These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1533 fasta sequence [TAAAGGAAAATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA-GGAATATACTCAACAATTCGATGTA-CCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGGAAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAACTTGTTTGTTGGGTGTAATTTAGTATATAAATTTGTTTGTTGGGTGTAGTTTAGTACATAAACTAAACTTGTGAAGTACTTATTTTGGTACATGAACTTATCTAATTCGTATGAATCCCAATC] [+] EMBL AK068221 [TAAAGGAAAATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA GGAATATACTCAACAATTCGATGTA CCCTTTAGTCGCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGGAAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAACTTGTTTGTTGGGT ] [+] EMBL CF318418 [ AATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA GGAATATACTCAACAATTCGATGTA CCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAG ] [+] EMBL CB653863 [ TCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA GGAATATACTCAACAATTCGATGTA CCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGGAAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCCCATGGCAGTAAAATTTGGGAAAG ] [+] EMBL C73572 [ GGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGANCCTTCAGGGATCCTCTTCCCGTACAAGTTCAACCGCA GGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTNATGCTGATGTTGCATGGACAANGGAATATACTCAACAATTCGATGTACCCCTTTAat ] [-] EMBL CB618829 [ AAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACTCAGAGGTATTTGGTGGGTGTAATTT ] [-] EMBL CB653864 [ TGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAACTTGTTTGTTGGGTGTAATTTAGTATATAAATTTGTTTGTTGGGTGTAGTTTAGTACATAAACTAAACTTGTGAAGTACTTATTTTGGTACATGAACTTATCTAATTCGTATGAATCCCAATC] consensusID : consensus_13860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 797 fasta sequence [ATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAA-GTAGTATC-TTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAAACTTGTTTGTTGGGGTGTAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000206 [ATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAA GTAGTATC TTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAAACTTGTTTGTTGGGGTGTAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000195 [ATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAA GTAGTATC TTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACAT AAACTTG ] [+] EMBL CB000858 [ GCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTG ] [+] EMBL CA999443 [ GCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATT ] [-] EMBL CB483490 [ AAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGGTAGTNTCGTNGATATGTNCAGTA ] consensusID : consensus_13860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [GCCCCTACAAGTGCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCGGCGAGAGATCCTTCACGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAGGAATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGTAAAATTATTAACTTTGTTACTTGAATTTTAACAAAAGTATGGAAAAGAATAAACTTCTGTTACAGACTATAAATTCATCCATTTACCTACTGTATTTGGTGTAAAGATAAAAGTTCATGAAATTGTGTCTAAATTTCAATATGAGTAGGCATGACATATCACGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAGAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCCTGCCGGGACTGTGAGAACTGCAATAGCTCTCTATAGAACTACTGCTCGCAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGG] [+] EMBL CB618828 [GCCCCTACAAGTGCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCGGCGAGAGATCCTTCACGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAGGAATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGTAAAATTATTAACTTTGTTACTTGAATTTTAACAAAAGTATGGAAAAGAATAAACTTCTGTTACAGACTATAAATTCATCCATTTACCTACTGTATTTGGTGTAAAGATAAAAGTTCATGAAATTGTGTCTAAATTTCAATATGAGTAGGCATGACATATCACGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAGAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCCTGCCGGGACTGTGAGAACTGCAATAGCTCTCTATAGAACTACTGCTCGCAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGG] consensusID : consensus_13860#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [GAGGTCGTCTCCTCCGCTCCTTGCGCCANGGACGAGTCGCGGCTCAACAGCGGAAGAGGCGGCGATCTCCCATCTGGCGAGCANAGCANGGGAAAGGGAANGGATCTTGTTANANTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAAGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTNCAAAGTGACCATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAANGAATATACTCNACAATTCNATGTNCCCTTTAGTCCCTGGGCATGAAATACANGAGTTGTAACTGANGTTGGTGCANACGTCCAGANCTTCAAANTGGGTGACCNTGTNNGTGTTGGCNCATACNTNAATTCNTGCCGGGACTGTGANAACTGCCATANCTCTCTANAAAACTACTGCTCNCAACNTGTCTTCNCTTTTCCATGGGTGTTTGACNCNGAATGGGACTGTCCCNAAGGGGAGGATATTCC] [+] EMBL BE229846 [GAGGTCGTCTCCTCCGCTCCTTGCGCCANGGACGAGTCGCGGCTCAACAGCGGAAGAGGCGGCGATCTCCCATCTGGCGAGCANAGCANGGGAAAGGGAANGGATCTTGTTANANTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAAGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTNCAAAGTGACCATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAANGAATATACTCNACAATTCNATGTNCCCTTTAGTCCCTGGGCATGAAATACANGAGTTGTAACTGANGTTGGTGCANACGTCCAGANCTTCAAANTGGGTGACCNTGTNNGTGTTGGCNCATACNTNAATTCNTGCCGGGACTGTGANAACTGCCATANCTCTCTANAAAACTACTGCTCNCAACNTGTCTTCNCTTTTCCATGGGTGTTTGACNCNGAATGGGACTGTCCCNAAGGGGAGGATATTCC] consensusID : consensus_13860#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [GAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCCAAGTAAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGNGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAAAAAAAAAAAA] [+] EMBL AU101335 [GAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCCAAGTAAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGNGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 TAAAGGAAAATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGC 60 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 TCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGAT 120 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 CTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGA 180 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 GAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACG 240 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 ATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAGGA 300 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 ATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAA 360 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 CTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACAT 420 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 ACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCAC 480 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 AACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATT 540 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ------------------------------------------------------------ consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 CTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGG 600 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 --------------------------------------------------ATGCGGCATA 10 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 AAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATA 660 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGG 70 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 ATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGG 720 consensus_13860#2 ------------------------------------GCCCCT-ACAAGTGCGCGGCTCAA 23 consensus_13860#3 ------------GAGGTCGTCTCCTCCGCTCCTTGCGCCANGGACGAGT-CGCGGCTCAA 47 consensus_13860#1 CAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGT-ACTAGTGAATCA 129 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 CAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGT-ACTAGTGAATCA 779 consensus_13860#2 CAGCGGA-GAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAG-GGGAAGGGATCT 81 consensus_13860#3 CAGCGGAAGAGGCGGCGATCTCCCATCTGGCGAGCANAGCANGGGAAAGGGAANGGATCT 107 consensus_13860#1 AAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAA 189 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 AAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAA 839 consensus_13860#2 TGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCGGCGAGA 141 consensus_13860#3 TGTTANANTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGA 167 consensus_13860#1 AATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGAT 249 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 AATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGAT 899 consensus_13860#2 GATCCTTCACGGATCCTCT---CCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGAC 198 consensus_13860#3 GATCCTTCAAGGATCCTCT---CCCCGTACAAGTTCAACCGCAGGGCTGTNCAAAGTGAC 224 consensus_13860#1 CACCCATTCGATCCTTATCTCACGCTTCTGAAAGT-TGGTGGTGTAATGGCACTACTTAG 308 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 CACCCATTCGATCCTTATCTCACGCTTCTGAAAGT-TGGTGGTGTAATGGCACTACTTAG 958 consensus_13860#2 GATGT-TTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAG 257 consensus_13860#3 CATGT-TTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAN 283 consensus_13860#1 CTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATC 368 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 CTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATC 1018 consensus_13860#2 GAATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGTAAAATTATTAACTTTGTTA 317 consensus_13860#3 GAATATACTCNACAATTCNATGTNCCCTTTAGTCCCTGGG-------------------- 323 consensus_13860#1 TGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAA 428 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 TGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAA 1078 consensus_13860#2 CTTGAATTTTAACAAAAGTATGGAAAAGAATAAACTTCTGTTACAGACTATAAATTCATC 377 consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 CAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAG 488 consensus_13860#4 ---------------------------------------------------------GAG 3 consensus_13860#0 CAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAG 1138 consensus_13860#2 CA---TTTACCTACTGTATTTGGTGTAAAGATAAAAGTTCATGAAATTGTGTCTAAATTT 434 consensus_13860#3 ---------------------------------------CATGAAATA------------ 332 consensus_13860#1 GCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGA-GAACTCGTTC-AAG 546 consensus_13860#4 GCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGA-GAACTCGTTCCAAG 62 consensus_13860#0 GCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGA-GAACTCGTTC-AAG 1196 consensus_13860#2 CAATATGAGTAGGCATGACATATCACGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAG 494 consensus_13860#3 -----------------------CANGAGTTGTAACTGANGTTGGTGCANACGTCCAGAN 369 * ****** ** *** * * *** * consensus_13860#1 TA-GTATCTTGAT-ATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAA 604 consensus_13860#4 TAAGTATCTTGAT-ATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAA 121 consensus_13860#0 TA-GTATCTTGAT-ATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAA 1254 consensus_13860#2 CTTCAGAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCCTGCCGGGACTGTGA 554 consensus_13860#3 CTTCAAANTGGGTGACCNTGTNNGTGTTGGCNCATACNTNAATTCNTGCCGGGACTGTGA 429 * * * * * * * * * *** * * * consensus_13860#1 GTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATT 664 consensus_13860#4 GTTTAAATGTCCTACAAGATGATGNGACCATGAGACAGTTCCAGAACAAAATGTTCCATT 181 consensus_13860#0 GTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATT 1314 consensus_13860#2 G---AACTGCAATAGCTCTCTATAGAACTACTG------CTCGCAACATG-TCTTCACTT 604 consensus_13860#3 N---AACTGCCATANCTCTCTANAAAACTACTG------CTCNCAACNTG-TCTTCNCTT 479 ** ** ** * ** * * *** * *** ** consensus_13860#1 TTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTAC 724 consensus_13860#4 TTAAGAAAAAAAAAAAAA------------------------------------------ 199 consensus_13860#0 TTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTAC 1374 consensus_13860#2 T--CAATGGTGTT-GACACTGA-TGGGACTGTCACAAAGGG------------------- 641 consensus_13860#3 TTCCATGGGTGTTTGACNCNGAATGGGACTGTCCCNAAGGGGAGGATATTCC-------- 531 * consensus_13860#1 ACAAACTTATTTGGTGGGTGTAATTTAATACATAAAACTTGTTTGTTGGGGTGTAAAAAA 784 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 ACAAACTTATTTGGTGGGTGTAATTTAATACATAAA-CTTGTTTGTTGGG-TGTAATTTA 1432 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 AAAAAAAAAAAAA----------------------------------------------- 797 consensus_13860#4 ------------------------------------------------------------ consensus_13860#0 GTATATAAATTTGTTTGTTGGGTGTAGTTTAGTACATAAACTAAACTTGTGAAGTACTTA 1492 consensus_13860#2 ------------------------------------------------------------ consensus_13860#3 ------------------------------------------------------------ consensus_13860#1 ----------------------------------------- consensus_13860#4 ----------------------------------------- consensus_13860#0 TTTTGGTACATGAACTTATCTAATTCGTATGAATCCCAATC 1533 consensus_13860#2 ----------------------------------------- consensus_13860#3 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||