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Oryza sativa
cluster # 13856 cluster # 13856       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13856#0 length = 722 sequences # 9  
consensus_13856#1 length = 531 sequences # 1  
consensus_13856#2 length = 522 sequences # 2  
consensus_13856#3 length = 426 sequences # 1  
consensus_13856#4 length = 374 sequences # 1  

consensusID : consensus_13856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 722
fasta sequence
                              [GTCGTTGCCTCCTCCT-CCCGCATTTC-TTTCACCTCTC-CCGCGA-TCCATCC-AAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCGTCCTCCTCCTCCGCCTCCG-TCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTCTACATTCTTACCTCACCTTTTTCTCCCTTTCTCAGCAGTATTCATATAGCCTTGTAGGGCTCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGTTGGTAGCCTAATCTGCATGTTTTTGTTCTGGAGCACTTTAGTTTGTGTGATCTTGCCAAAAAA]

[+] EMBL AK122146             [GTCGTTGCCTCCTCCTCCCCGCATTTCGTTTCACCTCTCGCCGCGA TCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCGTCCTCCTCCTCCGCCTCCG TCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCGCAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATAT                                                                                                                                                                                                                   ]
[+] EMBL CA999446             [                      ATTTCGTTTCACCTCTCGCCGCGA TCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCTCCTCCTCCGCCTCCG TCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI796972             [               c acgctccTTC TTTCACCTCTC CCGCGA TCCATCC AAATCCCCCAA CC CTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCTCCTCCTCCGCCTCCG TCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTCTACATTCTTACCTCAaaaaaaaa                                                                                                                                                                ]
[+] EMBL C74377               [                                      ncngnCGATTCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCNTCGTCCTCCTCCTCCGCCTCCG TCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTNAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTTGGGAAAAAGGAGTTAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATANGGGTGATAGCTTCAAGGCTTCCTATGGTGT TTTTAAGTTGCAC AATAAATACTGTTGAAG TAACTCTTGTAANA TACTGGTGGTAACTGTGGATTc                                                                                                                                                                                                                                                                 ]
[+] EMBL AU164882             [                                                   cca AAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCGTCCTCNTCCTCCGCCTCCGTTCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGG TTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTAATGGAATATCAGTTTGTTTACAGTATCTATTAATTTCTACATTCTTAaaaa                                                                                                                                                                         ]
[+] EMBL CF330455             [                                                             CCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCTCCTCCTCCGCCTCCG TCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTTATAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTTTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTCTACATTCTTACCTCACCTTTTTCTCCCTTTCTCAGCA                                                                                                                                                  ]
[+] EMBL AK063787             [                                                                                     AATCAATCCGTCGTCGTCCTCCTCCTCCGCCTCCG TCTCAAGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTCTACATTCTTACCTCACCTTTTTCTCCCTTTCTCAGCAGTATTCATATAGCCTTGTAGGGCTCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGTTGGTAGCCTAATCTGCATGTTTTT                                       ]
[-] EMBL AU165014             [                                                                                                                                                                                                                                                                                                                                                                               ATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTCTACATTCTTACCTCACCTTTTTCTCCCTTTCTCAGCAGTATTCATATAGCCTTGTAGGGCTCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGTTGGTAGCCTAATCTGCATGTTTTTGTTCTGGAGCACTTTAGTTTGTGTGATCTTGCCAAAAAA]
[+] EMBL CA765236             [                                                                                                                                                                                                                                                                                                                                                                                              TCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAGTACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTAC                                                                                                                                                                                                       ]


>consensus_13856#0 GTCGTTGCCTCCTCCTCCCGCATTTCTTTCACCTCTCCCGCGATCCATCCAAATCCCCCA AGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCGTCCTCCTCCTCCGCCTCCGTCTCA AGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTT CAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCC ATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATG TCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAG CATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACT GTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAGC TGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTCT ACATTCTTACCTCACCTTTTTCTCCCTTTCTCAGCAGTATTCATATAGCCTTGTAGGGCT CATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGTT GGTAGCCTAATCTGCATGTTTTTGTTCTGGAGCACTTTAGTTTGTGTGATCTTGCCAAAA AA



consensusID : consensus_13856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence
                              [AGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAAGAAATGACAGAANCNCCGTNTTTGCCGCGCGAGAAGGCTCTATAAGCACCACCANTATTTTCAAAACTTGACNAAGCACACTTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGNTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTNCAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCNCTCATTTCANTACTTCANCATANGGGTGATAGCTTCAAGGCTTCCNATGGTGTCTTTTAATTTGCACAAATAAATACTGTTGAAANTTAACTCTNGTTATATTACTGTTGGTAACTGTGGATTTCTNATTTAAACAAACTGTTGTCCNAATNATGGTAGTATTGGAATATCNCTTTGTTTACANTATCTATTAATTTCTACATTC]

[+] EMBL AA752041             [AGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAAGAAATGACAGAANCNCCGTNTTTGCCGCGCGAGAAGGCTCTATAAGCACCACCANTATTTTCAAAACTTGACNAAGCACACTTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGNTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTNCAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCNCTCATTTCANTACTTCANCATANGGGTGATAGCTTCAAGGCTTCCNATGGTGTCTTTTAATTTGCACAAATAAATACTGTTGAAANTTAACTCTNGTTATATTACTGTTGGTAACTGTGGATTTCTNATTTAAACAAACTGTTGTCCNAATNATGGTAGTATTGGAATATCNCTTTGTTTACANTATCTATTAATTTCTACATTC]


>consensus_13856#1 AGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGT CCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAAGAAATGACAGAANCNCC GTNTTTGCCGCGCGAGAAGGCTCTATAAGCACCACCANTATTTTCAAAACTTGACNAAGC ACACTTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGNTCTTG CCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTNCAACATGTCTCATGGAGTCGGGA AAAAGGAGTGAACGACATGGTTTCCNCTCATTTCANTACTTCANCATANGGGTGATAGCT TCAAGGCTTCCNATGGTGTCTTTTAATTTGCACAAATAAATACTGTTGAAANTTAACTCT NGTTATATTACTGTTGGTAACTGTGGATTTCTNATTTAAACAAACTGTTGTCCNAATNAT GGTAGTATTGGAATATCNCTTTGTTTACANTATCTATTAATTTCTACATTC



consensusID : consensus_13856#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence
                              [GCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTTTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTTTACATTCTTACCTCACCTTTTTCTCCCTTTTTCAGCAGTATTCATATAGCCTTGTAGGGCTCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGTTGGTAGCCTAATCTGCAAAAAAAAAAAAAAAGA]

[-] EMBL CF330454             [GCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTTTGATTTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTTTACATTCTTACCTCACCTTTTTCTCCCTTTTTCAGCAGTATTCATATAGCCTTGTAGGGCTCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGTTGGTAGCCTAATCTGCAAAAAAAAAAAAAAAGA]
[+] EMBL AA752392             [ cgagATTTTCAGAACTTKACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCTTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTCTCATTGTGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTYTTTTAAGTTG                                                                                                                                                                                                                                                                                              ]


>consensus_13856#2 GCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCAC CTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGT GTACAACATGTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTC AGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACA AATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTTTGAT TTAAGCAAGCTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCT ATTAATTTTTACATTCTTACCTCACCTTTTTCTCCCTTTTTCAGCAGTATTCATATAGCC TTGTAGGGCTCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCA GGCTGGTGTTGGTAGCCTAATCTGCAAAAAAAAAAAAAAAGA



consensusID : consensus_13856#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence
                              [AATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTNTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCNCAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGNAACTGTGGATTTNTGATTTAAGCAAGCTGTTGTCAANATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCNAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172812             [AATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTNTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCNCAAATAAATACTGTTGAAGTTAACTCTTGTTATATTACTGTTGGNAACTGTGGATTTNTGATTTAAGCAAGCTGTTGTCAANATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCNAAAAAAAAAAAAAAAAAA]


>consensus_13856#3 AATGACAGAATCACCGTTTTTGCCGCGCGAGAGGCTCTTTAAGCAGCAGCAGTATTTTCA GAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGCCAT TCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACATGTN TCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCAGCA TAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCNCAAATAAATACTGT TGAAGTTAACTCTTGTTATATTACTGTTGGNAACTGTGGATTTNTGATTTAAGCAAGCTG TTGTCAANATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCNAAAAAAAAAAAA AAAAAA



consensusID : consensus_13856#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence
                              [GAGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAAGAATGACAGAANNNCCGTTTTTGCCGCGCGAGANGCTCTTTAANCANCAACANTATTTTCAGAANTTGACCAAGCACACGTTTCTNAAANGGGGTTATGATGTGGTCACCTCCGTTGCCATTCCCCNCGNTCTTGNCGGCTCCAGCTTGTTTATGANAAGNCGNGGGGTGTACAACATNTTTCNTGGAATCCGGNAAAANGAGTNAACNANATNGTTTCCTCNCNTTTCANTNCTTCNCATANGGGTGATAGCTTCCAAGGTTCCTATGG]

[+] EMBL AA752042             [GAGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAAGAATGACAGAANNNCCGTTTTTGCCGCGCGAGANGCTCTTTAANCANCAACANTATTTTCAGAANTTGACCAAGCACACGTTTCTNAAANGGGGTTATGATGTGGTCACCTCCGTTGCCATTCCCCNCGNTCTTGNCGGCTCCAGCTTGTTTATGANAAGNCGNGGGGTGTACAACATNTTTCNTGGAATCCGGNAAAANGAGTNAACNANATNGTTTCCTCNCNTTTCANTNCTTCNCATANGGGTGATAGCTTCCAAGGTTCCTATGG]


>consensus_13856#4 GAGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAAGCCGCTGCAAGGATCG TCCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAAGAATGACAGAANNNCC GTTTTTGCCGCGCGAGANGCTCTTTAANCANCAACANTATTTTCAGAANTTGACCAAGCA CACGTTTCTNAAANGGGGTTATGATGTGGTCACCTCCGTTGCCATTCCCCNCGNTCTTGN CGGCTCCAGCTTGTTTATGANAAGNCGNGGGGTGTACAACATNTTTCNTGGAATCCGGNA AAANGAGTNAACNANATNGTTTCCTCNCNTTTCANTNCTTCNCATANGGGTGATAGCTTC CAAGGTTCCTATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13856#2      ------------------------------------------------------------
consensus_13856#3      ------------------------------------------------------------
consensus_13856#0      GTCGTTGCCTCCTCCTCCCGCATTTCTTTCACCTCTCCCGCGATCCATCCAAATCCCCCA 60
consensus_13856#1      -----------------AGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAA 43
consensus_13856#4      ----------------GAGATTCGTTTCACTCTCGCCGCGATCCATCCAAAATCCCCCAA 44
                                                                                   

consensus_13856#2      ------------------------------------------------------------
consensus_13856#3      ------------------------------------------------------------
consensus_13856#0      AGCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCGTCCTCCTCCTCCGCCTCCGTCTCA 120
consensus_13856#1      GCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAA 103
consensus_13856#4      GCCGCTGCAAGGATCGTCCAATCAATCCGTCGTCCTCCNCCTCCTCCGCCTCCGTCTCAA 104
                                                                                   

consensus_13856#2      ---------------------------------------------------GCAGTATTT 9
consensus_13856#3      --AATGACAGAATCACCGTTTTTGCCGCGCGAGAGG-CTCTTTAAGCAGCAGCAGTATTT 57
consensus_13856#0      AGAATGACAGAATCACCGTTTTTGCCGCGCGAGAGG-CTCTTTAAGCAGCAGCAGTATTT 179
consensus_13856#1      GAAATGACAGAANCNCCGTNTTTGCCGCGCGAGAAGGCTCTATAAGCACCACCANTATTT 163
consensus_13856#4      GAA-TGACAGAANNNCCGTTTTTGCCGCGCGAGANG-CTCTTTAANCANCAACANTATTT 162
                                                                           ** *****

consensus_13856#2      TCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGC 69
consensus_13856#3      TCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGC 117
consensus_13856#0      TCAGAACTTGACCAAGCACACGTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGC 239
consensus_13856#1      TCAAAACTTGACNAAGCACACTTATCTGAAAGGGCGTTATGATGTGGTCACCTCCGTTGC 223
consensus_13856#4      TCAGAANTTGACCAAGCACACGTTTCTNAAANGGGGTTATGATGTGGTCACCTCCGTTGC 222
                       *** ** ***** ******** * *** *** ** *************************

consensus_13856#2      CATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACAT 129
consensus_13856#3      CATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACAT 177
consensus_13856#0      CATTCCCCTCGCTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTACAACAT 299
consensus_13856#1      CATTCCCCTCGNTCTTGCCGCCTCCAGCTTGTTTATGATAGGCCGTGGGGTGTNCAACAT 283
consensus_13856#4      CATTCCCCNCGNTCTTGNCGGCTCCAGCTTGTTTATGANAAGNCGNGGGGTGTACAACAT 282
                       ******** ** ***** ** ***************** * * ** ******* ******

consensus_13856#2      GTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCA 189
consensus_13856#3      GTNTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCA 237
consensus_13856#0      GTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCTCTCATTTCAGTACTTCA 359
consensus_13856#1      GTCTCATGGAGTCGGGAAAAAGGAGTGAACGACATGGTTTCCNCTCATTTCANTACTTCA 343
consensus_13856#4      NTTTCNTGGAATCCGGNAAAANGAGTNAACNANATNGTTTCCTCNCNTTTCANTNCTTCN 342
                        * ** **** ** ** **** **** *** * ** ****** * * ***** * **** 

consensus_13856#2      GCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATAC 249
consensus_13856#3      GCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCNCAAATAAATAC 297
consensus_13856#0      GCATAGGGGTGATAGCTTCAAGGCTTCCTATGGTGTCTTTTAAGTTGCACAAATAAATAC 419
consensus_13856#1      NCATANGGGTGATAGCTTCAAGGCTTCCNATGGTGTCTTTTAATTTGCACAAATAAATAC 403
consensus_13856#4      C-ATANGGGTGATAGCTTCCAAGGTTCCTATGG--------------------------- 374
                         *** ************* * * **** ****                           

consensus_13856#2      TGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTTTGATTTAAGCAAG 309
consensus_13856#3      TGTTGAAGTTAACTCTTGTTATATTACTGTTGGNAACTGTGGATTTNTGATTTAAGCAAG 357
consensus_13856#0      TGTTGAAGTTAACTCTTGTTATATTACTGTTGGTAACTGTGGATTTCTGATTTAAGCAAG 479
consensus_13856#1      TGTTGAAANTTAACTCTNGTTATATTACTGTTGGTAACTGTGGATTTCTNATTTAAACAA 463
consensus_13856#4      ------------------------------------------------------------
                                                                                   

consensus_13856#2      CTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTT 369
consensus_13856#3      CTGTTGTCAANATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCNAAAAAAAAA 417
consensus_13856#0      CTGTTGTCAAGATGATGGTAGTATTGGAATATCAGTTTGTTTACAGTATCTATTAATTTC 539
consensus_13856#1      ACTGTTGTCCNAATNATGGTAGTATTGGAATATCNCTTTGTTTACANTATCTATTAATTT 523
consensus_13856#4      ------------------------------------------------------------
                                                                                   

consensus_13856#2      TACATTCTTACCTCACCTTTTTCTCCCTTTTTCAGCAGTATTCATATAGCCTTGTAGGGC 429
consensus_13856#3      AAAAAAAAA--------------------------------------------------- 426
consensus_13856#0      TACATTCTTACCTCACCTTTTTCTCCCTTTCTCAGCAGTATTCATATAGCCTTGTAGGGC 599
consensus_13856#1      CTACATTC---------------------------------------------------- 531
consensus_13856#4      ------------------------------------------------------------
                                                                                   

consensus_13856#2      TCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGT 489
consensus_13856#3      ------------------------------------------------------------
consensus_13856#0      TCATGGTATATACTGTGTTGTTTGTATGCAGCAAGTCCATGAACAGTTTCAGGCTGGTGT 659
consensus_13856#1      ------------------------------------------------------------
consensus_13856#4      ------------------------------------------------------------
                                                                                   

consensus_13856#2      TGGTAGCCTAATCTGCAAAAAAAAAAAAAAAGA--------------------------- 522
consensus_13856#3      ------------------------------------------------------------
consensus_13856#0      TGGTAGCCTAATCTGCATGTTTTTGTTCTGGAGCACTTTAGTTTGTGTGATCTTGCCAAA 719
consensus_13856#1      ------------------------------------------------------------
consensus_13856#4      ------------------------------------------------------------
                                                                                   

consensus_13856#2      ---
consensus_13856#3      ---
consensus_13856#0      AAA 722
consensus_13856#1      ---
consensus_13856#4      ---
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)