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Oryza sativa
cluster # 13820 cluster # 13820       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13820#0 length = 1425 sequences # 12  
consensus_13820#1 length = 268 sequences # 1  
consensus_13820#2 length = 210 sequences # 1  

consensusID : consensus_13820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1425
fasta sequence
                              [GTTTCCCTTTCCCATATAAATCCCCCCCGCGTCCGCTGCGAACTACTAAACCGAGAGAGAGAGGCGCACACACGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAACGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCGTGCTGGTGACGGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGGAGAAGGGGTTCGCGGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCGTCCGCCTCATCGCCGGCGCCGCCCTCTCCGCCCGCCTCGACTTCATCGCCGGGGATCTCAAGAGCAAGGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCGTGATCCACTTCGCCGGGCTGAAGGCGGTGGGGGAGAGCGTCGCGCACCCGCAGATGTACTACGAGAACAACGTCGCCGGCACCATGAACCTCTACTCCGCCATGACCAAGTACGGCTGCAAGAAGATAGTGTTCTCGTCGTCGGCGACGGTG-TACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCTGAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGTGCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCG-CCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCAGGGACGGCACCGCGAT-CAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT-C-CATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAGGTTTATTTAAATACTATACTAGTAGCAAGATCAAAAAGAACAATAAA]

[+] EMBL AK073610             [GTTTCCCTTTCCCATATAAATCCCCCCCGCGTCCGCTGCGAACTACTAAACCGAGAGAGAGAGGCGCACACACGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAACGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCGTGCTGGTGACGGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGGAGAAGGGGTTCGCGGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCGTCCGCCTCATCGCCGGCGCCGCCCTCTCCGCCCGCCTCGACTTCATCGCCGGGGATCTCAAGAGCAAGGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCGTGATCCACTTCGCCGGGCTGAAGGCGGTGGGGGAGAGCGTCGCGCACCCGCAGATGTACTACGAGAACAACGTCGCCGGCACCATGAACCTCTACTCCGCCATGACCAAGTACGGCTGCAAGAAGATAGTGTTCTCGTCGTCGGCGACGGTG TACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCTGAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGTGCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCG CCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCAGGGACGGCACCGCGAT CAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT C CATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAGGTTTATTTAAATACTATACTAGTAGCAA                   ]
[+] EMBL AK104977             [                                                        GAGAGAGGCGCACACACGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAACGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCGTGCTGGTGACGGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGGAGAAGGGGTTCGCGGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCGTCCGCCTCATCGCCGGCGCCGCCCTCTCCGCCCGCCTCGACTTCATCGCCGGGGATCTCAAGAGCAAGGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCGTGATCCACTTCGCCGGGCTGAAGGCGGTGGGGGAGAGCGTCGCGCACCCGCAGATGTACTACGAGAACAACGTCGCCGGCACCATGAACCTCTACTCCGCCATGACCAAGTACGGCTGCAAGAAGATAGTGTTCTCGTCGTCGGCGACGGTG TACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCTGAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGTGCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCG CCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCAGGGACGGCACCGCGAT CAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT C CATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAGGTTTATTTAAATACTATACTAGTAGCAAGATCAA             ]
[+] EMBL OSS15116A            [                                                                       ACGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAACGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCNTNCTGGTGACGGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGNAGAAGGGGTTCGCGGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCTTCCGCCTCATCGCCGNCGCCGCCCTCTCCGCCCGCTTNGACTTCATCGCCGGGGATCTCAAGAGCAAGGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS14196A            [                                                                       ACGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAACGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCTTNCTGGTGACGGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGGAGAAGGGGTTCGCGGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AB097460             [                                                                        CGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAACGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCGTGCTGGTGACGGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGGAGAAGGGGTTCGCGGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCGTCCGCCTCATCGCCGGCGCCGCCCTCTCCGCCCGCCTCGACTTCATCGCCGGGGATCTCAAGAGCAAGGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCGTGATCCACTTCGCCGGGCTGAAGGCGGTGGGGGAGAGCGTCGCGCACCCGCAGATGTACTACGAGAACAACGTCGCCGGCACCATGAACCTCTACTCCGCCATGACCAAGTACGGCTGCAAGAAGATAGTGTTCTCGTCGTCGGCGACGGCG TACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCTGAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGTGCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCGACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCG CCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCAGGGACGGCACCGCGAT CAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT C CCTGGTCTTATGAACTGTGTGA                                                                                                                                                     ]
[+] EMBL CB665375             [                                                                                                                                                                                                                                        GGGTTCGCGGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCGTCCGCCTCATCGCCGGCGCCGCCCTCTCCGCCCGCCTCGACTTCATCGCCGGGGATCTCAAGAGCAAGGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCGTGATCCACTTCGCCGGGCTGAAGGCGGTGGGGGAGAGCGTCGCGCACCCGCAGATGTACTACGAGAACAACGTCGCCGGCACCATGAACCTCTACTCCGCCATGACCAAGTACGGCTGCAAGAAGATAGTGTTCTCGTCGTCGGCGACGGTG TACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCTGAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGTGCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCG CCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCAGGGACGGCACCGCGAT CAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSC700               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTCGGCGAGGNTGNTACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCTGAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGTGCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCGCCCGNCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCAGGGACGGCAACGCGAT CAGGGATTACATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB665376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCG CCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCAGGGACGGCACCGCGAT CAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT C CATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGAAAGTCAGGTTTATTTAAATACTATACTAGTAGCAAG                  ]
[+] EMBL AU096552             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGGCACCGCGATCCAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTAGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT C CATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAGGTTTATTTAAATACTATACTAGTAGCAAGATCAAAAA          ]
[-] EMBL CF324844             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGTNCNCATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAGGTTTATTTAAATACTATACTAGTAGCAAGATCAAATTGAACAATAAA]
[+] EMBL AU174074             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTAGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT C CATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAGGTTTATTTAAATACTATACTAGTAGCAAGATCAAAAA          ]
[+] EMBL C99381               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATNGAGGACATGTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGT C CATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTATACCAATTCTTATTTAGTCGAAaaaa                                                                                ]


>consensus_13820#0 GTTTCCCTTTCCCATATAAATCCCCCCCGCGTCCGCTGCGAACTACTAAACCGAGAGAGA GAGGCGCACACACGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAA CGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCGTGCTGGTGAC GGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGGAGAAGGGGTTCGC GGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCGTCCGCCT CATCGCCGGCGCCGCCCTCTCCGCCCGCCTCGACTTCATCGCCGGGGATCTCAAGAGCAA GGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCGTGATCCACTTCGCCGG GCTGAAGGCGGTGGGGGAGAGCGTCGCGCACCCGCAGATGTACTACGAGAACAACGTCGC CGGCACCATGAACCTCTACTCCGCCATGACCAAGTACGGCTGCAAGAAGATAGTGTTCTC GTCGTCGGCGACGGTGTACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCT GAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGT GCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGC TCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTA CATCCAGCAGGTCGCCGTCGGCCGCCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCC AACCAGGGACGGCACCGCGATCAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCA CATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCT AGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGG AAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGC TTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACAT GTGCAGGGACCAGTGGAATTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTGA GCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGTCCATGGT CTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGAGTAT ACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAGGT TTATTTAAATACTATACTAGTAGCAAGATCAAAAAGAACAATAAA



consensusID : consensus_13820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence
                              [CCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGNCAAGGCCAAGANGGAGCTCGGATGGAGTGCTGTTTNGAATAGAGGACATGTGCAGGGACCAGTNGANTTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATNCTNAGCAGAATNAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTNTCCATGGNCTTATGANCTATGTTACTAGAAGATGTTAANAAGACATGCGTGNCTCTCTAAGTT]

[+] EMBL AU173544             [CCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGNCAAGGCCAAGANGGAGCTCGGATGGAGTGCTGTTTNGAATAGAGGACATGTGCAGGGACCAGTNGANTTGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATNCTNAGCAGAATNAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTNTCCATGGNCTTATGANCTATGTTACTAGAAGATGTTAANAAGACATGCGTGNCTCTCTAAGTT]


>consensus_13820#1 CCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCACTGNCAAGGCCAAGANGGAG CTCGGATGGAGTGCTGTTTNGAATAGAGGACATGTGCAGGGACCAGTNGANTTGGGCCAA GAAGAATCCGTACGGATACAGCGCCAATNCTNAGCAGAATNAGGGCGATCATATTACCAC TTATATAGTACTAGTATCAAAATTNTCCATGGNCTTATGANCTATGTTACTAGAAGATGT TAANAAGACATGCGTGNCTCTCTAAGTT



consensusID : consensus_13820#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence
                              [NTTAGCATATCACCNCCTCTATNGTCCNAATATCAAAATNGTCCATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGANTATACCNATTCTTATTTAGTCCAATCCGTTGTGATTTTANATACTGGCAAATGTTNATCAGGTTTATTTAAATACTATACTAGTAGCNAGATCAAATTGAACAA]

[+] EMBL AA754605             [NTTAGCATATCACCNCCTCTATNGTCCNAATATCAAAATNGTCCATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGANTATACCNATTCTTATTTAGTCCAATCCGTTGTGATTTTANATACTGGCAAATGTTNATCAGGTTTATTTAAATACTATACTAGTAGCNAGATCAAATTGAACAA]


>consensus_13820#2 NTTAGCATATCACCNCCTCTATNGTCCNAATATCAAAATNGTCCATGGTCTTATGAACTG TGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCTTAAGTGGANTATACCNATTCTTA TTTAGTCCAATCCGTTGTGATTTTANATACTGGCAAATGTTNATCAGGTTTATTTAAATA CTATACTAGTAGCNAGATCAAATTGAACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13820#0      GTTTCCCTTTCCCATATAAATCCCCCCCGCGTCCGCTGCGAACTACTAAACCGAGAGAGA 60
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GAGGCGCACACACGAAGACGAGGCGGCGATGGTGAGCGGCGGAGGAGTAGCGGCGGAGAA 120
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      CGGCGAGATGGTGGGGAACGGGGAGGGGAGGAAGGGTGCGGGGGCGAGCGTGCTGGTGAC 180
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GGGGGGAGCGGGGTACATCGGGACGCACACGGTGCTGCGGCTGCTGGAGAAGGGGTTCGC 240
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GGTCACCGTCGTCGACAACTTCCACAACTCCGTCCCGGAGGCGCTCGACCGCGTCCGCCT 300
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      CATCGCCGGCGCCGCCCTCTCCGCCCGCCTCGACTTCATCGCCGGGGATCTCAAGAGCAA 360
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GGACGACATGGAGAAGGTGTTCGCCGCCAAGAGGTATGACGCCGTGATCCACTTCGCCGG 420
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GCTGAAGGCGGTGGGGGAGAGCGTCGCGCACCCGCAGATGTACTACGAGAACAACGTCGC 480
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      CGGCACCATGAACCTCTACTCCGCCATGACCAAGTACGGCTGCAAGAAGATAGTGTTCTC 540
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GTCGTCGGCGACGGTGTACGGCCAGCCGGAGAAGACCCCCTGCGTCGAGGATTCCAAGCT 600
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GAGCGCTCTCAACCCATACGGCACCACCAAGCTCGTCCTGGAGAACTACTTCCGGCAGGT 660
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GCAGGCCGCCGACCCGGAGATGAGGGTGATCCTGCTCAGGTACTTCAACCCCATCGGCGC 720
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      TCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAACAACCTTCTTCCGTA 780
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      CATCCAGCAGGTCGCCGTCGGCCGCCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCC 840
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      AACCAGGGACGGCACCGCGATCAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCA 900
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      CATTGCCGCACTGGAGAAGCTCTTCGCTACTCCTGACATTGGTTGTGTGGCTTACAATCT 960
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      AGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTTCGAGGAGGCGTCCGG 1020
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      AAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGC 1080
consensus_13820#1      -------------------------CCCAGAAGACCTGGAGATTGCACTGAGGTTTACGC 35
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      TTCCACTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACAT 1140
consensus_13820#1      TTCCACTGNCAAGGCCAAGANGGAGCTCGGATGGAGTGCT--GTTTNGAATAGAGGACAT 93
consensus_13820#2      --------------------NTTAGCATATCACCNCCTCTATNGTCCNAATATCAAAATN 40
                                              ***            **    *   ****    *   

consensus_13820#0      GTGCAGGGACCAGTGGAAT-TGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATGCTG 1199
consensus_13820#1      GTGCAGGGACCAGTNGANT-TGGGCCAAGAAGAATCCGTACGGATACAGCGCCAATNCTN 152
consensus_13820#2      GTCCATGGTCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACAT-GCGTGCCTCTTA 99
                       ** ** ** *   *  * * ** * * **** *         ** *  ***    *  * 

consensus_13820#0      AGCAGAATTAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTGTCCATGG 1259
consensus_13820#1      AGCAGAATNAGGGCGATCATATTACCACTTATATAGTACTAGTATCAAAATTNTCCATGG 212
consensus_13820#2      AGTGGANTATACCNATTCTTATTTAGTCCAATCCGTTGTGATTTTANATACTGGCAAATG 159
                       **  ** *        ** ****    *  **    *   * * *  * * *  * *  *

consensus_13820#0      TCTTATGAACTGTGTGACTAGAAAATGTTAATAAGACATGCGTGCCTCT-TAAGTGGAGT 1318
consensus_13820#1      NCTTATGANCTATGTTACTAGAAGATGTTAANAAGACATGCGTGNCTCTCTAAGTT---- 268
consensus_13820#2      T-TNATCAGGTTTATTTAAATACTATACTAGTA-GCNAGATCAAATTGAACAA------- 210
                         * ** *  * * *    * *  **  **  * *  *        *    **       

consensus_13820#0      ATACCAATTCTTATTTAGTCGAATCCGTTGTGATTTTAGATACTGGCAAATGTTAATCAG 1378
consensus_13820#1      ------------------------------------------------------------
consensus_13820#2      ------------------------------------------------------------
                                                                                   

consensus_13820#0      GTTTATTTAAATACTATACTAGTAGCAAGATCAAAAAGAACAATAAA 1425
consensus_13820#1      -----------------------------------------------
consensus_13820#2      -----------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)