These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1201 fasta sequence [TCGTCTCCTCTTGGCCTTTCCTCCATCCCTTCGGAAAAACCCTAGCAAATCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA-CC-TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC-TGAAAATAGTGGCAGC-AAGATAAGCATT-GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA-TGACA-GGCTAG-TTTACCA-GGGACCTATATCATCGACCATAA-GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGG--TTTGTGAG-CCCGT-ACATTCAC-AAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG-TTGCCCA-ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC-AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA-CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAAAAAAAAAA] [+] EMBL CF295630 [TCGTCTCCTCTTGGCCTTTCCTCCATCCCTTCGGAAAAACCCTAGCAAATCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCATCT TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATATCATCGACCATAA GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCACTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAA ] [+] EMBL CF295185 [ TAGCAAATCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATC ] [+] EMBL AK102872 [ TCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATATCATCGACCATAA GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGG TTTGTGAG CCCGT ACATTCAC AAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTT ] [+] EMBL AK059849 [ CCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATATCATCGACCATAA GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGG TTTGTGAG CCCGT ACATTCAC AAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGC ] [+] EMBL C25976 [ GGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CCTTCGCCGCCGCAAGTTTTCTCCCGCGTCTCANATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAACTTGAAAATAGTGGCAGCAAAGATAAGCATTGGGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGATTGACAGGGCTAGTTTTACCAGGGGACCTATATCATCGNCCATAAGGAAAAGTGAGGGTTCTTTCTCTGT ] [+] EMBL C27047 [ ATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATAT ] [+] EMBL AU100654 [ CTTACACTGGGTTTTGTGAGCCCCGTAACATTCACAAAGNTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCNACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTAaaaaaaaa ] [+] EMBL AK058371 [ TATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCTCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGT ] [+] EMBL BI807376 [ TATGTCAT GCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCA GCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTTGCCCACATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTT GCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATCAAGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACACCTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAAAAAAAAAA] [-] EMBL CF295629 [ CTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATAGTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTaaaaaaa ] consensusID : consensus_13852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1060 fasta sequence [CCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATATCATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCTTGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATCAGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACACTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAGAGATATGATATATTTGCAACCATTGTTCAAA] [+] EMBL AK120043 [CCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATATCATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCTTGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATCAGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACACTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAGAGATATGATATATTTGCAACCATTGTTCAAA] consensusID : consensus_13852#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 792 fasta sequence [GAGCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGATGCCCAGTGACCTCATGGCTGCACTCGCGTTCATGATCATTTGGTTGGCAGCGGACATTGGTATTGTGATACCTCCCTGCTAATACTTGCAGAAGAAGTAGTATACTTTGGGTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCCTGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATGAGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGATGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGTCCACTGTTCTGCATCGTATATGTCCTATGCTCCGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTCGTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAGCCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAGGGACGTATTGTGCAC] [+] EMBL BE040424 [GAGCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGATGCCCAGTGACCTCATGGCTGCACTCGCGTTCATGATCATTTGGTTGGCAGCGGACATTGGTATTGTGATACCTCCCTGCTAATACTTGCAGAAGAAGTAGTATACTTTGGGTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCCTGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATGAGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGATGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGTCCACTGTTCTGCATCGTATATGTCCTATGCTCCGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTCGTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAGCCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAGGGACGTATTGTGCAC] [+] EMBL CA758935 [GAGCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATGATCATTT GTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAAAAGTAGTATACTAT GTTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCCTGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATGAGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGATGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGTCCACTGTTCTGCATCGTATATGTCCTATGCTCCGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTCGTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAGCCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAGGGACGTATTGTGCAC] consensusID : consensus_13852#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [GCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCNCAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTNTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTNTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174252 [GCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCNCAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTNTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTNTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13852#0 TCGTCTCCTCTTGGCCTTTCCTCCATCCCTTCGGAAAAACCCTAGCAAATCCCCGCCTCG 60 consensus_13852#1 --------------------------------------------------CCCCGCCTCG 10 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 ATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCC 120 consensus_13852#1 ATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCC 70 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 TCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAG 180 consensus_13852#1 TCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAG 130 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 ATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTC 240 consensus_13852#1 ATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTC 190 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 TTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTT 300 consensus_13852#1 TTCCAAAA---------------------------------------------------- 198 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 CTCAAGCTGCTGCTGTTAAAGAAACTGAAAATAGTGGCAGCAAGATAAGCATTGGGCCAA 360 consensus_13852#1 ------------------------------------------------------------ consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 AATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATAT 420 consensus_13852#1 --TCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATAT 256 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 CATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGC 480 consensus_13852#1 CATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGC 316 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 TTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTG 540 consensus_13852#1 TTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTG 376 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ------------------------------------------------------------ consensus_13852#0 TTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGA 600 consensus_13852#1 TTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGA 436 consensus_13852#3 --------------------------------------GCAGCCTTACACTGGTTTGTGA 22 consensus_13852#2 ----------------------------------------------------------GA 2 ** consensus_13852#0 GCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 660 consensus_13852#1 GCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 496 consensus_13852#3 GCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 82 consensus_13852#2 GCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 62 ****** ***************************************************** consensus_13852#0 TGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 720 consensus_13852#1 TGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 556 consensus_13852#3 TGTCATGGCTGGCTACACCCCTCNCAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 142 consensus_13852#2 TGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 122 *** ****************** ************************************ consensus_13852#0 AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCG 780 consensus_13852#1 AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCG 616 consensus_13852#3 AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTNTATTTTGTTGATGCCG 202 consensus_13852#2 AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCG 182 ******************************************* **************** consensus_13852#0 AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTG 840 consensus_13852#1 AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTG 676 consensus_13852#3 AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTNTG 262 consensus_13852#2 AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTG 242 ********************************************************* ** consensus_13852#0 CATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATG 900 consensus_13852#1 CATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCTTGGCTGCACTCGCGTTCATG 736 consensus_13852#3 CATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATG 322 consensus_13852#2 CATTCAAGAACTTGTGATTGAAGGATGCCCAGTGACCTCATGGCTGCACTCGCGTTCATG 302 ************************ ****** ******* ******************** consensus_13852#0 ATCATTTG-TTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAG 959 consensus_13852#1 ATCATTTG-TTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAG 795 consensus_13852#3 ATCATTTG-TTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAG 381 consensus_13852#2 ATCATTTGGTTGGCAGCGGACATTGGTATTGTGATACCTCCCTGCTAATACTTGCAGAAG 362 ******** ******* ***** *************************** ****** consensus_13852#0 AAGTAGTATACTATGT-TATTAGCGTTCCTTTAAAT-CCATGTGGAAATCAGTAAATGC- 1016 consensus_13852#1 AAGTAGTATACTATGT-TATTAGCGTTCCTTTAAAT-CCATGTGGAAATCAGTAAATGC- 852 consensus_13852#3 AAGTAGTATACTATGT-TATTAGCGTTCCTTTAAAA-AAAAAAAAAAAAAAA-------- 431 consensus_13852#2 AAGTAGTATACTTTGGGTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCC 422 ************ ** ****************** * * * consensus_13852#0 TGGTGTCATACTACGATTTTAGTTAAGACACTGAGA-TGGCGTGCTGACTGTTCTTAATA 1075 consensus_13852#1 TGGTGTCATACTACGATTTTAGTTAAGACACTGAGA-TGGCGTGCTGACTGTTCTTAATA 911 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 TGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATG 482 consensus_13852#0 AGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACAT-TCTGTTGTTTATGATGTTGCAA 1134 consensus_13852#1 AGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACAT-TCTGTTGTTTATGATGTTGCAA 970 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 AGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGA 542 consensus_13852#0 TGCTACACGCCCGTGT-GTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAA 1193 consensus_13852#1 TGCTACACGCCCGTGT-GTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAG 1029 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 TGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGT----CCACTGTTCTGCATCGT 598 consensus_13852#0 AAAAAAAA---------------------------------------------------- 1201 consensus_13852#1 AGATATGATATATTTGCAACCATTGTTCAAA----------------------------- 1060 consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 ATATGTCCTATGCTC-CGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTC 657 consensus_13852#0 ------------------------------------------------------------ consensus_13852#1 ------------------------------------------------------------ consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 GTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAG 717 consensus_13852#0 ------------------------------------------------------------ consensus_13852#1 ------------------------------------------------------------ consensus_13852#3 ------------------------------------------------------------ consensus_13852#2 CCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAG 777 consensus_13852#0 --------------- consensus_13852#1 --------------- consensus_13852#3 --------------- consensus_13852#2 GGACGTATTGTGCAC 792 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||