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Oryza sativa
cluster # 13824 cluster # 13824       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13824#0 length = 1595 sequences # 11  
consensus_13824#1 length = 544 sequences # 2  
consensus_13824#2 length = 129 sequences # 1  

consensusID : consensus_13824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1595
fasta sequence
                              [CTCAAACCCGACCCCGGCCCCGACGAGTCGGAACTCGAAGCATCTCGCCTCGCCGCCGCCGCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGATCGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTGCTACGGCGCGGGGGGCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGCCCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGT-CCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTG-CCGAGG-TCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGAC-TTTGTTCGACTAATGAT-GCAACGACTA-C-AGTGCAATGTATTT-ATGCTTT-C-TTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTAGGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTATCATGCTACCCTTCTTACGATGGTTCATAGGTGGCAGTTCTTCAAAAGGTCCAAAACTTCTGAACTGTGTTGTTCGCTCCCCATGGAGTACACTTGATATCATTGCAGAGGTCAAACAACCCATTATTTTCCTTTCTGGATTACAAGATGAATTAGTTCCCCCTTCACACATGAGGTTACTATATGAAAAAGCTTTTGAGCATAATAAGAATTGTAGATTTGTTGATTTTCCCAATGGCATGCATATGGATACCTGGAATTCTGGAGGAGACCGTTACTGGAGGACAATCCAACTGTTTCTGGACCAATATGCTCCAGAAGTACAGAGTTGTAATACCAGCTGCAAAAGTGAAATTGCTAATGATGATGAAGCTGAAGAGTGACCAGAACATCTGGAGCGGCCTTC-TTTTTTTTTTCTTCCAGGCT-CCAGTTTT-CTGGTGTGATGCGATTTAAATCC-TGATGAACTGAAGCTCACTGCAAACAATTAATTCAGGCAATTATTCTCCATTCAACCTGAAGAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCACTACATTTGTCTCTGGAGCTATATATAGATTTCTGAGAAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCCCCTTGATTTAATCTGTGATGTTGCTTTGTTGAAGTTTTTTACAATATACTGTAGCGCATTA-CCATGTCATAATCTGGCCTCG-GTGTATAACAGTGTAATGCATAGGTTTTTAGGCTCTGGTTCAGCAATTTGGTTTTGTGTTTTTTATTATTGGTGTTATAGATCTGGTTGCCTGCTTCTTAAGCCTGTTATACCAAAACTGTTGCAATATCAATAGGCCATGTCTTCACCGGCAGTA]

[+] EMBL AK073927             [CTCAAACCCGACCCCGGCCCCGACGAGTCGGAACTCGAAGCATCTCGCCTCGCCGCCGCCGCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGATCGACGGCGGCGGGGGCGGGGATGGT GGCTGGCTGAAGGCGCTGTGCTACGGCGCGGGGGGCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGCCCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGT CCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTG CCGAGG TCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGAC TTTGTTCGACTAATGAT GCAACGACTA C AGTGCAATGTATTT ATGCTTT C TTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTAGGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTATCATGCTACCCTTCTTACGATGGTTCATAGGTGGCAGTTCTTCAAAAGGTCCAAAACTTCTGAACTGTGTTGTTCGCTCCCCATGGAGTACACTTGATATCATTGCAGAGGTCAAACAACCCATTATTTTCCTTTCTGGATTACAAGATGAATTAGTTCCCCCTTCACACATGAGGTTACTATATGAAAAAGCTTTTGAGCATAATAAGAATTGTAGATTTGTTGATTTTCCCAATGGCATGCATATGGATACCTGGAATTCTGGAGGAGACCGTTACTGGAGGACAATCCAACTGTTTCTGGACCAATATGCTCCAGAAGTACAGAGTTGTAATACCAGCTGCAAAAGTGAAATTGCTAATGATGATGAAGCTGAAGAGTGACCAGAACATCTGGAGCGGCCTTC TTTTTTTTTTCTTCCAGGCT CCAGTTTT CTGGTGTGATGCGATTTAAATCC TGATGAACTGAAGCTCACTGCAAACAATTAATTCAGGCAATTATTCTCCATTCAACCTGAAGAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCACTACATTTGTCTCTGGAGCTATATATAGATTTCTGAGAAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCCCCTTGATTTAATCTGTGATGTTGCTTTGTTGAAGTTTTTTACAATATACTGTAGCGCATTA CCATGTCATAATCTGGCCTCG GTGTATAACAGTGTAATGCATAGGTTTTTAGGCTCTGGTTCAGCAATTTGGTTTTGTGTTTTTTATTATTGGTGTTATAGATCTGGTTGCCTGCTTCTTAAGCCTGTTATACCAAAACTGTTGCAATATCAATAGGCCATGTCTTCACCGGCAGTA]
[+] EMBL OSS14496A            [                   CCGACGAGTCGGAACTCGAAGCATCTCGCCTCGNCGNCGNCGNCGACGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGATCGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTGCTACGGCGCGNGGGGCATGGCGGTGGTGGGGCTCGCGGCGCTCGTNGCGNTGCAGGAGCGCCTCGTCTACGTGNCCGTGCTCCCGGGGATCGCGCGGGCGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA755913             [                      ACGAGTCGGAACTCGAAGCATCTCGCCTCGCCGCCGCCGCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGATCGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTGCTACGGCGCGGGGGGCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGCCCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGT CCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTG CCGAGG TCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGAC TTTGTTCGACTAATGAT GCAACGACTA C AGTGCAATGTATTT ATGCTTT C TTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCNGGATAGTTGTTTTTGGGAGATCGTTAGGAAGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB678413             [                       CGAGTCCCTACTCGAAGCATCTCGCCTCGCCGCCGCCGCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGATCGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTGCTACGGCGCGGGGGGCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGCCCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGT CCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTG CCGAGG TCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGAC TTTGTTCGACTAATGAT GCAACGACTA C AGTGCAATGTATTT ATGCTTT C TTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTAGGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTATCATGCTACCCTTCTTACGATGGTTCATAGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK106096             [                                        CATCTCGCCTCGCCGCCGCCGCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGATCGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTGCTACGGCGCGGGGGGCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGCCCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGT CCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTG CCGAGG TCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGAC TTTGTTCGACTAATGAT GCAACGACTA C AGTGCAATGTATTT ATGCTTT C TTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTAGGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTATCATGCTACCCTTCTTACGATGGTTCATAGGTGGCAGTTCTTCAAAAGGTCCAAAACTTCTGAACTGTGTTGTTCGCTCCCCATGGAGTACACTTGATATCATTGCAGAGGTCAAACAACCCATTATTTTCCTTTCTGGATTACAAGATGAATTAGTTCCCCCTTCACACATGAGGTTACTATATGAAAAAGCTTTTGAGCATAATAAGAATTGTAGATTTGTTGATTTTCCCAATGGCATGCATATGGATACCTGGAATTCTGGAGGAGACCGTTACTGGAGGACAATCCAACTGTTTCTGGACCAATATGCTCCAGAAGTACAGAGTTGTAATACCAGCTGCAAAAGTGAAATTGCTAATGATGATGAAGCTGAAGAGTGACCAGAACATCTGGAGCGGCCTTCTTTTTTTTTTTCTTCCAGGCT CCAGTTTT CTGGTGTGATGCGATTTAAATCC TGATGAACTGAAGCTCACTGCAAACAATTAATTCAGGCAATTATTCTCCATTCAACCTGAAGAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCACTACATTTGTCTCTGGAGCTATATATAGATTTCTGAGAAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCCCCTTGATTTAATCTGTGATGTTGCTTTGTTGAAGTTTTTTACAATATACTGTAGCGCATTA CCATGTCATAATCTGGCCTCG GTGTATAACAGTGTAATGCATAGGTTTTTAGGCTCTGGTTCAGCAATTTGGTTTTGTGTTTTTTATTATTGGTGTTATAGATCTGGTTGCCTGCTTCTTAAGCCTGTTATACCAAAACTGTTGCAATATCAATAGGCCATGTCTTCACCGGCAGTA]
[+] EMBL C97711               [                                                      GCCGCCGCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGATCGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTNCTACGGCGCGGGGGGCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGCCCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGG GTNCCGCCTCCACTCCTGGTTCATCCGCCANTCCCCCACCTGNCCGAGG TCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGACTTTTGTTCGACTAATGATGGCAACGA TANCAATTGCAATGTATTTAATGCTTTNCTTTACAGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AW070006             [                                                                                                                                                                                                                                                                                                                                                                                     G CC AGGTTCCAACTATTTTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGAC TTTGTTCGACTAATGAT GCAACGACTA C AGTGCAATGTATTT ATGCTTT C TTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGCTGCACTTGATCATCTAGTTCAAAGGAAGGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTAGGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACACCTATATTGGATATGGCTGGTATCATGCTACCCTTCTTACGATGGTTCGTAGGTGGCAGTTCTTCAAAAGGTCCAAAACTTCTGAACTGTGTTGTTCGCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB678414             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TACACTTGATATCATTGCAGAGGTCAAACAACCCATTATTTTCCTTTCTGGATTACAAGATGAATTAGTTCCCCCTTCACACATGAGGTTACTATATGAAAAAGCTTTTGAGCATAATAAGAATTGTAGATTTGTTGATTTTCCCAATGGCATGCATATGGATACCTGGAATTTTGGAGGAGACCGTTACTGGAGGACAATCCACCTGTTTCTGGACCAATATGCTCCAGAAGTACAGAGTTGTAATACCAGCTGCAAAAGTGAAATTGCTAATGATGATGAAGCTGAAGAGTGACCAGAACATCTGGAGCGGCCTTC TTTTTTTTTTCTTCCAGGCT CCAGTTTT ATGGTGTGATGCGATTTAAATCC TGATGAATTGAAGCTCACTGCAAACAATTAATTCAGGCAATTATTCTCCATTCAACTTGAAGAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCAGTACATTTGTCTCTGGAGCTATATATAGATTTGTGAGAAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCCCCTTGATTTAATCTGTGATGATGCTTTGTGGAAGTTTTTTACAATCTTTTGTAGAGCATTACCCATGTCATAATCTGCCCTCGTGTGTTTCACTGTGTAATGCATAGGTTTTTAGGATGTGGTTCATCAATTTGGTTTTGTGTTTTTTATTATGGGGGTTATAGATGTGGTTACTTGCTTCTTAAGCGTGTTATATCAAACCTGT                                   ]
[+] EMBL OSC8331              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTTTTTCTNCCAGGTTNCCAGTTTTNCTGGTGTGATGCGATTTAAATCC TGATGAACTGAAGCTCACTGCAAACANTTAATTCAGGCAATTATTCTCCATTCAACCTGAAGAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCACTACANTTGTCTCTGGAGCTATATATAGATTTCTGAGNAGACCTAGCCTTTGA                                                                                                                                                                                                                                                                     ]
[+] EMBL AU100976             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TAAATCCTTGATGAACTGAAGCTCACTGCAAACAATTAATTCAGGCNATTATTCTCCATTCAACCTGAAGAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCACTACATTTGTCTCTGGAGCTATATATAGATTTCTGAGAAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCCCCTTGATTTAATCTGTGATGTTGCTTTGTTGAAGTTTTTTACAATATACTGTAGCGCATTA CCATGTCATAATCTGGCCTCG GTGTATAACAGTGTAATGCATAGGTTTTTAGGCTCTGGTTCAGCAATTTGGTTTTGTGTTTTTTAaaaaaa                                                                                     ]
[+] EMBL BI795578             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCACTACATTTGTCTCTGGAGCTATATATAGATTTCTGAGAAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCCCCTTGATTTAATCTGTGATGTTGCTTTGTTGAAGTTTTTTACAATATACTGTAGCGCATTA CCATGTCAGAATCTGGCCTCG GTGTATAACAGTGTAATGCATAGGTTTTTAGGCTCaaaaaa                                                                                                                   ]


>consensus_13824#0 CTCAAACCCGACCCCGGCCCCGACGAGTCGGAACTCGAAGCATCTCGCCTCGCCGCCGCC GCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGAT CGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTGCTACGGCGCGGGGG GCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGC CCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCT ACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGTCCGCCTCCACTCCTGGTTCATCCGCC ACTCCCCCACCTGCCGAGGTCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTG CACATCGTTTGGACTTTGTTCGACTAATGATGCAACGACTACAGTGCAATGTATTTATGC TTTCTTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATG ATGCACAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAG TTGTTTTTGGGAGATCGTTAGGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTG GCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTA TCATGCTACCCTTCTTACGATGGTTCATAGGTGGCAGTTCTTCAAAAGGTCCAAAACTTC TGAACTGTGTTGTTCGCTCCCCATGGAGTACACTTGATATCATTGCAGAGGTCAAACAAC CCATTATTTTCCTTTCTGGATTACAAGATGAATTAGTTCCCCCTTCACACATGAGGTTAC TATATGAAAAAGCTTTTGAGCATAATAAGAATTGTAGATTTGTTGATTTTCCCAATGGCA TGCATATGGATACCTGGAATTCTGGAGGAGACCGTTACTGGAGGACAATCCAACTGTTTC TGGACCAATATGCTCCAGAAGTACAGAGTTGTAATACCAGCTGCAAAAGTGAAATTGCTA ATGATGATGAAGCTGAAGAGTGACCAGAACATCTGGAGCGGCCTTCTTTTTTTTTTCTTC CAGGCTCCAGTTTTCTGGTGTGATGCGATTTAAATCCTGATGAACTGAAGCTCACTGCAA ACAATTAATTCAGGCAATTATTCTCCATTCAACCTGAAGAAGGCAAAGTTGTGAATACCT TGAGGTTGCTCTCCATCCTAGCACTACATTTGTCTCTGGAGCTATATATAGATTTCTGAG AAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCCCCTTGATTTAATCTGTGATGTTG CTTTGTTGAAGTTTTTTACAATATACTGTAGCGCATTACCATGTCATAATCTGGCCTCGG TGTATAACAGTGTAATGCATAGGTTTTTAGGCTCTGGTTCAGCAATTTGGTTTTGTGTTT TTTATTATTGGTGTTATAGATCTGGTTGCCTGCTTCTTAAGCCTGTTATACCAAAACTGT TGCAATATCAATAGGCCATGTCTTCACCGGCAGTA



consensusID : consensus_13824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 544
fasta sequence
                              [CGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGTCCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTGCCGAGGTCCAACTATTCTGTTCTTTCAAGAAAATGCTGGCAATATTGCACATCGTTTGGACTTTGTTCGACTAATGATGCAACGACTACAGTGCAATGTATTTATGCTTTCTTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGTTTGCTGATTCGTTCAATCGGTTTTATGTTAAGTTTTCTGTTTCTGTCTATTCTCTTACTGCTCTCTTTTTAATAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTANGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTATCATG]

[+] EMBL CF304149             [CGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGTCCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTGCCGAGGTCCAACTATTCTGTTCTTTCAAGAAAATGCTGGCAATATTGCACATCGTTTGGACTTTGTTCGACTAATGATGCAACGACTACAGTGCAATGTATTTATGCTTTCTTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGTTTGCTGATTCGTTCAATCGGTTTTATGTTAAGTTTTCTGTTTCTGTCTATTCTCTTACTGCTCTCTTTTTAATAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTANGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTATCATG]
[+] EMBL CF303789             [CGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGTCCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTGCCGAGGTCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTGCACATCGTTTGGACTTTGTTCGACTAATGATGCAACGACTACAGTGCAATGTATTTATGCTTTCTTACAGAGGGTATGGTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGTTTGCTGATTCGTTCAATCGGTTTTATGTTAAGTTTTCTGTTTCTGTCTATTCTCTTACTGCTCTCTTTTTAATAGGCTG                                                                                                                                                                             ]


>consensus_13824#1 CGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCTACGAGGACGTCTGGCTCC GCGCCGCCGACGGCGTCCGCCTCCACTCCTGGTTCATCCGCCACTCCCCCACCTGCCGAG GTCCAACTATTCTGTTCTTTCAAGAAAATGCTGGCAATATTGCACATCGTTTGGACTTTG TTCGACTAATGATGCAACGACTACAGTGCAATGTATTTATGCTTTCTTACAGAGGGTATG GTGAGAGTGATGGTTATCCTTCTCAGAAGGGCATCATAAATGATGCACAGGTTTGCTGAT TCGTTCAATCGGTTTTATGTTAAGTTTTCTGTTTCTGTCTATTCTCTTACTGCTCTCTTT TTAATAGGCTGCACTTGATCATCTAGTTCAGAGGAAGGATATTGACACATCCAGGATAGT TGTTTTTGGGAGATCGTTANGAGGTGCTGTTGGAGCAGTGCTTGCGAAAAACAATCCTGG CAAGGTGTCAGCTCTAATACTGGAAAACACCTTTACATCTATATTGGATATGGCTGGTAT CATG



consensusID : consensus_13824#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence
                              [CGAGNACAAGGGGCAGAGGGTATCGGTGNAGAGTGATGGTTTATCCTTCTCANAAGGGCATCATAAATGATGCACAGGCTGCACTTTGATCATTCTAGTTCAGAGGAAAGGATATNGACACATCCAGNA]

[+] EMBL CB096361             [CGAGNACAAGGGGCAGAGGGTATCGGTGNAGAGTGATGGTTTATCCTTCTCANAAGGGCATCATAAATGATGCACAGGCTGCACTTTGATCATTCTAGTTCAGAGGAAAGGATATNGACACATCCAGNA]


>consensus_13824#2 CGAGNACAAGGGGCAGAGGGTATCGGTGNAGAGTGATGGTTTATCCTTCTCANAAGGGCA TCATAAATGATGCACAGGCTGCACTTTGATCATTCTAGTTCAGAGGAAAGGATATNGACA CATCCAGNA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13824#0      CTCAAACCCGACCCCGGCCCCGACGAGTCGGAACTCGAAGCATCTCGCCTCGCCGCCGCC 60
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      GCCGCCGCACGCCCGACGGAAGCGAGCGCCTCTCTCTCTCTCTCTCACCGGCGACGGGAT 120
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      CGACGGCGGCGGGGGCGGGGATGGTGGGCTGGCTGAAGGCGCTGTGCTACGGCGCGGGGG 180
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      GCATGGCGGTGGTGGGGCTCGCGGCGCTCGTGGCGCTGCAGGAGCGCCTCGTCTACGTGC 240
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      CCGTGCTCCCGGGGATCGCGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCT 300
consensus_13824#1      ------------------CGCGGGCGTACCCCATCACCCCCGACCGCCTCCGCCTCATCT 42
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      ACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGTCCGCCTCCACTCCTGGTTCATCCGCC 360
consensus_13824#1      ACGAGGACGTCTGGCTCCGCGCCGCCGACGGCGTCCGCCTCCACTCCTGGTTCATCCGCC 102
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      ACTCCCCCACCTGCCGAGGTCCAACTATTCTGTTCTTCCAAGAAAATGCTGGCAATATTG 420
consensus_13824#1      ACTCCCCCACCTGCCGAGGTCCAACTATTCTGTTCTTTCAAGAAAATGCTGGCAATATTG 162
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      CACATCGTTTGGACTTTGTTCGACTAATGATGCAACGACTACAGTGCAATGTATTTATGC 480
consensus_13824#1      CACATCGTTTGGACTTTGTTCGACTAATGATGCAACGACTACAGTGCAATGTATTTATGC 222
consensus_13824#2      ------------------------------------------------------CGAGNA 6
                                                                               *   

consensus_13824#0      TTTCTTACAGAGGGTAT-GGTGA-GAGTGATGGTT-ATCCTTCTCAGAAGGGCATCATAA 537
consensus_13824#1      TTTCTTACAGAGGGTAT-GGTGA-GAGTGATGGTT-ATCCTTCTCAGAAGGGCATCATAA 279
consensus_13824#2      CAAGGGGCAGAGGGTATCGGTGNAGAGTGATGGTTTATCCTTCTCANAAGGGCATCATAA 66
                              ********** ****  *********** ********** *************

consensus_13824#0      ATGATGCACAGG------------------------------------------------ 549
consensus_13824#1      ATGATGCACAGGTTTGCTGATTCGTTCAATCGGTTTTATGTTAAGTTTTCTGTTTCTGTC 339
consensus_13824#2      ATGATGCACAGG------------------------------------------------ 78
                       ************                                                

consensus_13824#0      -----------------------------CTGCACTT-GATCAT-CTAGTTCAGAGGAA- 577
consensus_13824#1      TATTCTCTTACTGCTCTCTTTTTAATAGGCTGCACTT-GATCAT-CTAGTTCAGAGGAA- 396
consensus_13824#2      -----------------------------CTGCACTTTGATCATTCTAGTTCAGAGGAAA 109
                                                    ******** ****** ************** 

consensus_13824#0      GGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTAGGAGGTGCTGTTGGAGC 637
consensus_13824#1      GGATATTGACACATCCAGGATAGTTGTTTTTGGGAGATCGTTANGAGGTGCTGTTGGAGC 456
consensus_13824#2      GGATATNGACACATCCAGNA---------------------------------------- 129
                       ****** *********** *                                        

consensus_13824#0      AGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTAC 697
consensus_13824#1      AGTGCTTGCGAAAAACAATCCTGGCAAGGTGTCAGCTCTAATACTGGAAAACACCTTTAC 516
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      ATCTATATTGGATATGGCTGGTATCATGCTACCCTTCTTACGATGGTTCATAGGTGGCAG 757
consensus_13824#1      ATCTATATTGGATATGGCTGGTATCATG-------------------------------- 544
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      TTCTTCAAAAGGTCCAAAACTTCTGAACTGTGTTGTTCGCTCCCCATGGAGTACACTTGA 817
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      TATCATTGCAGAGGTCAAACAACCCATTATTTTCCTTTCTGGATTACAAGATGAATTAGT 877
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      TCCCCCTTCACACATGAGGTTACTATATGAAAAAGCTTTTGAGCATAATAAGAATTGTAG 937
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      ATTTGTTGATTTTCCCAATGGCATGCATATGGATACCTGGAATTCTGGAGGAGACCGTTA 997
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      CTGGAGGACAATCCAACTGTTTCTGGACCAATATGCTCCAGAAGTACAGAGTTGTAATAC 1057
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      CAGCTGCAAAAGTGAAATTGCTAATGATGATGAAGCTGAAGAGTGACCAGAACATCTGGA 1117
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      GCGGCCTTCTTTTTTTTTTCTTCCAGGCTCCAGTTTTCTGGTGTGATGCGATTTAAATCC 1177
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      TGATGAACTGAAGCTCACTGCAAACAATTAATTCAGGCAATTATTCTCCATTCAACCTGA 1237
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      AGAAGGCAAAGTTGTGAATACCTTGAGGTTGCTCTCCATCCTAGCACTACATTTGTCTCT 1297
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      GGAGCTATATATAGATTTCTGAGAAGACCTAGCCTTTGAACTGATGATTCCCCCTCCCCC 1357
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      CCTTGATTTAATCTGTGATGTTGCTTTGTTGAAGTTTTTTACAATATACTGTAGCGCATT 1417
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      ACCATGTCATAATCTGGCCTCGGTGTATAACAGTGTAATGCATAGGTTTTTAGGCTCTGG 1477
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      TTCAGCAATTTGGTTTTGTGTTTTTTATTATTGGTGTTATAGATCTGGTTGCCTGCTTCT 1537
consensus_13824#1      ------------------------------------------------------------
consensus_13824#2      ------------------------------------------------------------
                                                                                   

consensus_13824#0      TAAGCCTGTTATACCAAAACTGTTGCAATATCAATAGGCCATGTCTTCACCGGCAGTA 1595
consensus_13824#1      ----------------------------------------------------------
consensus_13824#2      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)