAGCATGTCAAGGTTCGGCTGGTTCATCACTATATTGGTGGCGTCGTGCGTAGCCGGCGTGGGGATTGCCGGCTATGTGTTCTAC-AAGTACAGACTCAGGTCGTACA-TGGACTCGGAG-ATCATGGCCATCA-TGTCCCAGTACA-TG-CCGCTTGACA-GCCAGAACAA-CG-AGAACCAACCCC-TTCGAC-AGCA-TGA-TTCA-GAGGCTTAAGGGA-CCTGG-CCACTTTGAT-GGAGAA-TTTGGTTAGCTATATA-CCTTGTGAAGAGATTGATAC-CAAGATGGGCTATGAGTT-CAAGGGAACTAGTTATGGTGATCCCAGACCATACTCAGCAGATACTTAAGTGTGCTTCCAATGATT-TTAGCTTCA-TTTTTGTATAGTAAAAGAAATGGTTTGTACCGAGCCA-CA-GTGATTGAGCCATAGAGAAGTAGCTA-GGTAGGCA-TTTCTGCTCTCATGTGGAA-CGACA-TACAATAC-ATACA-CA-CAGAATTTTTAGAAAAGAAAAATA-CACGGTGGCAGTGTATCATAGTCATAGATAACCATATTAAGAAAAATATGGATGGCGGTGTATCAAAAACCATAAAATAAGGTGTTTCTGTCTAAAAAAAAAAATTTTGGCATGCTTTCCTGAAAACACCAGGCTCTTGTTTTCAGAAATCCNTGATAAGAGAGTTGATCCAAAAAAA] [+] EMBL AK100655 [TTATTTTTTCCTCTCAAAAGATCACAATTTTTTCATCTTCTTCTCGTGATATCCTTTGTTTTTTTTCATCCATCCATCCATTCCCCTTTGCACGGTTGAGCTCGTCTCACAGTTGTTAATTAACAGCAAGAACATTTT TTTCCTTAAATTTCTATTTAATTTATACTACTTGCGAGCGAGAGCCACCTAATCTTGGTGCCCACCAAGCATAAGCTTCATCATCTTCTTCTTCTTTGAAG TCGTCTTCTTCCCTCCTCCTCTCGTCGCCTCTTGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGATCGAGTTGCAGCAATGGCGAGGAGGGCGCCATGGCTCGCCGGGATTGGGGCCGTGCCGTTCTTGATCGTCGTCGTGGTGGCGGTGGTGGGCGCCGCCGTGCCGGCGATGGGGAGGTTCGTGGTGGAGAAGAGCAGCGTGAGGGTGCTCTCGCCGGAGCACATCCGGGGGCACCACGACGCCGCCATCGGCAACTTCAGCGTGCCGGACTACGGCGGCACGCTCACCGGCGTCGTCGTCTACCCCGACAAGAAGGCCACCGGCTGCGCCGAGTTCGACGCCAAGTTCAAGTCCAAGTCTCGCCGCCCGGTCATCCTCCTGCTCGACCGTGGAGAGTGCTACTTCGCGCTGAAGGCGTGGAACGCGCAGCAGGCGGGCGCGGCGGCGGGGCTGATCGCGGACAACGTGGACGAGCAGCTGCTGACGATGGACACGCCGGAGGAGTCGCCGGAGACGGAGTACATCGACCGGATCAGCATCCCGTCCGCGCTGGTCAACCGCGCGTTCGGCGAGTCCCTCAAGAGGATGTCGTCGCCGTCGCCGTCGTCAGAGGCGGCGGTGGAGGTGGTGGTGAAGCTGGACTGGCGCGAGTCGATGCCCCACCCCGACGAGCGGGTGGAGTACGAGCTGTGGACCAACAGCAACGACGAGTGCGGCGCCCGGTGCGACGAGCAGATGGAGTTCGTCCGCGGCTTCCGCGGCCACGCCCAGATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGAGGCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACCATGGCAGGTATTGTGCGCCGGACCCGGAGCAGGATTTCGGGGAGGGGTACGAGGGGAAGGACGTGGTGGTGGAGAACCTGAGGCAGCTGTGCGTGCACCGGGTGGCCAACGAGACCGGGCGGCCATGGGCGTGGTGGGACTACGTCATGGACTACAAGATCAGGTGCTCCATGAAGGAGAAGAAGTACAGCAAGGGCTGCGCCGAGGACGTCGTCAAGGCCCTAGGTCTGTCGCTTGACAAGGTGCTGGAATGTATGGGCGATCCAGAGGCCGACACCGACAACGCCGTCTTGGCCAAAGAGCAGGAAGATCAGATTGGCCGTGGGTCGCGAGGGGATGTGACCATCTTGCCTACTCTCGTCATCAACAACGTCCAGTACAGAGGGAAACTGGAGAGGACGGCCGTGCTGAAAGCTGTCTGTGCCGGCTTCAAGGAGGGCACTGAACCTCGCGTCTGCTTGAGCAATGATATCGAGACGAACGAGTGCCTGCACAGGAACGGCGGTTGCTGGAGAGACGAGAAAACCAACGTTACGGCTTGCAAGGACACGTTCAGGGGTAGGGTGTGCGAGTGCTCAGTGGTGAATGGCGTCCAGTACGAGGGCGACGGGTACATCGGTTGCAAAGCTGTTGGGCCAGGCAGGTGTACGGTGGACAACGGAGGCTGCTGGTCAGAGACTAGGGGTCATCAGACGTTCTCTGCTTGCTCTGACACTGCATTGACTGGATGCCGATGCCCCCCGGGTTTCCAAGGAGATGGCCACAAATGTGAAGATTTGGATGAATGCAAGGAGAAGCTTGCGTGCACTTGCCCTAACTGCCACTGCAAGAACACCTGGGGCAACTACGAGTGCAAGTGCAAGGGCAACCAGATCTACATAAGAGGAGAGGACACATGCATAGCCAACAGCATGTCAAGGTTCGGCTGGTTCATCACTATATTGGTGGCGTCGTGCGTAGCCGGCGTGGGGATTGCCGGCTATGTGTTCTAC AAGTACAGACTCAGGTCGTACA TGGACTCGGAG ATCATGGCCATCA TGTCCCAGTACA TG CCGCTTGACA GCCAGAACAA CG AGAACCAACCCC TTCGAC AGCA TGA TTCA GA ] [+] EMBL CB669391 [ AGAACATTTTCTTTCCTTAAATTTCTATTTAATTTATACTACTTGCGAGCGAGAGCCACCTAATCTTGGTGCCCACCAAGCATAAGCTTCATCATCTTCTTCTTCTTTGAAGATCGTCTTCTTCCCTCCGCCTCTCGTCGCCTCTTGGAAAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGGTGATCCAATTGCAGCAATGGCGAGGAGGGCGCCATGGCTCGCCGGGATTGGGGCCGTGCCGGTCTTGATCCTCCTCGTGGTGGCGGTGGCGGGCGCCGCCGTGCCAGAAATGGGGAGGTTCGTGGTGGACAACAGCAACGTGAGGGTGCTCTCGCCGGAGCACATCCGGGGGCACCACGACGCCGCCATCGGCAACTTCTGCG ] [+] EMBL CB645588 [ AGTGCCTTGCCCGGGGCGACGAGCAGATGGAGTTCGTCCGCGGCTTCCGCGGCCACGCCCAGATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGAGGCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACCATGGCAGGTATTGTGCGCCGGACCCGGAGCAGGATTTCGGGGAGGGGTACGAGGGGAAGGACGTGGTGGTGGAGAACCTGAGGCAGCTGTGCGTGCACCGGGTGGCCAACGAGACCGGGCGGCCATGGGCGTGGTGGGACTACGTCATGGACTACAAGATCAGGTGCTCCATGAAGGAGAAGAAGTACAGCAAGGGCTGCGCCGAGGACGTCGTCAAGGCCCTAGGTCTGTCGCTTGACAAGGTGCTGGAATGTATGGGCGATCCAGAGGCCGACACCGACAACGCCGTCTTGGCCAAAGAGCAGGAAGATCAGATTGGCCGTGGATCGCGAGGGGATGTGACCATCTTGCCTACTCTCGTCATCAACAACGTCCAGTACAGAGGGAAACTGGACAGGACGGCCGTGCTGAAAGCTGTCTGTGCCGGCTTCAAGGAGGGCACTGAACCTCGCGTCTGCTTGAGCAATGATATCGAGACGAACGAGTGCCTGCACAGGAACGGCGGTTGCTGGAGAGACGA ] [+] EMBL CB681609 [ GCCTCCTCTCGTCATCAACAACGTCCAGTACAGAGGGAAACTGGAGAGGACGGCCGTGCTGAAAGCTGTCTGTGCCGGCTTCAAGGAGGGCACTGAACCTCGCGTCTGCTTGAGCAATGATATCGAGACGAACGAGTGCCTGCACAGGAACGGCGGTTGCTGGAGAGACGAGAAAACCAACGTTACGGCTTGCAAGGACACGTTCAGGGGTAGGGTGTGCGAGTGCCCAGTGGTGAATGGCGTCCAGTACGAGGGCGACGGGTACATCGGTTGCAAAGCTGTTGGGCCAGGCAGGTGTACGGTGGACAACGGAGGCTGCTGGTCAGAGACTAGGGGTCATCAGACGTTCTCTGCTTGCTCTGACACTGCATTGACTGGATGCCGATGCCCCCCGGGTTTCCAAGGAGATGGCCACAAATGTGAAGATTTGGATGAATGCAAGGAGAAGCTTGCGTGCACTTGCCCTAACTGCCACTGCAAGAACACCTGGGGCAACTACGAGTGCAAGTGCAAGGGCAACCAGATCTACATAAGAGGAGAGGACACATGCATAGCCAACAGCATGTCAAGGTTCGGCTGGTTCATCACTATATTGGTGGCGTCGTGCGTAGCCGGCGTGGGGATTGCCGGCTATGTGTTCTAC AAGTACAGACTCAGGTCGTACA TGGACTCGGAG ATCATGGCCATCA TGTCCCAGTACA TG CCGCTTGACA GCCAGAACAA CG AGAACCAACCCC TTCGAC AGCA TGA TTCA GA ] [+] EMBL BE230053 [ GAAAACCAACGTTACGGCTTGCAAGGACACGTTCAGGGGTAGGGTGTGCGAGTGCCCAGTGGTGAATGGCGTCCAGTACGAGGGCGACGGGTACATCGGTTGCAAAGCTGTTGGGCCAGGCAGGTGTACGGTGGACAACGGAGGCTGCTGGTCAGAGACTAGGGGTCATCAGACGTTCTCTGCTTGCTCTGACACTGCATTGACTGGATGCCGATGCCCCCCGGGTTTCCAAGGAGATGGCCACAAATGTGAAGATTTGGATGAATGCAAGGAGAAGCTTGCGTGCACTTGCCCTAACTGCCACTGCAAGAACACCTGGGGCAACTACGAGTGCAAGTGCAAGGGCAACCAGATCTACATAAGAGGAGAGGACACATGCATAGCCAACAGCATGTCAAGGTTCGGCTGGTTCATCACTATATTGGTGGCGTCGTGCGTAGCCGGCGTGGGGATTGCCGGCTATGTGTTCTACAAAGTACAGACTCAGGTCGTACATTGGACTCGGAGAATCATGGCCATCATTGTCCCAGTACATTGCCCGCTTGACAGGCCAGAACAA CGAAGAACCAACCCCTTTCGACAAGCA TGATTTCA AAGGCTTAAGGGACCCTGGCCCATTTTGATGGGAGAATTTTGGGTAGCTttt ] [-] EMBL CB669392 [ AAGCTGTTGGGCCAGGCAGGTGTACGGTGGACAACGGAGGCTGCTGGTCAGAGACTAGGGGTCATCAGACGTTCTCTGCTTGCTCTGACACTGCATTGACTGGATGCCGATGCCCCCCGGGTTTCCAAGGAGATGGCCACAAATGTGAAGATTTGGATGAATGCAAGGAGAAGCTTGCGTGCACTTGCCCTAACTGCCACTGCAAGAACACCTGGGGCAACTACGAGTGCAAGTGCAAGGGCAACCAGATCTACATAAGAGGAGAGGACACATGCATAGCCAACAGCATGTCAAGGTTCGGCTGGTTCATCACTATATTGGTGGCGTCGTGCGTAGCCGGCGTGGGGATTGCCGGCTATGTGTTCTAC AAGTACAGACTCAGGTCGTACA TGGACTCGGAG ATCATGGCCATCA TGTCCCAGTACA TG CCGCTTGACA GCCAGAACAA CG AGAACCAACCCC TTCGAC AGCA TGA TTCA GAG ] [+] EMBL BI812670 [ CGTACA TGGACTCGGAG ATCAT GCCATCA TGTCCCAGTACA T CCGCTTGACA GCCAG AC A CG AGAACCAACCCC TTCGAC AGCA TGA TTCA GAGGCTTAAGGGA CCTGG CCACTTTGAT GGAGAA TTTGGTTAGCTATATA CCTTGTGAAGAGATTGATAC CAAGATGGGCTATGAGTT CAAGGGAACTAGTTATGGTGATCCCAGACCATACTCAGCAGATACTTAAGTGTGCTTCCAATGATT TTAGCTTCA TTTTTGTATAGTAAAAGAAATGGTTTGTACCGAGCCA CA GTGATTGA CCATAGAGAAGTAGCTA GGTAGGCA TTTCTGCTCTCATGTGGAA CGACA TACAATAC ATACA CC CAGAATTTTTAGAAAAGAAAAATA C CGGTGGCAGTGTATCATAGTCATAGATAACCATATTAAGAAAAATATGGATGGCGGTGTATCCAAAACCATAAAATAAGGTGTTTCTGTCTAAAAAAAAAA ] [+] EMBL BM419360 [ ACA TGGACTCGGAG ATCATGGCCATCA TGTCCCAGTACA TG CCGCTTGACA GCCAGAACAACCG AGAACCAACCCC TTCGAC AGCACTGA TTCACGAGGCTTAAGGGA CCTGG CCACTTTGAT GGAGAA TTTGGTTAGCTATATACCCTTGTGAAGAGATTGATACACAAGATGGGCTATGAGTTCCAAGGGAACTAGTTATGGTGATCCCAGACCATACTCAGCAGATACTTAAGTGTGCTTCCAATGATT TTAGCTTCACTTTTTGTATAGTAAAAGAAATGGTTTGTACCGAGCCACCACGTGATTGAG CATAGAGAAGTAGCTACGGTAGCCACTTTCTGCTCTCATGTGGAACCGACACTACAATACAATACACCACCAGAATTTTTAGAAAAGAAAAATACCACGGTGGCAGTGTATCATAGTCATAGATAACCATATTAAGAAAAATATGGATGCCGGTGTATCAAAAACCATAAAATACNNCCTTTCTGTCTCAAAAAAAAAA ] [+] EMBL BM420064 [ CGGAG ATCATGCCCATCA TGTCCCAGTACA T CCGCTTGACA GCCAGAAC A CG AGAACCAACCCC TTCGAC AGCA TGA TTCA GAGGCTTAAGGGA CCT G CC CTTTGAT GGAGAA TTTGGTTAGCTATATA CCTTGTGAAGAGATTGATAC CAAGATGGGCTATGAGTT CAAGGGAACTAGTTATGGTGATCCCAGACCATACTCAGCAGATACTTAAGTGTGCTTCCCATGATT TTAGCTTCA TTTTTGTATAGTAAAAGAAATGGTTTGTACCGAGCCC CA GTGATTGAGCCATAGAGAAGTAGCTA GGTAGGCACTTTCTGCTCTCATGTGGAA CGACA TACAATAC ATACA CA CAGAATTTTTAGAAAAGAAAAATA CACGGTGCCAGTGTATCATAGTCATAGATAACCATATTAAGAAAAATATGGATGGCGGTGTATCCAAAACCATAAAATAAGGTGTTTCTGTCTAAAAAAAAAA ] [+] EMBL BM421298 [ TCATGGCCATCA TGTCCCAGTACA TG CCGCTTGACA GCCAGAAC A CG AGAACCAACCCC TTCGAC AGCA TGA TTCA GAGGCTTAAGGGA CCTGG CCACTTTGAT GGAGAA TTTGGTTAGCTATATA CCTTGTGAAGAGATTGATAC CAAGATGGGCTATGAGTT CAAGGGAACTAGTTATGGTGATCCCAGACCATACTCAGCAGATACTTAAGTGTGCTTCCAATGATTNTTAGCTTCA TTTTTGTATAGTAAAAGAAATGGTTTGTACCGAGCCA CA GTGATTGAGCAATAGAGAAGTAGCTA GGTAGGCA TTTCTGCTCTCATGTGGAA CGACA TACAATACAATACA CA CAGAATTTTTAGAAAAGAAAAATA CACGGTGGCAGTGTATCATAGTCATAGATAACCATATTAAGAAAAATATGGATGGCGGTGTATCAAAAACCATAAAATAAGGTGTTTCTGTCTATTTGGAGTTGTTTTGGCATGCTTTCCTGAAAACACCAGGCTCTTGTTTTCAGAAATCCNTGATAAGAGAGTTGATCCAAAAAAA] [+] EMBL BM418745 [ TAGCTATATA CCTTGTGAAGAGATTGATAC AAAGATGGGCTATGAGTT CAAGGGAACTAGTTATGGTGATCCCAGACCATACTCAGCAGATACTTAAGTGTGCTTCCAATGATT TTAGCTTCA TTTTTGTATAGTAAAAGAAATGGTTTGTACCGAGCCACCA GTGATTGAGCAATAGAGAAGTAGCTA GGTAGGCA TTTCTGCTCTCATGTGGAA CGACA TACAATACAATACA CA CAGAATTTTTAGAAAAGAAAAATA CA GGTGGCAGTGTATCATAGTCATAGATAACCATATTAAGAAAAATATGGATGGCGGTGTATCAAAAACCATAAAATAAGGTGTTTCTGTCAAAAAAAAAA ] consensusID : consensus_13818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence [ATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGA-GCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATC-AACCATGGCAGGCAAGTGACTTCCTTCGTTTCAGATTATAAATCGTTTCGATTTCTTTTTTTTTAATCATACTTCCTTCATTTTATATTATTATTAAGTCGTTTTCACTTTTCTTATATCCGAACTTAAATTTGATTAAGTTTATTAGAAAAATTAGTAACACTCTACACACCACCCACAATTGGTTTCACCTAAAACCTCACACCACTTTTTAATGTTATATTTTGATAATATTTTTCTTTTGTGTCGTAAATGTTGCTAAGTTTTCTATAAATTTGGTTAAACTTAGACTACTTATAATATGAAGTACCTCTTTTTAAAAAAATATTGGACGTTGTTACTTTTTTTTACAAACTTTTGATCATTCATTTTATTCAAAAAAAAAA] [+] EMBL BI812167 [ATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGA GCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATC AACCATGGCAGGCAAGTGACTTCCTTCGTTTCAGATTATAAATCGTTTCGATTTCTTTTTTTTTAATCATACTTCCTTCATTTTATATTATTATTAAGTCGTTTTCACTTTTCTTATATCCGAACTTAAATTTGATTAAGTTTATTAGAAAAATTAGTAACACTCTACACACCACCCACAATTGGTTTCACCTAAAACCTCACACCACTTTTTAATGTTATATTTTGATAATATTTTTCTTTTGTGTCGTAAATGTTGCTAAGTTTTCTATAAATTTGGTTAAACTTAGACTACTTATAATATGAAGTACCTCTTTTTAAAAAAATATTGGACGTTGTTACTTTTTTTTACAAACTTTTGATCATTCATTTTATTCAAAAAAAAAA] [+] EMBL BI812166 [ ATGGAGAGAGGT GCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGAGGCCTTCAAGCTCACCCA CAGTGCAAGTCCCAGTGCATCAAACCAT GCAGGCAAGTGACTTCCTTCGTTTCAGATTATAAATCTTTTCGATTTCTTTTTTTTTAATCATACTTCCTTCATTTTATATTATTATTAAGTCGTTTTCACTTTTCTTATATCCGAACTTAAATTTGATTAAGTTTA TAGAAAAATTAGTAACA TCTACA A CA CCACAATTGGTTTCA CTAAAA CTCACA TTT ATG TATA TTGATAATATTTTTCTTTTGT TCGTAAATGTTGCTAAGTTTTCTATAAATTTGGTTAAACTTAGACTACTTATAATATGAAGTACCTCTTTTTAAAAAAATATTGGACGTTGTTACTTTTTTTTAC AACTTTTGATCACTCATTTTATTCAAAAAAAAAA] consensusID : consensus_13818#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [TTTTTGTATAGTAAAAAGAAAATTGGTTTTGTACCGACCACAGTGATTGGACCATAGAGAAGTAGCTAGTAGCCATTTCTGCTCTCATGTGGAACGACATACAATCAATACACACAGAATTTTTAGAAAAGAAAAATACACGGTGCAGTGTATCATAGTCATAGATACACCATATTAAGAAAAATATGGATGCGGTGTATCAAAAACCATAAAATAAGGTGTTTCTGTCTATTTGGAGTTGTTTTGCCATGCTTTCCTGAAAACACCCAGGCTCTTGTTTTCAGAAATCCATGATAAGAGAGTTGATCACTTGCTGGTTTTCTTGTGGGCTATGATATCGCCGACGCCAAGTATCTAATAAAAGATTCTTGATCCAGGCCATGTGGAGTGATCATAAAACCTTCTTCTTCACACAAAAAAAA] [+] EMBL BI812729 [TTTTTGTATAGTAAAAAGAAAATTGGTTTTGTACCGACCACAGTGATTGGACCATAGAGAAGTAGCTAGTAGCCATTTCTGCTCTCATGTGGAACGACATACAATCAATACACACAGAATTTTTAGAAAAGAAAAATACACGGTGCAGTGTATCATAGTCATAGATACACCATATTAAGAAAAATATGGATGCGGTGTATCAAAAACCATAAAATAAGGTGTTTCTGTCTATTTGGAGTTGTTTTGCCATGCTTTCCTGAAAACACCCAGGCTCTTGTTTTCAGAAATCCATGATAAGAGAGTTGATCACTTGCTGGTTTTCTTGTGGGCTATGATATCGCCGACGCCAAGTATCTAATAAAAGATTCTTGATCCAGGCCATGTGGAGTGATCATAAAACCTTCTTCTTCACACAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13818#0 TTATTTTTTCCTCTCAAAAGATCACAATTTTTTCATCTTCTTCTCGTGATATCCTTTGTT 60 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TTTTTTCATCCATCCATCCATTCCCCTTTGCACGGTTGAGCTCGTCTCACAGTTGTTAAT 120 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TAACAGCAAGAACATTTTTTTCCTTAAATTTCTATTTAATTTATACTACTTGCGAGCGAG 180 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 AGCCACCTAATCTTGGTGCCCACCAAGCATAAGCTTCATCATCTTCTTCTTCTTTGAAGT 240 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 CGTCTTCTTCCCTCCTCCTCTCGTCGCCTCTTGGAAAGAGAGAGAGAGAGAGAGAGAGAG 300 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 AGAGAGAGAGAGGTGATCGAGTTGCAGCAATGGCGAGGAGGGCGCCATGGCTCGCCGGGA 360 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TTGGGGCCGTGCCGTTCTTGATCGTCGTCGTGGTGGCGGTGGTGGGCGCCGCCGTGCCGG 420 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 CGATGGGGAGGTTCGTGGTGGAGAAGAGCAGCGTGAGGGTGCTCTCGCCGGAGCACATCC 480 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GGGGGCACCACGACGCCGCCATCGGCAACTTCAGCGTGCCGGACTACGGCGGCACGCTCA 540 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 CCGGCGTCGTCGTCTACCCCGACAAGAAGGCCACCGGCTGCGCCGAGTTCGACGCCAAGT 600 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TCAAGTCCAAGTCTCGCCGCCCGGTCATCCTCCTGCTCGACCGTGGAGAGTGCTACTTCG 660 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 CGCTGAAGGCGTGGAACGCGCAGCAGGCGGGCGCGGCGGCGGGGCTGATCGCGGACAACG 720 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TGGACGAGCAGCTGCTGACGATGGACACGCCGGAGGAGTCGCCGGAGACGGAGTACATCG 780 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 ACCGGATCAGCATCCCGTCCGCGCTGGTCAACCGCGCGTTCGGCGAGTCCCTCAAGAGGA 840 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TGTCGTCGCCGTCGCCGTCGTCAGAGGCGGCGGTGGAGGTGGTGGTGAAGCTGGACTGGC 900 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GCGAGTCGATGCCCCACCCCGACGAGCGGGTGGAGTACGAGCTGTGGACCAACAGCAACG 960 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 ACGAGTGCGGCGCCCGGTGCGACGAGCAGATGGAGTTCGTCCGCGGCTTCCGCGGCCACG 1020 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 CCCAGATCATGGAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACT 1080 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GCCCCGAGGCCTTCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACCATGGCAGGT 1140 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 ATTGTGCGCCGGACCCGGAGCAGGATTTCGGGGAGGGGTACGAGGGGAAGGACGTGGTGG 1200 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TGGAGAACCTGAGGCAGCTGTGCGTGCACCGGGTGGCCAACGAGACCGGGCGGCCATGGG 1260 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 CGTGGTGGGACTACGTCATGGACTACAAGATCAGGTGCTCCATGAAGGAGAAGAAGTACA 1320 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GCAAGGGCTGCGCCGAGGACGTCGTCAAGGCCCTAGGTCTGTCGCTTGACAAGGTGCTGG 1380 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 AATGTATGGGCGATCCAGAGGCCGACACCGACAACGCCGTCTTGGCCAAAGAGCAGGAAG 1440 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 ATCAGATTGGCCGTGGGTCGCGAGGGGATGTGACCATCTTGCCTACTCTCGTCATCAACA 1500 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 ACGTCCAGTACAGAGGGAAACTGGAGAGGACGGCCGTGCTGAAAGCTGTCTGTGCCGGCT 1560 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TCAAGGAGGGCACTGAACCTCGCGTCTGCTTGAGCAATGATATCGAGACGAACGAGTGCC 1620 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TGCACAGGAACGGCGGTTGCTGGAGAGACGAGAAAACCAACGTTACGGCTTGCAAGGACA 1680 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 CGTTCAGGGGTAGGGTGTGCGAGTGCCCAGTGGTGAATGGCGTCCAGTACGAGGGCGACG 1740 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GGTACATCGGTTGCAAAGCTGTTGGGCCAGGCAGGTGTACGGTGGACAACGGAGGCTGCT 1800 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GGTCAGAGACTAGGGGTCATCAGACGTTCTCTGCTTGCTCTGACACTGCATTGACTGGAT 1860 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GCCGATGCCCCCCGGGTTTCCAAGGAGATGGCCACAAATGTGAAGATTTGGATGAATGCA 1920 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 AGGAGAAGCTTGCGTGCACTTGCCCTAACTGCCACTGCAAGAACACCTGGGGCAACTACG 1980 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 AGTGCAAGTGCAAGGGCAACCAGATCTACATAAGAGGAGAGGACACATGCATAGCCAACA 2040 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GCATGTCAAGGTTCGGCTGGTTCATCACTATATTGGTGGCGTCGTGCGTAGCCGGCGTGG 2100 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 GGATTGCCGGCTATGTGTTCTACAAGTACAGACTCAGGTCGTACATGGACTCGGAGATCA 2160 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 TGGCCATCATGTCCCAGTACATGCCGCTTGACAGCCAGAACAACGAGAACCAACCCCTTC 2220 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 ------------------------------------------------------ATCATG 6 consensus_13818#0 GACAGCATGATTCAGAGGCTTAAGGGACCTGGCCACTTTGATGGAGAATTTGGTTAGCTA 2280 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 GAGAGAGGTGGCTACGCCCTCTTCACCCCGCACTACATCACCTGGTACTGCCCCGAGCCT 66 consensus_13818#0 TATACCTTGTGAAGAGATTGATACCAAGATGGGCTATGAGTTCAAGGGAACTAGTTATGG 2340 consensus_13818#2 ------------------------------------------------------------ consensus_13818#1 TCAAGCTCACCCAGCAGTGCAAGTCCCAGTGCATCAACCATGGCAGGCAAGTGACTTCCT 126 consensus_13818#0 TGATCCCAGACCATACTCAGCAGATACTTAAGTGTGCTTCCAATGATTTTAGCTTCATTT 2400 consensus_13818#2 ---------------------------------------------------------TTT 3 consensus_13818#1 TCGTTTCAGATTATAAATCGTTTCGATTTC--TTTTTTTTTAATCATACTTCCTTCATTT 184 *** consensus_13818#0 TTGTATAGTAAAAGAAA--------TGGTTT-GTA-CCGAGCCACAGT--GATTGAGCCA 2448 consensus_13818#2 TTGTATAGTAAAAAGAAA-----ATTGGTTTTGTA-CCGA-CCACAGT--GATTGGACCA 54 consensus_13818#1 TATATTATTATTAAGTCGTTTTCACTTTTCTTATATCCGAACTTAAATTTGATTAAGTT- 243 * ** ** * * * * ** **** * * * **** consensus_13818#0 TAGAGAAGTAGCTAGGTAGGCATTTCTGCTCTCATGTGGAACGACATACAATACATACAC 2508 consensus_13818#2 TAGAGAAGTAGCTAG-TAGCCATTTCTGCTCTCATGTGGAACGACATACAATCAATACAC 113 consensus_13818#1 TATTAGAAAAATTAG-TAACACTCTACACACCACCCACAATTGGTTTCACCTAAAACCTC 302 ** * * *** ** * * * * * * * * * * * consensus_13818#0 ACAGAATTTTTAGAAAAGAAAAATACACGGTGGCAGTGTATCATAGTCATAGATA-ACCA 2567 consensus_13818#2 ACAGAATTTTTAGAAAAGAAAAATACACGGTG-CAGTGTATCATAGTCATAGATACACCA 172 consensus_13818#1 ACACCACTTTTTAATGTTATATTTTGATAATATTTTTCTTTTGT-GTCGTAAATG----T 357 *** * **** * * * * * * * * * * *** ** ** consensus_13818#0 TATTAAGAAAAATATGGATGGCGGTGTATCAAAAAC---CATAAAATAAGGTGTTTCTGT 2624 consensus_13818#2 TATTAAGAAAAATATGGATG-CGGTGTATCAAAAAC---CATAAAATAAGGTGTTTCTGT 228 consensus_13818#1 TGCTAAGTTTTCTATAAATTTGGTTAAACTTAGACTACTTATAATATGAAGTACCTCTTT 417 * **** *** ** * * * * * **** ** * ** *** * consensus_13818#0 CTAAAAAAAAA---AATTTTGGCATGCTTTCCTGAAAACACC-AGGCTCTTGTTTTCAGA 2680 consensus_13818#2 CTATTTGGAGT---TGTTTTGCCATGCTTTCCTGAAAACACCCAGGCTCTTGTTTTCAGA 285 consensus_13818#1 TTAAAAAAATATTGGACGTTGTTACTTTTTTTTACAAACTTTTGATCATTCATTTT---- 473 ** * *** * *** * **** * * **** consensus_13818#0 AATCCNTGATAAGAGAGTTGATCCAAAAAAA----------------------------- 2711 consensus_13818#2 AATCCATGATAAGAGAGTTGATCACTTGCTGGTTTTCTTGTGGGCTATGATATCGCCGAC 345 consensus_13818#1 -ATTCAAAAAAAAAA--------------------------------------------- 487 ** * * ** * consensus_13818#0 ------------------------------------------------------------ consensus_13818#2 GCCAAGTATCTAATAAAAGATTCTTGATCCAGGCCATGTGGAGTGATCATAAAACCTTCT 405 consensus_13818#1 ------------------------------------------------------------ consensus_13818#0 ----------------- consensus_13818#2 TCTTCACACAAAAAAAA 422 consensus_13818#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||