These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1070 fasta sequence [CACACCACACCAACATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA-NC-TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG-ACGACGATGAGGCCACGCCCGCGTCGG-TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG-TTCGCGCCGCC-GGTGTCGGCGGCCG-AGCTGGCGCCGGCCGACGACA-TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC-GGCGCCCTCCGCC-GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC-GCG-ACAGG-TTCCCCAAGAGCGCGTCCACCGG-CGGAGAGTCGTCGTCG-TCATCGCGGCGCTGGCGCCTGCGCGACCTCGTCGGCGCCGGCGGCCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGACGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAA] [+] EMBL AK108331 [CACACCACACCAACATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCAGCC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTAACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TCCGCGCCGCC GGTGTCGGCGGCCG AGCTGGCGCCGGCCGACGACA TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCACCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCGCTGGCGCCTGCGCGACCTCGTCGGCGCCGGCGGCCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGACGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAA] [+] EMBL OSC30781 [ CATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCNATGGNGCAGTCGNCGCGCA GC TCCACANGCTGATCAGCTTCGGTNGNGGCGCCGACGGNGTCG ACGACGATGAGGCC ] [+] EMBL AU164809 [ AGCGCGTCGATTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCTACCCAGCGCCGCCGCNGCAGCCGCGATGGCGNAGTCGCCGCGCA GCNTCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGNGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCC GGTGTCGGCGGCCG AGTTGGCGCCGGCCGACGANN TCTTCGCGCACGGCCGCATCGTGCCGGNGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCG TGGCGCCTGC ] [+] EMBL AU164808 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCC GGNGTCGGCGGCCG AGCTGGCGCCGGCCGACGACA TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACANCTACTGCGgc ] [+] EMBL AU164758 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGANANCGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGG NTCGAACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACNTCGACTTCGCG TTCGC CCGCC GTTATCGG GGCCGAAGCTGGCGCCGGCCGACGAAA TCTTCGCGCANGGCCGCATCGTGCCGGCGTAACCGGTGTTCGACCGCAGC ] [+] EMBL AU070155 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGANCTCGACTT ] [+] EMBL AU163484 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGG GTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCCGGGNGTCGGCGGCCG AGCTGGCGCCGGCCGACGACA TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACNTCTCGCCCGGCGACGCCTCCACGGCGGGCGCCCTCCGCCGGACACCTACTGCGCGTGGACGCCGNGCTTCGCGCCGGGCTCGCCCGGCCNGCGAACAGGTTTCCCCAAGAGCGNGTCCAACGGNGGGANATTCGTCGTCGTTCATCGCGGCGCTGGCGGCTGaggc ] [+] EMBL AU163485 [ GGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCC GGTGTCGGCGGCCG AG TGGCGCCGGCCGACGACN TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCG TGGCGCCTGCGCGACCTCGTCGGC ] [+] EMBL AU065288 [ GCTACGCCCGCGTCGGTTCGANGTTGGTGACGCGGNGGGCGCCGGGCTCGACCTCGACTTCGNGTTTCGCGCCGCC GGTGTCGGCGGCCG AGCTGGCGCCGGCCGACGANANTCTTCGCGCACGGCCGCATCGTGCCGGNGTACCNGGTGTTCGACCGCAGCCTCNTCGACNTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCGGTGGCGCCTGCGCGACCT ] consensusID : consensus_13863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 537 fasta sequence [GGGAATAGCTG-GGC--GCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC-CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAA-AAAAAAAAAAAAAC] [+] EMBL CB966679 [GGGAAAAGCTG GGC GCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAA AAAAAAAAAAAAAC] [+] EMBL CB964810 [GGGAATAGCTGCGGC GCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAG ] [+] EMBL BU673230 [ AATAGCTC GGCCTTATCCCGCAGCGACGGCAAGGACAAGTTCG CTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATCAATGGAAACAGAGAGGAATGACATTTGAGAGATGATTTTGTCTAAAAAACAAAAAAAAAAAAAC] [+] EMBL CB964877 [ CGCAGCGACGGCAAGGACAAGTTCGC TCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAA GAAA ] [+] EMBL CB966817 [ GGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACNCGAGATGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13863#0 CACACCACACCAACATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCG 60 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 ATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCA 120 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 GCCGCGATGGCGCAGTCGCCGCGCANCTCCACACGCTGATCAGCTTCGGCCGCGGCGCCG 180 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 ACGGCGTCGACGACGATGAGGCCACGCCCGCGTCGGTCGACGTTGGTGACGCGGAGGGCG 240 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 CCGGGCTCGACCTCGACTTCGCGTTCGCGCCGCCGGTGTCGGCGGCCGAGCTGGCGCCGG 300 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 CCGACGACATCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCC 360 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 TCCTCGACCTCTCGCCCGGCGACGCCTCCACGGCGGCGCCCTCCGCCGACACCTACTGCG 420 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 CGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCCGCGACAGGTTCCCCAAGAGCGCGT 480 consensus_13863#1 ------------------------------------------------------------ consensus_13863#0 CCACCGGCGGAGAGTCGTCGTCGTCATCGCGGCGCTGGCGCCTGCGCGACCTCGTCGGCG 540 consensus_13863#1 -------------------------------------------------------GGGAA 5 ** consensus_13863#0 CCGGCGGCCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCG 600 consensus_13863#1 TAGCTGGGCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCG 65 * ** **************************************************** consensus_13863#0 CCGCGACGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGA 660 consensus_13863#1 CCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGA 125 ***** ************************************************** *** consensus_13863#0 AGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACA 720 consensus_13863#1 AGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACA 185 ************************************************************ consensus_13863#0 TGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGC 780 consensus_13863#1 TGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGC 245 ************************************************************ consensus_13863#0 AGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGT 840 consensus_13863#1 AGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGT 305 ************************************************************ consensus_13863#0 CGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTAC 900 consensus_13863#1 CGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTAC 365 ************************************************************ consensus_13863#0 TAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGA 960 consensus_13863#1 TAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGA 425 ************************************************************ consensus_13863#0 AATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAG 1020 consensus_13863#1 AATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAG 485 ************************************************************ consensus_13863#0 AGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAA-- 1070 consensus_13863#1 AGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAAAC 537 ************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||